| Definition | Synechococcus sp. RCC307, complete genome. |
|---|---|
| Accession | NC_009482 |
| Length | 2,224,914 |
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The map label for this gene is 148241666
Identifier: 148241666
GI number: 148241666
Start: 501418
End: 502002
Strand: Direct
Name: 148241666
Synonym: SynRCC307_0567
Alternate gene names: NA
Gene position: 501418-502002 (Clockwise)
Preceding gene: 148241664
Following gene: 148241667
Centisome position: 22.54
GC content: 58.46
Gene sequence:
>585_bases ATGAAGCGAGATGCTGGTTTCTCACTTTTGGAGTTGCTGCTGGCCTGCAGCCTTGGATTGCTGGTGTTTGGCGTCGCTGC GTCTGCGCTTCTCTCAGAGCAAAAGCTTGGTAGCCGCATGGGCGGGCTCCTCCGGCAGCGACAGCTTCTGTTGCGAGCCA ATCAACTGATTGCGGCTGATGTGCAGCGCGGCATTGCTCTGGCTCCTGAACTGGTTAGCCCTTGCCACCTGGCTGGCCGC AAGCGTTGGCTGCAGCTTCTCAACGCCGATGGCTCCATCACCACTTACAGCATTGGCAAAGCTCCCAGTGGCATTTGGCA AGGGGAGGTTTTGATGCGCTGCGGGCCGGCCTATGGGCTTGATGGCCGTATCAAAGCTGGCGCTCGATCTCTAAACCGAG TGGTGCTGGATGGTCTGGTTCCGTCTTCGCAGGCATGGGCTGGTTGTTCGTTGCCCCAGGCAGAGACCTTCTCAGAAGCA CCTGTTTGCTGGGAGCCCGCGAGTGGTGTGGTGCAGTGGCAGCTCCAGCGCACAAGTAATCGAGTGACCACACAACAAGA TGGACAAGCGCTTCTCAAGGGTTGA
Upstream 100 bases:
>100_bases CAGTGTGGCTTTTTCTGGCCGGTATCTGTCCTGAGAGCTGGCTGAGAAATCCCTGAGTGTGCTTGCGGGGAATCCTTGGC ATAACTGGGATGTGGCTTAG
Downstream 100 bases:
>100_bases TGCGATTGCTGCGTTGCCACTGGATTGGCCCTCTCTTGACCGGTACCTTCCGGCTATTGATGATCATGTGATTAGTGCAT CGCCTCTTCCCAGTTGCCTT
Product: pili subunit superfamily protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 194; Mature: 194
Protein sequence:
>194_residues MKRDAGFSLLELLLACSLGLLVFGVAASALLSEQKLGSRMGGLLRQRQLLLRANQLIAADVQRGIALAPELVSPCHLAGR KRWLQLLNADGSITTYSIGKAPSGIWQGEVLMRCGPAYGLDGRIKAGARSLNRVVLDGLVPSSQAWAGCSLPQAETFSEA PVCWEPASGVVQWQLQRTSNRVTTQQDGQALLKG
Sequences:
>Translated_194_residues MKRDAGFSLLELLLACSLGLLVFGVAASALLSEQKLGSRMGGLLRQRQLLLRANQLIAADVQRGIALAPELVSPCHLAGR KRWLQLLNADGSITTYSIGKAPSGIWQGEVLMRCGPAYGLDGRIKAGARSLNRVVLDGLVPSSQAWAGCSLPQAETFSEA PVCWEPASGVVQWQLQRTSNRVTTQQDGQALLKG >Mature_194_residues MKRDAGFSLLELLLACSLGLLVFGVAASALLSEQKLGSRMGGLLRQRQLLLRANQLIAADVQRGIALAPELVSPCHLAGR KRWLQLLNADGSITTYSIGKAPSGIWQGEVLMRCGPAYGLDGRIKAGARSLNRVVLDGLVPSSQAWAGCSLPQAETFSEA PVCWEPASGVVQWQLQRTSNRVTTQQDGQALLKG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 20720; Mature: 20720
Theoretical pI: Translated: 9.82; Mature: 9.82
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.6 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 2.6 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKRDAGFSLLELLLACSLGLLVFGVAASALLSEQKLGSRMGGLLRQRQLLLRANQLIAAD CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VQRGIALAPELVSPCHLAGRKRWLQLLNADGSITTYSIGKAPSGIWQGEVLMRCGPAYGL HHCCHHHCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHCCCCCCC DGRIKAGARSLNRVVLDGLVPSSQAWAGCSLPQAETFSEAPVCWEPASGVVQWQLQRTSN CCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEHHCC RVTTQQDGQALLKG CCCCCCCCHHHCCC >Mature Secondary Structure MKRDAGFSLLELLLACSLGLLVFGVAASALLSEQKLGSRMGGLLRQRQLLLRANQLIAAD CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VQRGIALAPELVSPCHLAGRKRWLQLLNADGSITTYSIGKAPSGIWQGEVLMRCGPAYGL HHCCHHHCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHCCCCCCC DGRIKAGARSLNRVVLDGLVPSSQAWAGCSLPQAETFSEAPVCWEPASGVVQWQLQRTSN CCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEHHCC RVTTQQDGQALLKG CCCCCCCCHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA