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The map label for this gene is ruvB

Identifier: 148241223

GI number: 148241223

Start: 119756

End: 120790

Strand: Direct

Name: ruvB

Synonym: SynRCC307_0124

Alternate gene names: 148241223

Gene position: 119756-120790 (Clockwise)

Preceding gene: 148241221

Following gene: 148241224

Centisome position: 5.38

GC content: 64.54

Gene sequence:

>1035_bases
ATGGCGATTCAGTCCTCCAGCAGCGGCAGCAAGCCACCAGCGCCCAAGCGTCTGGTGGCCCCAGAGGCCACGGCTGCTGA
GGGTGATGGCGGCCGGGATGAGGGTCTGAGGCCCCGCCGCTTGGCTGATTACATCGGTCAGAGCGAGCTCAAGCAGGTGC
TGGGGATTGCTGTTGAGGCCACCCGCCTGCGCAACGACGCGCTCGACCATGTGCTGCTTTATGGCCCACCGGGTCTGGGC
AAAACCACCATGGCGTTGGTGCTCGCCGAAGAGCTGGGTGTGTCCTGCCGCATCGCTAGTGCGCCAGCCCTTGAGCGTCC
GCGCGACATCGTTGGCCTGTTGATGAATCTGCAGCCACGCGAGCTGCTCTTTATTGATGAAATTCACCGGCTGAACCGGG
TGGCCGAGGAGCTGCTCTATCCAGCGATGGAGGATTTTCGCCTTGATCTCACCGTGGGCGCCGGTCCAGCGGCCCGCACC
CGCAGTTTGGAGCTTCCGCCGTTCACTTTGGTGGGGGCGACCACCAAAGCCGGGTCCTTGAGCTCACCATTGCGGGATCG
TTTTGGCTTAATTCAGCGGCTGGAGTTCTACAGCTGCAGTGATCTCGAGGCGATCGTCTCTCGCTCGGCCCAACTGCTGC
AGTTGGAGTTAGCGGCTGAGGCCGCCGCTGAAATCGCCCGGCGCTGCCGGGGCACCCCGCGGATCGCCAATCGCCTGCTG
CGGCGTGTGCGTGATTTCGCCAGCGTTCGCGGGATTGCCGCGGTGGGAGCACCAGTGGTGGTGGAAGCCTTGGCGATGCA
CCGGGTGGATGGCCGCGGCCTCGATCCCTCCGACCGCCGTTTGCTCAGCCTGCTGGAGACCAGCTACGGCGGAGGCCCAG
CGGGTCTCGATACCCTGGCAGCAGCGTTGGGTGAAGACCCCGACACGCTGGAAGCTGTGGTGGAACCGTTTCTGTTGCAA
CTTGGTTTTCTGCAGCGCACCCCTCGCGGGCGTGTGTTGACTGACGCCGGCAGGGCCCATTTGGAGGCCGCTTGA

Upstream 100 bases:

>100_bases
GGCGCTTTTTGGCTGCCGCTTTTGCTCCCTTGCCCTTGCCGGCCACGCCCTCGCCCTTTTCATTTCATGCTGACGCATGG
ATTGTCCGTAACCTCGAGCC

Downstream 100 bases:

>100_bases
TGGCTTGGCTGATGCCAACTCTGTTGGCGTTGCTGTTGGGCACCACCGGGCTGGCCGATCAGTTTCACCAGGCTTTGGAG
GCCAGCCAACAGGGACGTTT

Product: Holliday junction DNA helicase RuvB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 344; Mature: 343

Protein sequence:

>344_residues
MAIQSSSSGSKPPAPKRLVAPEATAAEGDGGRDEGLRPRRLADYIGQSELKQVLGIAVEATRLRNDALDHVLLYGPPGLG
KTTMALVLAEELGVSCRIASAPALERPRDIVGLLMNLQPRELLFIDEIHRLNRVAEELLYPAMEDFRLDLTVGAGPAART
RSLELPPFTLVGATTKAGSLSSPLRDRFGLIQRLEFYSCSDLEAIVSRSAQLLQLELAAEAAAEIARRCRGTPRIANRLL
RRVRDFASVRGIAAVGAPVVVEALAMHRVDGRGLDPSDRRLLSLLETSYGGGPAGLDTLAAALGEDPDTLEAVVEPFLLQ
LGFLQRTPRGRVLTDAGRAHLEAA

Sequences:

>Translated_344_residues
MAIQSSSSGSKPPAPKRLVAPEATAAEGDGGRDEGLRPRRLADYIGQSELKQVLGIAVEATRLRNDALDHVLLYGPPGLG
KTTMALVLAEELGVSCRIASAPALERPRDIVGLLMNLQPRELLFIDEIHRLNRVAEELLYPAMEDFRLDLTVGAGPAART
RSLELPPFTLVGATTKAGSLSSPLRDRFGLIQRLEFYSCSDLEAIVSRSAQLLQLELAAEAAAEIARRCRGTPRIANRLL
RRVRDFASVRGIAAVGAPVVVEALAMHRVDGRGLDPSDRRLLSLLETSYGGGPAGLDTLAAALGEDPDTLEAVVEPFLLQ
LGFLQRTPRGRVLTDAGRAHLEAA
>Mature_343_residues
AIQSSSSGSKPPAPKRLVAPEATAAEGDGGRDEGLRPRRLADYIGQSELKQVLGIAVEATRLRNDALDHVLLYGPPGLGK
TTMALVLAEELGVSCRIASAPALERPRDIVGLLMNLQPRELLFIDEIHRLNRVAEELLYPAMEDFRLDLTVGAGPAARTR
SLELPPFTLVGATTKAGSLSSPLRDRFGLIQRLEFYSCSDLEAIVSRSAQLLQLELAAEAAAEIARRCRGTPRIANRLLR
RVRDFASVRGIAAVGAPVVVEALAMHRVDGRGLDPSDRRLLSLLETSYGGGPAGLDTLAAALGEDPDTLEAVVEPFLLQL
GFLQRTPRGRVLTDAGRAHLEAA

Specific function: The ruvA-ruvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is an helicase that mediates the Holliday

COG id: COG2255

COG function: function code L; Holliday junction resolvasome, helicase subunit

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ruvB family

Homologues:

Organism=Escherichia coli, GI1788167, Length=309, Percent_Identity=55.9870550161812, Blast_Score=367, Evalue=1e-103,
Organism=Escherichia coli, GI1787119, Length=192, Percent_Identity=31.25, Blast_Score=67, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RUVB_SYNR3 (A5GQ68)

Other databases:

- EMBL:   CT978603
- RefSeq:   YP_001226380.1
- ProteinModelPortal:   A5GQ68
- SMR:   A5GQ68
- STRING:   A5GQ68
- GeneID:   5156565
- GenomeReviews:   CT978603_GR
- KEGG:   syr:SynRCC307_0124
- eggNOG:   COG2255
- HOGENOM:   HBG339960
- OMA:   EKFDGGP
- ProtClustDB:   PRK00080
- HAMAP:   MF_00016
- InterPro:   IPR003593
- InterPro:   IPR004605
- InterPro:   IPR008823
- InterPro:   IPR008824
- InterPro:   IPR011991
- Gene3D:   G3DSA:1.10.10.10
- ProDom:   PD005323
- SMART:   SM00382
- TIGRFAMs:   TIGR00635

Pfam domain/function: PF05491 RuvB_C; PF05496 RuvB_N

EC number: =3.6.4.12

Molecular weight: Translated: 36896; Mature: 36765

Theoretical pI: Translated: 6.54; Mature: 6.54

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAIQSSSSGSKPPAPKRLVAPEATAAEGDGGRDEGLRPRRLADYIGQSELKQVLGIAVEA
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCHHHHHHHHHHHHHH
TRLRNDALDHVLLYGPPGLGKTTMALVLAEELGVSCRIASAPALERPRDIVGLLMNLQPR
HHHHHHHHCEEEEECCCCCCHHHHHHHHHHHHCCEEEECCCCCCCCCHHHHHHHHCCCCH
ELLFIDEIHRLNRVAEELLYPAMEDFRLDLTVGAGPAARTRSLELPPFTLVGATTKAGSL
HHHHHHHHHHHHHHHHHHHHHHHHHCEEEEEECCCCCCCCCCCCCCCEEEEECCCCCCCC
SSPLRDRFGLIQRLEFYSCSDLEAIVSRSAQLLQLELAAEAAAEIARRCRGTPRIANRLL
CCHHHHHHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
RRVRDFASVRGIAAVGAPVVVEALAMHRVDGRGLDPSDRRLLSLLETSYGGGPAGLDTLA
HHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHH
AALGEDPDTLEAVVEPFLLQLGFLQRTPRGRVLTDAGRAHLEAA
HHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCHHCCCC
>Mature Secondary Structure 
AIQSSSSGSKPPAPKRLVAPEATAAEGDGGRDEGLRPRRLADYIGQSELKQVLGIAVEA
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCHHHHHHHHHHHHHH
TRLRNDALDHVLLYGPPGLGKTTMALVLAEELGVSCRIASAPALERPRDIVGLLMNLQPR
HHHHHHHHCEEEEECCCCCCHHHHHHHHHHHHCCEEEECCCCCCCCCHHHHHHHHCCCCH
ELLFIDEIHRLNRVAEELLYPAMEDFRLDLTVGAGPAARTRSLELPPFTLVGATTKAGSL
HHHHHHHHHHHHHHHHHHHHHHHHHCEEEEEECCCCCCCCCCCCCCCEEEEECCCCCCCC
SSPLRDRFGLIQRLEFYSCSDLEAIVSRSAQLLQLELAAEAAAEIARRCRGTPRIANRLL
CCHHHHHHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
RRVRDFASVRGIAAVGAPVVVEALAMHRVDGRGLDPSDRRLLSLLETSYGGGPAGLDTLA
HHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHH
AALGEDPDTLEAVVEPFLLQLGFLQRTPRGRVLTDAGRAHLEAA
HHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA