Click here to switch to the map view.

The map label for this gene is ugpB

Identifier: 148242473

GI number: 148242473

Start: 1221131

End: 1222384

Strand: Direct

Name: ugpB

Synonym: SynRCC307_1374

Alternate gene names: NA

Gene position: 1221131-1222384 (Clockwise)

Preceding gene: 148242472

Following gene: 148242474

Centisome position: 54.88

GC content: 64.51

Gene sequence:

>1254_bases
ATGACGCTGCGCCGCCGGTTGCTGGGAGTGGTGCTAGCCAGCATCACCCTGCTGCTGATGGCAACAGGTGTGCCAGCAGC
CACGATCCCGGTCTCTGTCTTGATGCCGGCGTCCTTTGCCGATGCCAGCGCACCCCTGGTGCGGGAGTTCAACGCCAGCC
ATCCCCACATCCGCCTAGAGGTCACCCGAGGGCCGCTCGACACCGAATCCGTATCGGATCTGGCGATCAGCAGCTTGCTG
CTGGGCAGCAGCCCCTACGACTTGCTGCTGATGGATGTCACCTGGACCCCCAAATACGTGGCTGCCGGCTGGCTTGAGCC
GCTCGAGGGCTGGCTTGGTGATGACGCCATGGCTCCCCTGGCTCCTGGCGCTGATTTGGGCAATGCCTTCAGTGGCCACC
TCTGGCGCTTCCCCATGGTGGCCTCGATGGGGTTGCTCTATTGGCGCACGGATCTCATGGCGGCTCCGCCACGCACGCCC
ATGGAATTGGCTCGGATCAGCCGGGAGCTGCAATCCAGTGGTGCCGTGCGCTGGGGCTATGTCTGGCAAGGCCGGCAGTA
CGAGGGCCTGAGCACGGTCTATCTCGAAATGCTGCGGGGCTTTGGTGGCCGCTGGATCGTTGATGGCAGCCCAACCCTCG
ACAGCAAGGAAGCCGTGGCGGCCACCCGCTGGCTGGAGGGCTTAATCCGCCAGGGGATCTCACCGCCATCGGTAGTCACC
ATGGCCGAACCGCAAACCTTGCAAGTGTTCGCCGCTGGTCAGTCCGCCTTCATGCGCAACTGGCCCTACGCCTGGAACGA
ACTGAACCGCGCTGGCAGCGCCTTAGCCGGCAAAGTGGGCATCACCACAATGGTGGCTGAACCGGGCCAGCCCCACGTGG
CGACCCAGGGCAGCTGGGGGCTCGCCCTCACCAAGGGCAGCCAGCACAAGCGCGCCGCAATCGAAGCCCTGCAGTTCCTC
ACCAGCGAGGAGAGCCAAACCCGGCTCTACGAAGACTTTGGCTACACCCCAACACGCCAAGCGGTGTTCCGCGATCCCAA
GCTGGTGTCCGCTCACCCTGAGCTGCCGGAGCTGGAGGCAGCCCTCGCTGATGCCGTGCTTCGCCCCCTGACTCCGGTTT
ATGCACAGATCAGCGACCTGCTTTACCGCGAGCTCAGCCGGGTGTTCACCGCTCGGGTGAGCCCGCAGCAGGGAATGGAG
CAATTGCAGGAGCAAACGCTGCAGCTGCGCCGAACCGTGGGAGGTGAGATTTGA

Upstream 100 bases:

>100_bases
AGCAGCGCGAGCGCATGCAGCGCATGGAGCGTGCCGTTGACACCTTGAGCGTGGCCAACTGGGCCAGTGAGCAGCTCAAC
GCGCTCGAGCACTAAGGCCC

Downstream 100 bases:

>100_bases
GAGGCCAACGGCTGTGGCTGCTGATGGCACCGGCGTTGCTGCTGCTTTTAGCGGTCTTCGCCCTACCGATGCTGCAGTAC
GCCTGGCTCAGCACCCAGGC

Product: ABC-type sugar transport system, periplasmic component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 417; Mature: 416

Protein sequence:

>417_residues
MTLRRRLLGVVLASITLLLMATGVPAATIPVSVLMPASFADASAPLVREFNASHPHIRLEVTRGPLDTESVSDLAISSLL
LGSSPYDLLLMDVTWTPKYVAAGWLEPLEGWLGDDAMAPLAPGADLGNAFSGHLWRFPMVASMGLLYWRTDLMAAPPRTP
MELARISRELQSSGAVRWGYVWQGRQYEGLSTVYLEMLRGFGGRWIVDGSPTLDSKEAVAATRWLEGLIRQGISPPSVVT
MAEPQTLQVFAAGQSAFMRNWPYAWNELNRAGSALAGKVGITTMVAEPGQPHVATQGSWGLALTKGSQHKRAAIEALQFL
TSEESQTRLYEDFGYTPTRQAVFRDPKLVSAHPELPELEAALADAVLRPLTPVYAQISDLLYRELSRVFTARVSPQQGME
QLQEQTLQLRRTVGGEI

Sequences:

>Translated_417_residues
MTLRRRLLGVVLASITLLLMATGVPAATIPVSVLMPASFADASAPLVREFNASHPHIRLEVTRGPLDTESVSDLAISSLL
LGSSPYDLLLMDVTWTPKYVAAGWLEPLEGWLGDDAMAPLAPGADLGNAFSGHLWRFPMVASMGLLYWRTDLMAAPPRTP
MELARISRELQSSGAVRWGYVWQGRQYEGLSTVYLEMLRGFGGRWIVDGSPTLDSKEAVAATRWLEGLIRQGISPPSVVT
MAEPQTLQVFAAGQSAFMRNWPYAWNELNRAGSALAGKVGITTMVAEPGQPHVATQGSWGLALTKGSQHKRAAIEALQFL
TSEESQTRLYEDFGYTPTRQAVFRDPKLVSAHPELPELEAALADAVLRPLTPVYAQISDLLYRELSRVFTARVSPQQGME
QLQEQTLQLRRTVGGEI
>Mature_416_residues
TLRRRLLGVVLASITLLLMATGVPAATIPVSVLMPASFADASAPLVREFNASHPHIRLEVTRGPLDTESVSDLAISSLLL
GSSPYDLLLMDVTWTPKYVAAGWLEPLEGWLGDDAMAPLAPGADLGNAFSGHLWRFPMVASMGLLYWRTDLMAAPPRTPM
ELARISRELQSSGAVRWGYVWQGRQYEGLSTVYLEMLRGFGGRWIVDGSPTLDSKEAVAATRWLEGLIRQGISPPSVVTM
AEPQTLQVFAAGQSAFMRNWPYAWNELNRAGSALAGKVGITTMVAEPGQPHVATQGSWGLALTKGSQHKRAAIEALQFLT
SEESQTRLYEDFGYTPTRQAVFRDPKLVSAHPELPELEAALADAVLRPLTPVYAQISDLLYRELSRVFTARVSPQQGMEQ
LQEQTLQLRRTVGGEI

Specific function: Probably part of a binding-protein-dependent transport system [H]

COG id: COG1653

COG function: function code G; ABC-type sugar transport system, periplasmic component

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 1 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006059 [H]

Pfam domain/function: PF01547 SBP_bac_1 [H]

EC number: NA

Molecular weight: Translated: 45638; Mature: 45507

Theoretical pI: Translated: 6.00; Mature: 6.00

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLRRRLLGVVLASITLLLMATGVPAATIPVSVLMPASFADASAPLVREFNASHPHIRLE
CCHHHHHHHHHHHHHHHHHHHCCCCHHHCCHHHEECCCCCCCCCHHHHHCCCCCCEEEEE
VTRGPLDTESVSDLAISSLLLGSSPYDLLLMDVTWTPKYVAAGWLEPLEGWLGDDAMAPL
EECCCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCC
APGADLGNAFSGHLWRFPMVASMGLLYWRTDLMAAPPRTPMELARISRELQSSGAVRWGY
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCEEEEE
VWQGRQYEGLSTVYLEMLRGFGGRWIVDGSPTLDSKEAVAATRWLEGLIRQGISPPSVVT
EECCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEE
MAEPQTLQVFAAGQSAFMRNWPYAWNELNRAGSALAGKVGITTMVAEPGQPHVATQGSWG
ECCCCEEEEEECCCHHHHHCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCEECCCCCC
LALTKGSQHKRAAIEALQFLTSEESQTRLYEDFGYTPTRQAVFRDPKLVSAHPELPELEA
EEECCCCCHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHCCCCEEECCCCCHHHHH
ALADAVLRPLTPVYAQISDLLYRELSRVFTARVSPQQGMEQLQEQTLQLRRTVGGEI
HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
TLRRRLLGVVLASITLLLMATGVPAATIPVSVLMPASFADASAPLVREFNASHPHIRLE
CHHHHHHHHHHHHHHHHHHHCCCCHHHCCHHHEECCCCCCCCCHHHHHCCCCCCEEEEE
VTRGPLDTESVSDLAISSLLLGSSPYDLLLMDVTWTPKYVAAGWLEPLEGWLGDDAMAPL
EECCCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCC
APGADLGNAFSGHLWRFPMVASMGLLYWRTDLMAAPPRTPMELARISRELQSSGAVRWGY
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCEEEEE
VWQGRQYEGLSTVYLEMLRGFGGRWIVDGSPTLDSKEAVAATRWLEGLIRQGISPPSVVT
EECCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEE
MAEPQTLQVFAAGQSAFMRNWPYAWNELNRAGSALAGKVGITTMVAEPGQPHVATQGSWG
ECCCCEEEEEECCCHHHHHCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCEECCCCCC
LALTKGSQHKRAAIEALQFLTSEESQTRLYEDFGYTPTRQAVFRDPKLVSAHPELPELEA
EEECCCCCHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHCCCCEEECCCCCHHHHH
ALADAVLRPLTPVYAQISDLLYRELSRVFTARVSPQQGMEQLQEQTLQLRRTVGGEI
HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 10567266 [H]