| Definition | Synechococcus sp. RCC307, complete genome. |
|---|---|
| Accession | NC_009482 |
| Length | 2,224,914 |
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The map label for this gene is pulD [H]
Identifier: 148241667
GI number: 148241667
Start: 502077
End: 504359
Strand: Direct
Name: pulD [H]
Synonym: SynRCC307_0568
Alternate gene names: 148241667
Gene position: 502077-504359 (Clockwise)
Preceding gene: 148241666
Following gene: 148241668
Centisome position: 22.57
GC content: 50.77
Gene sequence:
>2283_bases GTGCATCGCCTCTTCCCAGTTGCCTTGGCTGCAGCAATGGCGATGCCAATCGTGGAAGTGCGTGCTGCTGCTCGCGCTGA TTTAAAAATCATCCGCTTCCCCGGCTCGATTCAGCTCAGGTTGGTGGGCATGGGGATGAACCCCGATGTGCGCCAAATCA AAACAGCTCGTGGTTGGACGATCGAAGTCAACACAGGCCAAAGTCTTGCTCCACTAGGCAGCCCCAAGTTCTTCACCATG CCCGATGCGGGTATGGACAGCATCACCTTCGATGGCACGGGCACCCTCTGGCGCTTGGAGGTGAACGCGCTCCAGGGCAA CACCTTGGCACCGCCAGTCATCACGGCCAATGGCCGTGATGTGGAGGTGAGTTTCCAGGCTCAGCCTTTGCCCTCAATGG AGGCTGGCAGTTACGACCTCAATACCCCGGGCCGGGTTCGCCGCAACACCTACGTGCCTCCGCTGCGTAAGCGGGCAACG GCACCACCTGTTGGAGACATGGCGATCGCCTCAATTGCGATTAAGGGCAATGAAGTGCGCATGCCTGGGGCTGGAAAGGT TGAGCGCTTGACCCTGCGTAATGCACCGGCACGAGATGTGCTGATGACTCTGGGTCGTGCTGGGGGTTACAACGTGGCTT TTTACAGCAAGCAGGGAGAAGAGGGTTCAGCTACTTCCGGCGGAAACCCTATTTCAGTTGACTTTCAAGATGAGCCTATT GAATCCGCTGTCAATTTGGTGCTCACCTTGGGAGGCTTGCAGGCCAAGCGACAAGGCAACACGCTCATTGTTGGTGAAAA GCTTCCCTCCTTTGCGCGGCAGCTAATGAGCCGCACGGTTCGGCTCAATCAAGTTTCTGCTGCTCGCGCTACTGAATTTC TGATGAGCCAGGGCGCTACTTTGTATCGCACTAAAGTTTTAGAAGAAAAACAAGAGGGTGTTGAAGCTGTAGATGTAATC GGTTCTTCTGGCAATCAGGTTAATACTGGACCTAAGACAGAGTTAACTGGTAAAAGTGTTAGCATTCAAACGGTTGAAGC CGATGGCAGTGCCTCGGGTGCTCTACCGCTCACTGGCTTGACGATTTCTCCAGATGATCGTCTCAACTCGGTTACTCTCA CGGCTGAGCCTGCGTTAGTGTCAATTGCTGAAGGGTATTTAAAAACAATTGATTTGCGGAAGCGTCAAGTTGCTGTGAGG GTCCAGGTTTTAGACGTTAATCTTGATAATGTAAAAACAATGAATAATAGCTTTGCCTTGAGGACCGGCAATACTTTCCT CGTCAATCGAGAAGGTGAGATGCTGGTCAACTTTGGTGATTTGAAGCCTCCTGACACTGAAAGGGCTGGAGTTCCCTCTC TCTACGATGGGTCTACCGGTTCTCCTTTGGTTGGAGCAGGGGCATTCTCTATGCCAGGAGAAGATCAGGTTTTTCTTGAT CAGCCAGTTCGTCAATTCCCTTATCAAGGGGCTGGATCTAGGTATCCATATGGATTTCGGAGAACTTCGCCTCCTTCTCC AGTTCAGGGAAGCAATTTAAGGGGAAACCTTTATTCCAGGCCTGGCTTTGGACCATTTTCCAGTCCTGGACAGCCTGGCG TGGTCGAAGTTGACAAGGACGGTCTTGTTACGTTTGAGCCGCCGAAAAACTTCCAGTATCCAAAAGACCAATTTTTTGAT TTTGTCAAGGCATTGATTCGCTCTTCTTCTGCCAAGGTGGTGGCAGATCCGACACTTCTTGTGCAAGAAAGTGAGTCTTC GAGCGTCGGTGTCGGCACAACAGTTTTTGTTAATTGCTCCTCTAGTACTTCCGCGAATGGGACCCGAAACTTTACACCTA AGAAAGAAACAGCTGGCTTGCAGGTTGATGTCAGCGTGTCTCGAATTGATGACAATGGATTTGTTTCTCTTGCGCTCAAC CCAGTCCTCAAGGCTCCTTCAGGATTGCCGGTCCCCGTTAACTGTGGGGGGATTGATTTGCCTACCCGCGATCTTGCGGT AAGGGAGCTTAGGTCGGGAGAATTTCGTGTTCGCGACGGTCAAACTTTGATTTTGACTGGTGTTATTCAGGAGGAGGTCC TTGAGTCTGTTGATAAGTGGCCTCTGCTGGGAGATGTGCCTTTGATTGGTCAATTTTTTCGCAAATCTTCGAATACGAGG CAAAAAAGAGAACTGGTCATCGTAGTGACTCCACGAATTTTGGATGACAATCAAGGTGGGAATTATGGATATGGTTATCA GCCTTCCACTCAAGAGGCTAAGAAGCTGATTTATCAGCCTTAG
Upstream 100 bases:
>100_bases ATGGACAAGCGCTTCTCAAGGGTTGATGCGATTGCTGCGTTGCCACTGGATTGGCCCTCTCTTGACCGGTACCTTCCGGC TATTGATGATCATGTGATTA
Downstream 100 bases:
>100_bases AGAGAGCCTCGATTACGGTCGGCCCATGGCATCCCTCTGGCTGCAACGCTTCTGGACCTGGCGTCCGCGGTCCCTTTCAG CCCGCTTGGCCCGCGTGGGC
Product: Type II secretory pathway, component PulD
Products: NA
Alternate protein names: DNA transformation protein ComE [H]
Number of amino acids: Translated: 760; Mature: 760
Protein sequence:
>760_residues MHRLFPVALAAAMAMPIVEVRAAARADLKIIRFPGSIQLRLVGMGMNPDVRQIKTARGWTIEVNTGQSLAPLGSPKFFTM PDAGMDSITFDGTGTLWRLEVNALQGNTLAPPVITANGRDVEVSFQAQPLPSMEAGSYDLNTPGRVRRNTYVPPLRKRAT APPVGDMAIASIAIKGNEVRMPGAGKVERLTLRNAPARDVLMTLGRAGGYNVAFYSKQGEEGSATSGGNPISVDFQDEPI ESAVNLVLTLGGLQAKRQGNTLIVGEKLPSFARQLMSRTVRLNQVSAARATEFLMSQGATLYRTKVLEEKQEGVEAVDVI GSSGNQVNTGPKTELTGKSVSIQTVEADGSASGALPLTGLTISPDDRLNSVTLTAEPALVSIAEGYLKTIDLRKRQVAVR VQVLDVNLDNVKTMNNSFALRTGNTFLVNREGEMLVNFGDLKPPDTERAGVPSLYDGSTGSPLVGAGAFSMPGEDQVFLD QPVRQFPYQGAGSRYPYGFRRTSPPSPVQGSNLRGNLYSRPGFGPFSSPGQPGVVEVDKDGLVTFEPPKNFQYPKDQFFD FVKALIRSSSAKVVADPTLLVQESESSSVGVGTTVFVNCSSSTSANGTRNFTPKKETAGLQVDVSVSRIDDNGFVSLALN PVLKAPSGLPVPVNCGGIDLPTRDLAVRELRSGEFRVRDGQTLILTGVIQEEVLESVDKWPLLGDVPLIGQFFRKSSNTR QKRELVIVVTPRILDDNQGGNYGYGYQPSTQEAKKLIYQP
Sequences:
>Translated_760_residues MHRLFPVALAAAMAMPIVEVRAAARADLKIIRFPGSIQLRLVGMGMNPDVRQIKTARGWTIEVNTGQSLAPLGSPKFFTM PDAGMDSITFDGTGTLWRLEVNALQGNTLAPPVITANGRDVEVSFQAQPLPSMEAGSYDLNTPGRVRRNTYVPPLRKRAT APPVGDMAIASIAIKGNEVRMPGAGKVERLTLRNAPARDVLMTLGRAGGYNVAFYSKQGEEGSATSGGNPISVDFQDEPI ESAVNLVLTLGGLQAKRQGNTLIVGEKLPSFARQLMSRTVRLNQVSAARATEFLMSQGATLYRTKVLEEKQEGVEAVDVI GSSGNQVNTGPKTELTGKSVSIQTVEADGSASGALPLTGLTISPDDRLNSVTLTAEPALVSIAEGYLKTIDLRKRQVAVR VQVLDVNLDNVKTMNNSFALRTGNTFLVNREGEMLVNFGDLKPPDTERAGVPSLYDGSTGSPLVGAGAFSMPGEDQVFLD QPVRQFPYQGAGSRYPYGFRRTSPPSPVQGSNLRGNLYSRPGFGPFSSPGQPGVVEVDKDGLVTFEPPKNFQYPKDQFFD FVKALIRSSSAKVVADPTLLVQESESSSVGVGTTVFVNCSSSTSANGTRNFTPKKETAGLQVDVSVSRIDDNGFVSLALN PVLKAPSGLPVPVNCGGIDLPTRDLAVRELRSGEFRVRDGQTLILTGVIQEEVLESVDKWPLLGDVPLIGQFFRKSSNTR QKRELVIVVTPRILDDNQGGNYGYGYQPSTQEAKKLIYQP >Mature_760_residues MHRLFPVALAAAMAMPIVEVRAAARADLKIIRFPGSIQLRLVGMGMNPDVRQIKTARGWTIEVNTGQSLAPLGSPKFFTM PDAGMDSITFDGTGTLWRLEVNALQGNTLAPPVITANGRDVEVSFQAQPLPSMEAGSYDLNTPGRVRRNTYVPPLRKRAT APPVGDMAIASIAIKGNEVRMPGAGKVERLTLRNAPARDVLMTLGRAGGYNVAFYSKQGEEGSATSGGNPISVDFQDEPI ESAVNLVLTLGGLQAKRQGNTLIVGEKLPSFARQLMSRTVRLNQVSAARATEFLMSQGATLYRTKVLEEKQEGVEAVDVI GSSGNQVNTGPKTELTGKSVSIQTVEADGSASGALPLTGLTISPDDRLNSVTLTAEPALVSIAEGYLKTIDLRKRQVAVR VQVLDVNLDNVKTMNNSFALRTGNTFLVNREGEMLVNFGDLKPPDTERAGVPSLYDGSTGSPLVGAGAFSMPGEDQVFLD QPVRQFPYQGAGSRYPYGFRRTSPPSPVQGSNLRGNLYSRPGFGPFSSPGQPGVVEVDKDGLVTFEPPKNFQYPKDQFFD FVKALIRSSSAKVVADPTLLVQESESSSVGVGTTVFVNCSSSTSANGTRNFTPKKETAGLQVDVSVSRIDDNGFVSLALN PVLKAPSGLPVPVNCGGIDLPTRDLAVRELRSGEFRVRDGQTLILTGVIQEEVLESVDKWPLLGDVPLIGQFFRKSSNTR QKRELVIVVTPRILDDNQGGNYGYGYQPSTQEAKKLIYQP
Specific function: Involved in transformation (competence for DNA uptake) [H]
COG id: COG4796
COG function: function code U; Type II secretory pathway, component HofQ
Gene ontology:
Cell location: Cell outer membrane (Probable) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the GSP D family [H]
Homologues:
Organism=Escherichia coli, GI87082242, Length=232, Percent_Identity=25.8620689655172, Blast_Score=64, Evalue=4e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001775 - InterPro: IPR005644 - InterPro: IPR013355 - InterPro: IPR004846 - InterPro: IPR004845 - InterPro: IPR001814 [H]
Pfam domain/function: PF00263 Secretin; PF03958 Secretin_N [H]
EC number: NA
Molecular weight: Translated: 81619; Mature: 81619
Theoretical pI: Translated: 9.20; Mature: 9.20
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MHRLFPVALAAAMAMPIVEVRAAARADLKIIRFPGSIQLRLVGMGMNPDVRQIKTARGWT CCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCEEEEEEEECCCCCHHHHHCCCCEE IEVNTGQSLAPLGSPKFFTMPDAGMDSITFDGTGTLWRLEVNALQGNTLAPPVITANGRD EEECCCCCCCCCCCCCEEECCCCCCCCEEECCCCEEEEEEEEEECCCCCCCCEEECCCCE VEVSFQAQPLPSMEAGSYDLNTPGRVRRNTYVPPLRKRATAPPVGDMAIASIAIKGNEVR EEEEEECCCCCCCCCCCEECCCCCCCCCCCCCCCHHHHCCCCCCCCEEEEEEEEECCEEE MPGAGKVERLTLRNAPARDVLMTLGRAGGYNVAFYSKQGEEGSATSGGNPISVDFQDEPI CCCCCCEEEEEECCCCHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCEEEEECCCCCH ESAVNLVLTLGGLQAKRQGNTLIVGEKLPSFARQLMSRTVRLNQVSAARATEFLMSQGAT HHHHEEEEEECCCEECCCCCEEEEECCCHHHHHHHHHHHEEHHHHHHHHHHHHHHHCCCC LYRTKVLEEKQEGVEAVDVIGSSGNQVNTGPKTELTGKSVSIQTVEADGSASGALPLTGL EEHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCEECCCEEEEEEEECCCCCCCCCEEEEE TISPDDRLNSVTLTAEPALVSIAEGYLKTIDLRKRQVAVRVQVLDVNLDNVKTMNNSFAL EECCCCCCCEEEEEECCCHHHHHHHHHHHHHHCCEEEEEEEEEEEECCCCEEECCCCEEE RTGNTFLVNREGEMLVNFGDLKPPDTERAGVPSLYDGSTGSPLVGAGAFSMPGEDQVFLD EECCEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCEEEC QPVRQFPYQGAGSRYPYGFRRTSPPSPVQGSNLRGNLYSRPGFGPFSSPGQPGVVEVDKD CHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCC GLVTFEPPKNFQYPKDQFFDFVKALIRSSSAKVVADPTLLVQESESSSVGVGTTVFVNCS CEEEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEECCEEEEECCCCCCCCCCEEEEEEEC SSTSANGTRNFTPKKETAGLQVDVSVSRIDDNGFVSLALNPVLKAPSGLPVPVNCGGIDL CCCCCCCCCCCCCCHHHCCEEEEEEEEEECCCCEEEEEECHHHCCCCCCCEEECCCCCCC PTRDLAVRELRSGEFRVRDGQTLILTGVIQEEVLESVDKWPLLGDVPLIGQFFRKSSNTR CCHHHHHHHHCCCCEEEECCCEEEEEHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCC QKRELVIVVTPRILDDNQGGNYGYGYQPSTQEAKKLIYQP CCCEEEEEECCEEEECCCCCCCCCCCCCCHHHHHHHCCCC >Mature Secondary Structure MHRLFPVALAAAMAMPIVEVRAAARADLKIIRFPGSIQLRLVGMGMNPDVRQIKTARGWT CCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCEEEEEEEECCCCCHHHHHCCCCEE IEVNTGQSLAPLGSPKFFTMPDAGMDSITFDGTGTLWRLEVNALQGNTLAPPVITANGRD EEECCCCCCCCCCCCCEEECCCCCCCCEEECCCCEEEEEEEEEECCCCCCCCEEECCCCE VEVSFQAQPLPSMEAGSYDLNTPGRVRRNTYVPPLRKRATAPPVGDMAIASIAIKGNEVR EEEEEECCCCCCCCCCCEECCCCCCCCCCCCCCCHHHHCCCCCCCCEEEEEEEEECCEEE MPGAGKVERLTLRNAPARDVLMTLGRAGGYNVAFYSKQGEEGSATSGGNPISVDFQDEPI CCCCCCEEEEEECCCCHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCEEEEECCCCCH ESAVNLVLTLGGLQAKRQGNTLIVGEKLPSFARQLMSRTVRLNQVSAARATEFLMSQGAT HHHHEEEEEECCCEECCCCCEEEEECCCHHHHHHHHHHHEEHHHHHHHHHHHHHHHCCCC LYRTKVLEEKQEGVEAVDVIGSSGNQVNTGPKTELTGKSVSIQTVEADGSASGALPLTGL EEHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCEECCCEEEEEEEECCCCCCCCCEEEEE TISPDDRLNSVTLTAEPALVSIAEGYLKTIDLRKRQVAVRVQVLDVNLDNVKTMNNSFAL EECCCCCCCEEEEEECCCHHHHHHHHHHHHHHCCEEEEEEEEEEEECCCCEEECCCCEEE RTGNTFLVNREGEMLVNFGDLKPPDTERAGVPSLYDGSTGSPLVGAGAFSMPGEDQVFLD EECCEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCEEEC QPVRQFPYQGAGSRYPYGFRRTSPPSPVQGSNLRGNLYSRPGFGPFSSPGQPGVVEVDKD CHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCC GLVTFEPPKNFQYPKDQFFDFVKALIRSSSAKVVADPTLLVQESESSSVGVGTTVFVNCS CEEEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEECCEEEEECCCCCCCCCCEEEEEEEC SSTSANGTRNFTPKKETAGLQVDVSVSRIDDNGFVSLALNPVLKAPSGLPVPVNCGGIDL CCCCCCCCCCCCCCHHHCCEEEEEEEEEECCCCEEEEEECHHHCCCCCCCEEECCCCCCC PTRDLAVRELRSGEFRVRDGQTLILTGVIQEEVLESVDKWPLLGDVPLIGQFFRKSSNTR CCHHHHHHHHCCCCEEEECCCEEEEEHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCC QKRELVIVVTPRILDDNQGGNYGYGYQPSTQEAKKLIYQP CCCEEEEEECCEEEECCCCCCCCCCCCCCHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 1916268; 7542800; 1856167 [H]