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The map label for this gene is ndhJ

Identifier: 148241314

GI number: 148241314

Start: 213895

End: 214425

Strand: Direct

Name: ndhJ

Synonym: SynRCC307_0215

Alternate gene names: 148241314

Gene position: 213895-214425 (Clockwise)

Preceding gene: 148241313

Following gene: 148241316

Centisome position: 9.61

GC content: 56.87

Gene sequence:

>531_bases
ATGAGCGAGACCCCCACCTCACCCAACCAGGATTTGCCGGAAGCTCCCCAGGCTGGTCCTCTCTCCCAATGGCTTACGAG
CCAAGGTTTTGATCACCAAATTCTAGGCAACGACCACCTGGGGATTGAGCGCCTGGGGGTTGAGCCCTTGGCATTGCCCC
TGGTGGCTACTGCTTTGAAGTCCAAGGGGTTTGACTACCTGCAAGTTCAAGGGGGCTTTGACCAAGGCCCCGGCGAACCA
TTGGTGAGCTTTTACCACCTGGTTCAGGTGGGAGGTAGTGACGGTGCCTCGACAGCTGAAGTCCGTCTTGAGGTGAGTCT
TGCCCGTGATGGGGATCTCACCGTTCCATCCCTCTATCCACTGTTTCGCGGTGCTGATTGGCAGGAGCGCGAAACGTTTG
ACCTATTTGGGATCAACTACAGCGGCCATCCCCACCCCAAGCGTCTGCTGATGCCTGAAGACTGGGTTGGTTACCCCTTG
CGGAAGGACTACGTCCAGCCTGATTTTTACGAGCTTCAGGACGCCTACTGA

Upstream 100 bases:

>100_bases
TGCGCGCTGAAACCCAACAAAAGGCACTGGCTGCAGCGGAAGCCGTCTCTCCTCTCAACTTGGCTCCAGCGGAGCAACCC
GAAACAATCCCCGCCAAATC

Downstream 100 bases:

>100_bases
TCAGTTGATCTGGCGTTTTTGTTTGGCCCGGTAGAAACGCATCACCGCCAAAGCAAGGCTGCGAGAATCGTGGCGCAGGG
TGCCTTTGAAGGCACGTCCT

Product: NADH dehydrogenase subunit J

Products: NAD+; ubiquinol

Alternate protein names: NAD(P)H dehydrogenase subunit J; NADH-plastoquinone oxidoreductase subunit J; NDH-1 subunit J; NDH-J

Number of amino acids: Translated: 176; Mature: 175

Protein sequence:

>176_residues
MSETPTSPNQDLPEAPQAGPLSQWLTSQGFDHQILGNDHLGIERLGVEPLALPLVATALKSKGFDYLQVQGGFDQGPGEP
LVSFYHLVQVGGSDGASTAEVRLEVSLARDGDLTVPSLYPLFRGADWQERETFDLFGINYSGHPHPKRLLMPEDWVGYPL
RKDYVQPDFYELQDAY

Sequences:

>Translated_176_residues
MSETPTSPNQDLPEAPQAGPLSQWLTSQGFDHQILGNDHLGIERLGVEPLALPLVATALKSKGFDYLQVQGGFDQGPGEP
LVSFYHLVQVGGSDGASTAEVRLEVSLARDGDLTVPSLYPLFRGADWQERETFDLFGINYSGHPHPKRLLMPEDWVGYPL
RKDYVQPDFYELQDAY
>Mature_175_residues
SETPTSPNQDLPEAPQAGPLSQWLTSQGFDHQILGNDHLGIERLGVEPLALPLVATALKSKGFDYLQVQGGFDQGPGEPL
VSFYHLVQVGGSDGASTAEVRLEVSLARDGDLTVPSLYPLFRGADWQERETFDLFGINYSGHPHPKRLLMPEDWVGYPLR
KDYVQPDFYELQDAY

Specific function: NDH-1 shuttles electrons from an unknown electron donor, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory and/or the photosynthetic chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone

COG id: COG0852

COG function: function code C; NADH:ubiquinone oxidoreductase 27 kD subunit

Gene ontology:

Cell location: Cellular thylakoid membrane; Peripheral membrane protein; Cytoplasmic side

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the complex I 30 kDa subunit family

Homologues:

Organism=Escherichia coli, GI145693162, Length=88, Percent_Identity=45.4545454545455, Blast_Score=86, Evalue=2e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NDHJ_SYNR3 (A5GQF9)

Other databases:

- EMBL:   CT978603
- RefSeq:   YP_001226471.1
- ProteinModelPortal:   A5GQF9
- SMR:   A5GQF9
- STRING:   A5GQF9
- GeneID:   5157856
- GenomeReviews:   CT978603_GR
- KEGG:   syr:SynRCC307_0215
- eggNOG:   COG0852
- HOGENOM:   HBG727675
- OMA:   YELQDAY
- ProtClustDB:   PRK12494
- GO:   GO:0006810
- HAMAP:   MF_01357
- InterPro:   IPR010218
- InterPro:   IPR001268
- InterPro:   IPR020396
- ProDom:   PD001581

Pfam domain/function: PF00329 Complex1_30kDa

EC number: 1.6.5.3

Molecular weight: Translated: 19515; Mature: 19384

Theoretical pI: Translated: 4.25; Mature: 4.25

Prosite motif: PS00542 COMPLEX1_30K

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
0.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSETPTSPNQDLPEAPQAGPLSQWLTSQGFDHQILGNDHLGIERLGVEPLALPLVATALK
CCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCEECCCCCCCHHHCCCCHHHHHHHHHHHH
SKGFDYLQVQGGFDQGPGEPLVSFYHLVQVGGSDGASTAEVRLEVSLARDGDLTVPSLYP
HCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCCCCEEEEEEEEEEECCCCCCCCCHHH
LFRGADWQERETFDLFGINYSGHPHPKRLLMPEDWVGYPLRKDYVQPDFYELQDAY
HHCCCCCCCCCEEEEEEECCCCCCCCCEECCCCCCCCCCCHHCCCCCCHHHHCCCC
>Mature Secondary Structure 
SETPTSPNQDLPEAPQAGPLSQWLTSQGFDHQILGNDHLGIERLGVEPLALPLVATALK
CCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCEECCCCCCCHHHCCCCHHHHHHHHHHHH
SKGFDYLQVQGGFDQGPGEPLVSFYHLVQVGGSDGASTAEVRLEVSLARDGDLTVPSLYP
HCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCCCCEEEEEEEEEEECCCCCCCCCHHH
LFRGADWQERETFDLFGINYSGHPHPKRLLMPEDWVGYPLRKDYVQPDFYELQDAY
HHCCCCCCCCCEEEEEEECCCCCCCCCEECCCCCCCCCCCHHCCCCCCHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NADH; H+; ubiquinone

Specific reaction: NADH + H+ + ubiquinone = NAD+ + ubiquinol

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA