| Definition | Synechococcus sp. RCC307, complete genome. |
|---|---|
| Accession | NC_009482 |
| Length | 2,224,914 |
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The map label for this gene is 148241299
Identifier: 148241299
GI number: 148241299
Start: 202620
End: 203888
Strand: Direct
Name: 148241299
Synonym: SynRCC307_0200
Alternate gene names: NA
Gene position: 202620-203888 (Clockwise)
Preceding gene: 148241298
Following gene: 148241300
Centisome position: 9.11
GC content: 35.7
Gene sequence:
>1269_bases ATGTTAGTTCTATTTACTTTGTGCCTGTTTCAAGCTACTAGGTGGTTTGGCATTGAGAGAAGTATATTCTACATTTTAAC ATGCATTCTTTTAGCACTTTTGATCGGCTTAATAGGTAAATATTCCATCACCAAACAGTCTACCCTGGCATTCTTATTAA TTGCAACCTTTTCTTTGCCTGCAATTATTAATTTTGCTCTTATACCAACTGTAAGTCTTTCACAGGCCCTTTTACCCTTT GTCGGCTTTCTTAAAGTCTTTCTACTTCTTCTTCTTCTTTCTAGCTTGCCTTTAACTACATCAATAAATTTTATCCACAG ATTCATGCTATTCGCAACCTCATATGGATTTTTGCAGTGGATTATTTCATCACTTGGTTTCGCACAAAGGGCGAGTTTGA TCGATTCGCATTATGAAATAGTTGGGTTTTTCCCTATCTGGCGAGTGAATTCACTGTGGGGTGAAAGTCAGCATTTTTCC CAAGTACTCGTCTTTTATCTTTTATTTTGCTTCGTCGAGAGTTCTCTTTTAAACCCCACCGAAAATATATCAAGAAAATT TGGCATTTATCTCTCCCTTTTTATGTTGGCAACAAGTGGCAGTACAACAGGTTATTTCTTAAGTCTTTTTGTCATTACTT CTCATCTTATCTTGTCTTTGACTAAACCTTTTTTGAGCAACTTACCCTTAAGTTACTCTTCACTCCACTCCCCACTGACA TCATTAAAAAAGATTTTCCATTTCATCCTTCGAAAGCAATATTTCTTTTTGTTATTGACAGTTTTTTTTGCTTTTACTGT ATTTGTGTCCACTTCTGATGCTCTTCTTCGTCAGTTTGCAAAGCAATCTAGTAGAGCGAGTCTAGTTGCTTCTTTTATAT TGGATACAAATAATCTATCAACTGGTTCTAGTGGCTGGGACTCTGGTACTCGTGCTCAATCTTTAATTCGCGCCAAAGAT TATTTATCGAATCCTTCTAAGCTTCCACAATATTCTCCTGAGCTTGCCACAAAATCCAAAGATGGGTTTTTACTTAACTT TGTCAGGTTTGGATTTATTGGTTCTTTCATGGTTACTATCTCACTTTTAATAGTATGTTATATATATAATTTTGACCCTT TAATGTCGTTGGGATTCCTCGCTTTAGTCTTAATATTTTGGTTTCGCGGTGAAACAATTAATGCTACATCTTTTCAATTT GGCTTGGTTCTCTCTCTTTTCATGCTCTCATTCAAATATGGCAATTCTCGTGTTCCAGCTAGAAACTAA
Upstream 100 bases:
>100_bases AGTCGCCAGTGAATACTCCTTACACGTCTGACATAGGCAATATAGGGGACTTTTGCCCAGAAGATATGCTTTTTGATCCT TCTCCCTATTATATTTAAAT
Downstream 100 bases:
>100_bases TTTATGACCGTTTCATTAATCACTGGCTGTCATCGTTCTGGGTCCACATGGCTTGGTAAAACTATTTGTTATGCTTCAAA CTCTATCTACTTTTGGGAGC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 422; Mature: 422
Protein sequence:
>422_residues MLVLFTLCLFQATRWFGIERSIFYILTCILLALLIGLIGKYSITKQSTLAFLLIATFSLPAIINFALIPTVSLSQALLPF VGFLKVFLLLLLLSSLPLTTSINFIHRFMLFATSYGFLQWIISSLGFAQRASLIDSHYEIVGFFPIWRVNSLWGESQHFS QVLVFYLLFCFVESSLLNPTENISRKFGIYLSLFMLATSGSTTGYFLSLFVITSHLILSLTKPFLSNLPLSYSSLHSPLT SLKKIFHFILRKQYFFLLLTVFFAFTVFVSTSDALLRQFAKQSSRASLVASFILDTNNLSTGSSGWDSGTRAQSLIRAKD YLSNPSKLPQYSPELATKSKDGFLLNFVRFGFIGSFMVTISLLIVCYIYNFDPLMSLGFLALVLIFWFRGETINATSFQF GLVLSLFMLSFKYGNSRVPARN
Sequences:
>Translated_422_residues MLVLFTLCLFQATRWFGIERSIFYILTCILLALLIGLIGKYSITKQSTLAFLLIATFSLPAIINFALIPTVSLSQALLPF VGFLKVFLLLLLLSSLPLTTSINFIHRFMLFATSYGFLQWIISSLGFAQRASLIDSHYEIVGFFPIWRVNSLWGESQHFS QVLVFYLLFCFVESSLLNPTENISRKFGIYLSLFMLATSGSTTGYFLSLFVITSHLILSLTKPFLSNLPLSYSSLHSPLT SLKKIFHFILRKQYFFLLLTVFFAFTVFVSTSDALLRQFAKQSSRASLVASFILDTNNLSTGSSGWDSGTRAQSLIRAKD YLSNPSKLPQYSPELATKSKDGFLLNFVRFGFIGSFMVTISLLIVCYIYNFDPLMSLGFLALVLIFWFRGETINATSFQF GLVLSLFMLSFKYGNSRVPARN >Mature_422_residues MLVLFTLCLFQATRWFGIERSIFYILTCILLALLIGLIGKYSITKQSTLAFLLIATFSLPAIINFALIPTVSLSQALLPF VGFLKVFLLLLLLSSLPLTTSINFIHRFMLFATSYGFLQWIISSLGFAQRASLIDSHYEIVGFFPIWRVNSLWGESQHFS QVLVFYLLFCFVESSLLNPTENISRKFGIYLSLFMLATSGSTTGYFLSLFVITSHLILSLTKPFLSNLPLSYSSLHSPLT SLKKIFHFILRKQYFFLLLTVFFAFTVFVSTSDALLRQFAKQSSRASLVASFILDTNNLSTGSSGWDSGTRAQSLIRAKD YLSNPSKLPQYSPELATKSKDGFLLNFVRFGFIGSFMVTISLLIVCYIYNFDPLMSLGFLALVLIFWFRGETINATSFQF GLVLSLFMLSFKYGNSRVPARN
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 47635; Mature: 47635
Theoretical pI: Translated: 10.16; Mature: 10.16
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLVLFTLCLFQATRWFGIERSIFYILTCILLALLIGLIGKYSITKQSTLAFLLIATFSLP CHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH AIINFALIPTVSLSQALLPFVGFLKVFLLLLLLSSLPLTTSINFIHRFMLFATSYGFLQW HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH IISSLGFAQRASLIDSHYEIVGFFPIWRVNSLWGESQHFSQVLVFYLLFCFVESSLLNPT HHHHHCHHHHHHHHHCCHHHHEEHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCH ENISRKFGIYLSLFMLATSGSTTGYFLSLFVITSHLILSLTKPFLSNLPLSYSSLHSPLT HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH SLKKIFHFILRKQYFFLLLTVFFAFTVFVSTSDALLRQFAKQSSRASLVASFILDTNNLS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCC TGSSGWDSGTRAQSLIRAKDYLSNPSKLPQYSPELATKSKDGFLLNFVRFGFIGSFMVTI CCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHH SLLIVCYIYNFDPLMSLGFLALVLIFWFRGETINATSFQFGLVLSLFMLSFKYGNSRVPA HHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCC RN CC >Mature Secondary Structure MLVLFTLCLFQATRWFGIERSIFYILTCILLALLIGLIGKYSITKQSTLAFLLIATFSLP CHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH AIINFALIPTVSLSQALLPFVGFLKVFLLLLLLSSLPLTTSINFIHRFMLFATSYGFLQW HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH IISSLGFAQRASLIDSHYEIVGFFPIWRVNSLWGESQHFSQVLVFYLLFCFVESSLLNPT HHHHHCHHHHHHHHHCCHHHHEEHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCH ENISRKFGIYLSLFMLATSGSTTGYFLSLFVITSHLILSLTKPFLSNLPLSYSSLHSPLT HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH SLKKIFHFILRKQYFFLLLTVFFAFTVFVSTSDALLRQFAKQSSRASLVASFILDTNNLS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCC TGSSGWDSGTRAQSLIRAKDYLSNPSKLPQYSPELATKSKDGFLLNFVRFGFIGSFMVTI CCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHH SLLIVCYIYNFDPLMSLGFLALVLIFWFRGETINATSFQFGLVLSLFMLSFKYGNSRVPA HHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCC RN CC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA