| Definition | Synechococcus sp. RCC307, complete genome. |
|---|---|
| Accession | NC_009482 |
| Length | 2,224,914 |
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The map label for this gene is 148241300
Identifier: 148241300
GI number: 148241300
Start: 203892
End: 204839
Strand: Direct
Name: 148241300
Synonym: SynRCC307_0201
Alternate gene names: NA
Gene position: 203892-204839 (Clockwise)
Preceding gene: 148241299
Following gene: 148241301
Centisome position: 9.16
GC content: 38.29
Gene sequence:
>948_bases ATGACCGTTTCATTAATCACTGGCTGTCATCGTTCTGGGTCCACATGGCTTGGTAAAACTATTTGTTATGCTTCAAACTC TATCTACTTTTGGGAGCCTTTCAATTTAAACTCGCCTCAATTGTATAAATCTTTAATCTCTAGTTCCTTGAACAATAACA AATATTGGTATCCTTTCCTTCCATCTACTCATCAATTTTGGCCTGATTTGATTCGTGTTTGCAGCAAGCGTCGTCTTTTG TATTCTAATATCTCCTTTTCTGATTTTTTTGCTGATAGTCCAAAGCGTACTCTTTTTGCGCTTAAAAAAGCTGTGGCGCT GCAGTTTTCTTTGCTCACTGGTGGAAATATTGTTATTAAAGATCCTTTGATGCTATTTTCAGTTGAACCTGCGCTTGAGT CATCTGCTGTAGATAACGTTGTAATTTTAACTCGAGACCCTAGAGCCTTCTACACCAGCGTGAAAAAAGCAAATTGGGCT TTTGATTTTTCACACCTTCTTCCTGTTACAAGCACTTATCCACATTTATTTAAGTATCACAACTTAGTGACTCACAAGTC AATTCAGGGTTCGTTACTTGATCTCGAATCTGTCTCCCTGCTTTGGAACATCTTGCATGAGCATATTTTGTATCTCTCCA ATTTATCCCTAGTGACATTATTTAAATACGAAGACATTTGTGCTGATCCCGAATCTTTTTTCCCTTCTATCGCACAGTCG CTTTTTGGAAACGATTTCACTTTTAATCAAGAAGCATTCTCAGCGTATCTTCTAGGCTTGAAGGATCAGCCCTCCACTCC TGAAGATAAAAAGGGAGTGCAAATGGTTAGACGTGGTGAGTCCAAGGCTATTTCTAAGCTTTGGCTTAATCGTATTTCGG AAACTGAATCACTCTCGATATATAATAGCTGCCATAAGTTGATGAACTTTTTTGGCTATAGTCGATGA
Upstream 100 bases:
>100_bases AACAATTAATGCTACATCTTTTCAATTTGGCTTGGTTCTCTCTCTTTTCATGCTCTCATTCAAATATGGCAATTCTCGTG TTCCAGCTAGAAACTAATTT
Downstream 100 bases:
>100_bases CAGCTACCCTTTTTCTTTGTTGTCCATCTTTGAGCTTCTCAGGGAGCACAGCTCGTACAGCTAATTCATTTAACCGTCTA AAAAACCTTCTTAGTGTGTT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 315; Mature: 314
Protein sequence:
>315_residues MTVSLITGCHRSGSTWLGKTICYASNSIYFWEPFNLNSPQLYKSLISSSLNNNKYWYPFLPSTHQFWPDLIRVCSKRRLL YSNISFSDFFADSPKRTLFALKKAVALQFSLLTGGNIVIKDPLMLFSVEPALESSAVDNVVILTRDPRAFYTSVKKANWA FDFSHLLPVTSTYPHLFKYHNLVTHKSIQGSLLDLESVSLLWNILHEHILYLSNLSLVTLFKYEDICADPESFFPSIAQS LFGNDFTFNQEAFSAYLLGLKDQPSTPEDKKGVQMVRRGESKAISKLWLNRISETESLSIYNSCHKLMNFFGYSR
Sequences:
>Translated_315_residues MTVSLITGCHRSGSTWLGKTICYASNSIYFWEPFNLNSPQLYKSLISSSLNNNKYWYPFLPSTHQFWPDLIRVCSKRRLL YSNISFSDFFADSPKRTLFALKKAVALQFSLLTGGNIVIKDPLMLFSVEPALESSAVDNVVILTRDPRAFYTSVKKANWA FDFSHLLPVTSTYPHLFKYHNLVTHKSIQGSLLDLESVSLLWNILHEHILYLSNLSLVTLFKYEDICADPESFFPSIAQS LFGNDFTFNQEAFSAYLLGLKDQPSTPEDKKGVQMVRRGESKAISKLWLNRISETESLSIYNSCHKLMNFFGYSR >Mature_314_residues TVSLITGCHRSGSTWLGKTICYASNSIYFWEPFNLNSPQLYKSLISSSLNNNKYWYPFLPSTHQFWPDLIRVCSKRRLLY SNISFSDFFADSPKRTLFALKKAVALQFSLLTGGNIVIKDPLMLFSVEPALESSAVDNVVILTRDPRAFYTSVKKANWAF DFSHLLPVTSTYPHLFKYHNLVTHKSIQGSLLDLESVSLLWNILHEHILYLSNLSLVTLFKYEDICADPESFFPSIAQSL FGNDFTFNQEAFSAYLLGLKDQPSTPEDKKGVQMVRRGESKAISKLWLNRISETESLSIYNSCHKLMNFFGYSR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 36046; Mature: 35914
Theoretical pI: Translated: 8.85; Mature: 8.85
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTVSLITGCHRSGSTWLGKTICYASNSIYFWEPFNLNSPQLYKSLISSSLNNNKYWYPFL CEEEEEECCCCCCCCHHHHEEEEECCEEEEEECCCCCCHHHHHHHHHHCCCCCCEEECCC PSTHQFWPDLIRVCSKRRLLYSNISFSDFFADSPKRTLFALKKAVALQFSLLTGGNIVIK CCCHHHHHHHHHHHHCCCHHHCCCCHHHHHCCCCHHHHHHHHHHHHHEEEEEECCCEEEE DPLMLFSVEPALESSAVDNVVILTRDPRAFYTSVKKANWAFDFSHLLPVTSTYPHLFKYH CCEEEEEECHHHHHHCCCCEEEEECCCHHHHHHHHHCCCEECHHHHCCCCCCCHHHHHHH NLVTHKSIQGSLLDLESVSLLWNILHEHILYLSNLSLVTLFKYEDICADPESFFPSIAQS HHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEHHHHCCCHHHHHHHHHHH LFGNDFTFNQEAFSAYLLGLKDQPSTPEDKKGVQMVRRGESKAISKLWLNRISETESLSI HCCCCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHH YNSCHKLMNFFGYSR HHHHHHHHHHHCCCC >Mature Secondary Structure TVSLITGCHRSGSTWLGKTICYASNSIYFWEPFNLNSPQLYKSLISSSLNNNKYWYPFL EEEEEECCCCCCCCHHHHEEEEECCEEEEEECCCCCCHHHHHHHHHHCCCCCCEEECCC PSTHQFWPDLIRVCSKRRLLYSNISFSDFFADSPKRTLFALKKAVALQFSLLTGGNIVIK CCCHHHHHHHHHHHHCCCHHHCCCCHHHHHCCCCHHHHHHHHHHHHHEEEEEECCCEEEE DPLMLFSVEPALESSAVDNVVILTRDPRAFYTSVKKANWAFDFSHLLPVTSTYPHLFKYH CCEEEEEECHHHHHHCCCCEEEEECCCHHHHHHHHHCCCEECHHHHCCCCCCCHHHHHHH NLVTHKSIQGSLLDLESVSLLWNILHEHILYLSNLSLVTLFKYEDICADPESFFPSIAQS HHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEHHHHCCCHHHHHHHHHHH LFGNDFTFNQEAFSAYLLGLKDQPSTPEDKKGVQMVRRGESKAISKLWLNRISETESLSI HCCCCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHH YNSCHKLMNFFGYSR HHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA