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The map label for this gene is capD [H]

Identifier: 148241271

GI number: 148241271

Start: 170579

End: 172513

Strand: Direct

Name: capD [H]

Synonym: SynRCC307_0172

Alternate gene names: 148241271

Gene position: 170579-172513 (Clockwise)

Preceding gene: 148241270

Following gene: 148241272

Centisome position: 7.67

GC content: 56.23

Gene sequence:

>1935_bases
TTGCGGCCAGCTTCCCGGCAACAGCTCAGTCCAGTGATCAGGCGCTTGCTGCTGCTCGCTGCTGATGCTGCGCTGCTGCC
GCTGGCTTTGTGGATGAGCTTCTGGCTGCGGCTTGGGTTGGATGAACCATGGTCTGAGCAGTGGCTGCAGTCGGGGCCAT
GGATGGTGGCTGCGCTTTGGGTATTCGGCCTGCCGCTTTTGCTATTCACGGGTCAATACAAGGGGTTAACTCGTTACGTC
GGCAGCCGTTCGCTGTATCAATTGGCAGGGCGCACGGCTGTGCTCACGTTGGCTCTTCTCGCCGTTGGTGAGCTGTTGCG
CCTGCCGTTACCTCCTCGCAGTTGTTGGATCTTGTTTTGGGTCTTGGCCACGGCCATGGCAGGCGCTTTGCGGTTCAGCC
TCCGTGATGTTTTTTTCAAATTCTCCAATCGCAACACACAAGCTTCTGCACAACGCGTTGTGATTTATGGCGCCGGTGCC
GCTGGAGTCCAGTTAGCCGCTTCCTTGCGCCATTCGGGAACCCATCGGTTGGTGGCGTTTGTTGATGACGATCCTTTTTT
ATGGGGACGTTCCATCGGATCGATAGAGATCAAGTCTGCAAATCAGCTGCCGGCGCTCAGCCAGCGATTCGATCAGGTTC
TACTGGCTATTCCCTCCATCCAAAAAGCTGAGCGCCGCCGCATTGTTGATTCTGTTCAGACCTTGGGTTGCTCGATTCTC
GAGGTGCCCTCGATTGATGCTTTGACCTCTGGTCGAGCGTCGATTGACGCCTTGCATCCCATTGCGATTGAGGACTTGTT
GGGCCGTGATCAGGCTGCTCCAGATCCACAACTTTTAGGCCGAGCGTTTGCCGGAAAAGTGGTGTGTGTCACCGGTGCAG
GGGGATCGATTGGCTCGGAGCTATGCCGCCAAATTGTGCAACTGCAGCCTGCGGCCTTGCTGATGCTGGAACGCAGCGAG
CCAGCTCTGTATGCCATCGACCAAGAGCTGAGCAATCGCGGCCTAGATGCTGTGAAGCTGCGGCCGGTGTTGGGCTCTGC
CTCTGACCAGGCGTTGGTTCGGGAACTCTTTGCGCGTGAACAGGTTCAGGTTGTCGTTCATGCGGCTGCCTACAAACATG
TTCCACTGGTGGAAGCCAATCCTTTGGCGGGCATCGCCAATAACGTTTTCTCCACGCGAGTGATCTGCCAAACCGCAGCA
GCTTTAGGCCTTGAGCGGGTGTTGTTGATCTCAACCGATAAGGCCGTGCGTCCCACCAACGTGATGGGAGCCTCTAAGCG
TTTAGCGGAGTTGGTTGTTCAGGGTGCGGCCCAGACGAGTGAAACAACTTCTTTTTCCATGGTTCGTTTTGGCAATGTCT
TGGGTTCGTCGGGGTCGGTGGTGCCGTTATTCACCAAGCAGATCGGCGCCGGTGGGCCGATCACCCTCACCCACCCCGAG
ATTGTTCGCTATTTCATGACGATTCCTGAGGCCACCCAGCTGGTTCTCCAGGCTGCTGGGATGGCAACAGGTGGTGAGGT
GTTCGTATTGGATATGGGTGAGCCGGTGCGGATTCACGATTTGGCTCAGCAGATGGTGAAGCTCAGTGGCTTGCAGCTCA
AAGACGAGGCCAATCCCGATGGAGACATTGAAATCAAATGCACAGGCTTGAGGCCTGGAGAAAAGCTCTACGAGGAGCTG
CTGATTGATGCTCACGCGCAGCCCACTGCCCATCCTTTAATTTGTTGCGCCCAAGAAAACAGCTGGCCAGCTGCACAGCT
CGAGCTTCTTTTGGATCAACTGCAGCAGATTGTGCAACAGCAGGATCTTGCGGCTGTATTGGACTTACTCAAGCAACTGG
TGCCTGAATGGCAGCAGGGTGCTGAAGTGAGCACTTCGGCCAAGCTCTTGCCGTTTCCAGTTGTTCCCTCCAGGTCGACA
GCTCAGGCGGGATGA

Upstream 100 bases:

>100_bases
GCTCACAGGCGTCCTTTTGGGCATCCCATTGAGCTGGCACAGGGCCAGTGATAACCAGTTCACGCAAATTTAGTCTCACC
GTGAATAAATGAGATAGCCC

Downstream 100 bases:

>100_bases
GTTGGCGCGCCCCTTGGTTGCGGGAGCGACTGCTGTTGCTGTCGTTGGCGCTGTGGGATCTGGTGGTGGTGTGGGCCATG
TACGGCTCCATTTATCGATT

Product: nucleotide-diphosphate-sugar epimerase, membrane associated

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 644; Mature: 644

Protein sequence:

>644_residues
MRPASRQQLSPVIRRLLLLAADAALLPLALWMSFWLRLGLDEPWSEQWLQSGPWMVAALWVFGLPLLLFTGQYKGLTRYV
GSRSLYQLAGRTAVLTLALLAVGELLRLPLPPRSCWILFWVLATAMAGALRFSLRDVFFKFSNRNTQASAQRVVIYGAGA
AGVQLAASLRHSGTHRLVAFVDDDPFLWGRSIGSIEIKSANQLPALSQRFDQVLLAIPSIQKAERRRIVDSVQTLGCSIL
EVPSIDALTSGRASIDALHPIAIEDLLGRDQAAPDPQLLGRAFAGKVVCVTGAGGSIGSELCRQIVQLQPAALLMLERSE
PALYAIDQELSNRGLDAVKLRPVLGSASDQALVRELFAREQVQVVVHAAAYKHVPLVEANPLAGIANNVFSTRVICQTAA
ALGLERVLLISTDKAVRPTNVMGASKRLAELVVQGAAQTSETTSFSMVRFGNVLGSSGSVVPLFTKQIGAGGPITLTHPE
IVRYFMTIPEATQLVLQAAGMATGGEVFVLDMGEPVRIHDLAQQMVKLSGLQLKDEANPDGDIEIKCTGLRPGEKLYEEL
LIDAHAQPTAHPLICCAQENSWPAAQLELLLDQLQQIVQQQDLAAVLDLLKQLVPEWQQGAEVSTSAKLLPFPVVPSRST
AQAG

Sequences:

>Translated_644_residues
MRPASRQQLSPVIRRLLLLAADAALLPLALWMSFWLRLGLDEPWSEQWLQSGPWMVAALWVFGLPLLLFTGQYKGLTRYV
GSRSLYQLAGRTAVLTLALLAVGELLRLPLPPRSCWILFWVLATAMAGALRFSLRDVFFKFSNRNTQASAQRVVIYGAGA
AGVQLAASLRHSGTHRLVAFVDDDPFLWGRSIGSIEIKSANQLPALSQRFDQVLLAIPSIQKAERRRIVDSVQTLGCSIL
EVPSIDALTSGRASIDALHPIAIEDLLGRDQAAPDPQLLGRAFAGKVVCVTGAGGSIGSELCRQIVQLQPAALLMLERSE
PALYAIDQELSNRGLDAVKLRPVLGSASDQALVRELFAREQVQVVVHAAAYKHVPLVEANPLAGIANNVFSTRVICQTAA
ALGLERVLLISTDKAVRPTNVMGASKRLAELVVQGAAQTSETTSFSMVRFGNVLGSSGSVVPLFTKQIGAGGPITLTHPE
IVRYFMTIPEATQLVLQAAGMATGGEVFVLDMGEPVRIHDLAQQMVKLSGLQLKDEANPDGDIEIKCTGLRPGEKLYEEL
LIDAHAQPTAHPLICCAQENSWPAAQLELLLDQLQQIVQQQDLAAVLDLLKQLVPEWQQGAEVSTSAKLLPFPVVPSRST
AQAG
>Mature_644_residues
MRPASRQQLSPVIRRLLLLAADAALLPLALWMSFWLRLGLDEPWSEQWLQSGPWMVAALWVFGLPLLLFTGQYKGLTRYV
GSRSLYQLAGRTAVLTLALLAVGELLRLPLPPRSCWILFWVLATAMAGALRFSLRDVFFKFSNRNTQASAQRVVIYGAGA
AGVQLAASLRHSGTHRLVAFVDDDPFLWGRSIGSIEIKSANQLPALSQRFDQVLLAIPSIQKAERRRIVDSVQTLGCSIL
EVPSIDALTSGRASIDALHPIAIEDLLGRDQAAPDPQLLGRAFAGKVVCVTGAGGSIGSELCRQIVQLQPAALLMLERSE
PALYAIDQELSNRGLDAVKLRPVLGSASDQALVRELFAREQVQVVVHAAAYKHVPLVEANPLAGIANNVFSTRVICQTAA
ALGLERVLLISTDKAVRPTNVMGASKRLAELVVQGAAQTSETTSFSMVRFGNVLGSSGSVVPLFTKQIGAGGPITLTHPE
IVRYFMTIPEATQLVLQAAGMATGGEVFVLDMGEPVRIHDLAQQMVKLSGLQLKDEANPDGDIEIKCTGLRPGEKLYEEL
LIDAHAQPTAHPLICCAQENSWPAAQLELLLDQLQQIVQQQDLAAVLDLLKQLVPEWQQGAEVSTSAKLLPFPVVPSRST
AQAG

Specific function: Required for the biosynthesis of type 1 capsular polysaccharide [H]

COG id: COG1086

COG function: function code MG; Predicted nucleoside-diphosphate sugar epimerases

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the polysaccharide synthase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016040
- InterPro:   IPR003869 [H]

Pfam domain/function: PF02719 Polysacc_synt_2 [H]

EC number: NA

Molecular weight: Translated: 69586; Mature: 69586

Theoretical pI: Translated: 7.23; Mature: 7.23

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRPASRQQLSPVIRRLLLLAADAALLPLALWMSFWLRLGLDEPWSEQWLQSGPWMVAALW
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCHHHHHHH
VFGLPLLLFTGQYKGLTRYVGSRSLYQLAGRTAVLTLALLAVGELLRLPLPPRSCWILFW
HHHHHHHHHCCCCCHHHHHHCCHHHHHHHCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
VLATAMAGALRFSLRDVFFKFSNRNTQASAQRVVIYGAGAAGVQLAASLRHSGTHRLVAF
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCHHHHHHHHHHHCCCCEEEEEE
VDDDPFLWGRSIGSIEIKSANQLPALSQRFDQVLLAIPSIQKAERRRIVDSVQTLGCSIL
ECCCCCEECCCCCCEEECCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCEE
EVPSIDALTSGRASIDALHPIAIEDLLGRDQAAPDPQLLGRAFAGKVVCVTGAGGSIGSE
ECCCCCHHCCCCCCHHHCCHHHHHHHHCCCCCCCCHHHHHHHHCCCEEEEECCCCCHHHH
LCRQIVQLQPAALLMLERSEPALYAIDQELSNRGLDAVKLRPVLGSASDQALVRELFARE
HHHHHHHCCCHHEEEEECCCCCEEEECHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHH
QVQVVVHAAAYKHVPLVEANPLAGIANNVFSTRVICQTAAALGLERVLLISTDKAVRPTN
HHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCC
VMGASKRLAELVVQGAAQTSETTSFSMVRFGNVLGSSGSVVPLFTKQIGAGGPITLTHPE
CCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCEEEEHHHHCCCCCCEEECCHH
IVRYFMTIPEATQLVLQAAGMATGGEVFVLDMGEPVRIHDLAQQMVKLSGLQLKDEANPD
HHHHHHHCCHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCEEECCCCCC
GDIEIKCTGLRPGEKLYEELLIDAHAQPTAHPLICCAQENSWPAAQLELLLDQLQQIVQQ
CCEEEEEECCCCHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHH
QDLAAVLDLLKQLVPEWQQGAEVSTSAKLLPFPVVPSRSTAQAG
HHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCCCCCCCC
>Mature Secondary Structure
MRPASRQQLSPVIRRLLLLAADAALLPLALWMSFWLRLGLDEPWSEQWLQSGPWMVAALW
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCHHHHHHH
VFGLPLLLFTGQYKGLTRYVGSRSLYQLAGRTAVLTLALLAVGELLRLPLPPRSCWILFW
HHHHHHHHHCCCCCHHHHHHCCHHHHHHHCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
VLATAMAGALRFSLRDVFFKFSNRNTQASAQRVVIYGAGAAGVQLAASLRHSGTHRLVAF
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCHHHHHHHHHHHCCCCEEEEEE
VDDDPFLWGRSIGSIEIKSANQLPALSQRFDQVLLAIPSIQKAERRRIVDSVQTLGCSIL
ECCCCCEECCCCCCEEECCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCEE
EVPSIDALTSGRASIDALHPIAIEDLLGRDQAAPDPQLLGRAFAGKVVCVTGAGGSIGSE
ECCCCCHHCCCCCCHHHCCHHHHHHHHCCCCCCCCHHHHHHHHCCCEEEEECCCCCHHHH
LCRQIVQLQPAALLMLERSEPALYAIDQELSNRGLDAVKLRPVLGSASDQALVRELFARE
HHHHHHHCCCHHEEEEECCCCCEEEECHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHH
QVQVVVHAAAYKHVPLVEANPLAGIANNVFSTRVICQTAAALGLERVLLISTDKAVRPTN
HHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCC
VMGASKRLAELVVQGAAQTSETTSFSMVRFGNVLGSSGSVVPLFTKQIGAGGPITLTHPE
CCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCEEEEHHHHCCCCCCEEECCHH
IVRYFMTIPEATQLVLQAAGMATGGEVFVLDMGEPVRIHDLAQQMVKLSGLQLKDEANPD
HHHHHHHCCHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCEEECCCCCC
GDIEIKCTGLRPGEKLYEELLIDAHAQPTAHPLICCAQENSWPAAQLELLLDQLQQIVQQ
CCEEEEEECCCCHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHH
QDLAAVLDLLKQLVPEWQQGAEVSTSAKLLPFPVVPSRSTAQAG
HHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7961465 [H]