| Definition | Synechococcus sp. RCC307, complete genome. |
|---|---|
| Accession | NC_009482 |
| Length | 2,224,914 |
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The map label for this gene is 148241270
Identifier: 148241270
GI number: 148241270
Start: 169358
End: 170551
Strand: Direct
Name: 148241270
Synonym: SynRCC307_0171
Alternate gene names: NA
Gene position: 169358-170551 (Clockwise)
Preceding gene: 148241265
Following gene: 148241271
Centisome position: 7.61
GC content: 58.21
Gene sequence:
>1194_bases ATGAAAGACCCGGGAAAACTACGTGGTATGCCTCTTCTTTCTGGAAGCAGGTGGCCAGTGAGGCATCTGCCTAAATGGCG CGCAGCGGTCGATGCCCTGTTCTTGATTTCGATCGTGCTGTTCTTGTGGCCCCTGGATCCCTGGATCAGCAGCATTCCGG CTGTTCTCTGGGTGCTGCTTCAGTTGTTGGTGGCTCCAGTTCAGCGCCGTTGGGCCGCTTGGCCGATGCTGTTTGTGCTG TTGCTGTTCAGCCGCAGTTGGTGGCTCAACCAAATGCCCCATCCAGTGGCTGCCCAGGATGGGGTATTGGTTGCCGGAGC TTTGTTAGCGGGAGCTTGTGTGGCCCCGCAGCGTTGGCAGCTGCTGTTGCGTCTTCCCTTGCTGGTGTTGCCGCTGTTGC TGTTTGAGATGGGTGCCAAGCCCTGGACGCCCAATCCGTTGGCAGGTGCTAATCAGGGGGGCTATCTGTTGGGGTTGATT TGGCTGCTGGCAATCGCTTGGTTCCGCCAGGGCAACCAGCCTCATTTGCAGCGGGTGCTGGCTGGCGTGGCAACGGCCCT GGCTGCGGTGATGGTGTGGCAGACAGGTTCTCGTGCTGCGTTTGTAGCCGCCGTTGTTTCAGCCGCCTTGTTGTGGATTC AGCAGGGCATTGGCTTAGGTCAGGTTTGCAAGCGTGGTTTCTTGCTGCTGGGTTTTGGTGCGGCAGCTTTGGCGGCTAAA CAGTTGCTTCGCCCCTCCAGCACAGGGATCCCAGGAATCGATCTCAGCTCTGATACCGGCCGGTTGGCGATCGCTCAGTG TTATGGCGCGATTCCGTTCAGCGGTAACAACCGGTTCCTCTATGGCGTCGGTTTCGACCGCGCTGGTGAGTTTTGTTCCG ACCCCATCAACGGTGGTGTGGCTGATCATGCCCACAACATTTATCTCCAGCTCTTTGCAAGCTCAGGGGTGCTGGGGGTG TTCGGGCTTTTTCTCCTTCTGGCCTTGCTGGTGCAGGCATGGCGCTCAGCGGCCCCTGTGATGGACCCATTTCCGCTAGT TGCTGGACAGCTGGCGCTGCTCTACACGCTGATTCAGGGCTTCCTCGATCTTTCGCTTCTGCATTGGCCTGTCACCTTGG TGCTCACAGGCGTCCTTTTGGGCATCCCATTGAGCTGGCACAGGGCCAGTGATAACCAGTTCACGCAAATTTAG
Upstream 100 bases:
>100_bases TCACTTGGCTGGTTGGTGTAATTTCCTGGCTCAGTACTGGTTGCACAGCGCTGAGTGAAAGCATGGCTGCAGCAACGGCG CGGCTCAGCACAAGACTCAG
Downstream 100 bases:
>100_bases TCTCACCGTGAATAAATGAGATAGCCCTTGCGGCCAGCTTCCCGGCAACAGCTCAGTCCAGTGATCAGGCGCTTGCTGCT GCTCGCTGCTGATGCTGCGC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 397; Mature: 397
Protein sequence:
>397_residues MKDPGKLRGMPLLSGSRWPVRHLPKWRAAVDALFLISIVLFLWPLDPWISSIPAVLWVLLQLLVAPVQRRWAAWPMLFVL LLFSRSWWLNQMPHPVAAQDGVLVAGALLAGACVAPQRWQLLLRLPLLVLPLLLFEMGAKPWTPNPLAGANQGGYLLGLI WLLAIAWFRQGNQPHLQRVLAGVATALAAVMVWQTGSRAAFVAAVVSAALLWIQQGIGLGQVCKRGFLLLGFGAAALAAK QLLRPSSTGIPGIDLSSDTGRLAIAQCYGAIPFSGNNRFLYGVGFDRAGEFCSDPINGGVADHAHNIYLQLFASSGVLGV FGLFLLLALLVQAWRSAAPVMDPFPLVAGQLALLYTLIQGFLDLSLLHWPVTLVLTGVLLGIPLSWHRASDNQFTQI
Sequences:
>Translated_397_residues MKDPGKLRGMPLLSGSRWPVRHLPKWRAAVDALFLISIVLFLWPLDPWISSIPAVLWVLLQLLVAPVQRRWAAWPMLFVL LLFSRSWWLNQMPHPVAAQDGVLVAGALLAGACVAPQRWQLLLRLPLLVLPLLLFEMGAKPWTPNPLAGANQGGYLLGLI WLLAIAWFRQGNQPHLQRVLAGVATALAAVMVWQTGSRAAFVAAVVSAALLWIQQGIGLGQVCKRGFLLLGFGAAALAAK QLLRPSSTGIPGIDLSSDTGRLAIAQCYGAIPFSGNNRFLYGVGFDRAGEFCSDPINGGVADHAHNIYLQLFASSGVLGV FGLFLLLALLVQAWRSAAPVMDPFPLVAGQLALLYTLIQGFLDLSLLHWPVTLVLTGVLLGIPLSWHRASDNQFTQI >Mature_397_residues MKDPGKLRGMPLLSGSRWPVRHLPKWRAAVDALFLISIVLFLWPLDPWISSIPAVLWVLLQLLVAPVQRRWAAWPMLFVL LLFSRSWWLNQMPHPVAAQDGVLVAGALLAGACVAPQRWQLLLRLPLLVLPLLLFEMGAKPWTPNPLAGANQGGYLLGLI WLLAIAWFRQGNQPHLQRVLAGVATALAAVMVWQTGSRAAFVAAVVSAALLWIQQGIGLGQVCKRGFLLLGFGAAALAAK QLLRPSSTGIPGIDLSSDTGRLAIAQCYGAIPFSGNNRFLYGVGFDRAGEFCSDPINGGVADHAHNIYLQLFASSGVLGV FGLFLLLALLVQAWRSAAPVMDPFPLVAGQLALLYTLIQGFLDLSLLHWPVTLVLTGVLLGIPLSWHRASDNQFTQI
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 43047; Mature: 43047
Theoretical pI: Translated: 10.55; Mature: 10.55
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKDPGKLRGMPLLSGSRWPVRHLPKWRAAVDALFLISIVLFLWPLDPWISSIPAVLWVLL CCCCCCCCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH QLLVAPVQRRWAAWPMLFVLLLFSRSWWLNQMPHPVAAQDGVLVAGALLAGACVAPQRWQ HHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHH LLLRLPLLVLPLLLFEMGAKPWTPNPLAGANQGGYLLGLIWLLAIAWFRQGNQPHLQRVL HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHH AGVATALAAVMVWQTGSRAAFVAAVVSAALLWIQQGIGLGQVCKRGFLLLGFGAAALAAK HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCEEEEHHHHHHHHH QLLRPSSTGIPGIDLSSDTGRLAIAQCYGAIPFSGNNRFLYGVGFDRAGEFCSDPINGGV HHHCCCCCCCCCCCCCCCCCCEEHHHHHCCCEECCCCEEEEECCCHHCCHHHCCCCCCCH ADHAHNIYLQLFASSGVLGVFGLFLLLALLVQAWRSAAPVMDPFPLVAGQLALLYTLIQG HHHHHHHHHEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH FLDLSLLHWPVTLVLTGVLLGIPLSWHRASDNQFTQI HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC >Mature Secondary Structure MKDPGKLRGMPLLSGSRWPVRHLPKWRAAVDALFLISIVLFLWPLDPWISSIPAVLWVLL CCCCCCCCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH QLLVAPVQRRWAAWPMLFVLLLFSRSWWLNQMPHPVAAQDGVLVAGALLAGACVAPQRWQ HHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHH LLLRLPLLVLPLLLFEMGAKPWTPNPLAGANQGGYLLGLIWLLAIAWFRQGNQPHLQRVL HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHH AGVATALAAVMVWQTGSRAAFVAAVVSAALLWIQQGIGLGQVCKRGFLLLGFGAAALAAK HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCEEEEHHHHHHHHH QLLRPSSTGIPGIDLSSDTGRLAIAQCYGAIPFSGNNRFLYGVGFDRAGEFCSDPINGGV HHHCCCCCCCCCCCCCCCCCCEEHHHHHCCCEECCCCEEEEECCCHHCCHHHCCCCCCCH ADHAHNIYLQLFASSGVLGVFGLFLLLALLVQAWRSAAPVMDPFPLVAGQLALLYTLIQG HHHHHHHHHEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH FLDLSLLHWPVTLVLTGVLLGIPLSWHRASDNQFTQI HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA