| Definition | Vibrio cholerae O395 chromosome 2, complete sequence. |
|---|---|
| Accession | NC_009457 |
| Length | 3,024,069 |
Click here to switch to the map view.
The map label for this gene is 147675616
Identifier: 147675616
GI number: 147675616
Start: 2520094
End: 2522553
Strand: Reverse
Name: 147675616
Synonym: VC0395_A2365
Alternate gene names: NA
Gene position: 2522553-2520094 (Counterclockwise)
Preceding gene: 147674930
Following gene: 147674376
Centisome position: 83.42
GC content: 40.57
Gene sequence:
>2460_bases ATGGCAAAAAGTCGCTTATCTGTTTCCAGAAATCAACATAAACCAATCACACAACTAAAGACTAAGGATAATGTCACTTC ATTAGACTTGAGCTTTGAATTGCATCAACGAGGGATGGCATACAGTATCAAATATAACCTTCTTGATTGGTGCCATGAGC AGTGTGACCCTCAAAAACCATTAGTACAACCGTCTCGATTGAATAGGATGCAAAAGCTAAGGGCGTGGGTTAATCAAGAG AGAAAAAATCAAAGTAGTGAAGCCTATATAAGAGTTAAATTAGCGAGTTTAAAGCAGTATATTTCTTTTTGTGACTTTAA TATGCTCGACCCTTTTTCTCAGGGGGGATACCTTTCTTACGTTGGTAACTCAGGTCAATTGTGGCGTTTAGTTAACGCGG CTAATGAGCCCAAAAGATATCACTTTCAGTATCATGACGGTGAAGAGGCTGGCTTGTTGGAGGACACTGCTTTTATCCAA AAGACCTTACTCGATACACTACTTACAGTGCTTGATTTTGATGTGTCAGAGTGGCAAGCCACGCTTAAACCCTTCTCAAT AAAGAATAGTGAATCATCAACACAGCCGTATACATCAAGTGAATGGTATGCATTAGTTAAACGAACTCAACTATTCTTTT TCTCTCTAGCAACTCAACTTATTGCGTTTAAAGAGGAAAACCCCGAAGCCCCTCCGCCTCAATGCTTAGAAGGCATTGTA GTTGATAGAAATAATGGTCGGGACATCACAATTACACTGAGGGGCAAGGACGGCTCTGTGAGTCCGTTTAATCAATGCAT GGCGGCAGCTTACACCCTATTTGCCTACTACACTGCATTTAACGACACAGTAATAAAAGATGTTCGCCATCCCATTAAAG TGATTACATCGAAGGTAGAAGGTCGCACATCGAAAACTGCTCAAGTTCGTGCTTACAAAAGTCGCGCTTCAAAAGACGTA AAAGCGTTGTTTGCAGGTTCAGATGAAAACTTGCATCCCGAAGCTATTGAAAAAGAGGCAGGGTTTATTGTTGCCGAAAT CAATAAGCGCGACGCTGTTGGAAAAATAGACGGAATCACTTTTATTCAAACTCTCGAACTCCTCTCTAAATCCTATAGCA ATGATCCTTTTGATACATTGATATATTTTCTTGATAAAGAAGGAGAAAAAGACAAGGTCAATGTGAGTCATGCTTTATTG AAACTATCGCAGAACTTAAATTTGCTTTCTAGCCGAAGAGGTGAATTAACCGAGCATTTGATAAAAACCTACACCGACAT TGTTGAGAATCAAAATATGCCCATCTTCAATTGGACCCAGAGAGAAGATGGCGCAAGGACAATGAATAAACAGGTCATCT ATCTTAATAAAAGAACTGCAACAAAAAGATCAACCCCTATAGCTTACGCAGCTTTATCATGTATGACGGATGTTTCACTT CGAAACGCACTGATACCACTGCACTATGCTGAGAAAGATGCTAATGGAGAGATCACTGTTTCCTTTAAATATGTCGATGG CTCGGAAGGCGAATTTACTGTTACAGCCAAACACCTACCTTTTCTTCAATTAGTTGAATGTCATGCAGCAACTAGAAACC CGTTACCAAAGGAACGTAGTCTTGGTGGTATAGGTAGACACTCTAATGCAACCAAACCTCCTTTCTTACTGCCTTTAGGT ACAAAGTCAATGACTTATCAGTGGCAGGAAGGTGAGGTTCCTATTAGCGCGAGCATGTTAAGTTATTGCGGTATTGGTTA TGGTGATTACTTTCTAAACATTAACTCTCGACGAATTCGTGTTACTCACTCTGATTTAGAATACAAACCAGAAGAGCGTG GAATGACCGCCCAAAAGATTTTGCAGCACAGCATTGACACGGCTGATAAAAAATACCGTAACGGGCACCCTGTGCAAAAC AATAAGCAAGTCTCGCAAGGACTAATGGCGCTATCTCGCATAGCAGAAGGCGAGACACGCAATGAAGCCATAGAATCGGT CAAGGCAGAGCTAAAAATTCCCGTATTAGAGTACGAGGTTTGGAAAAAACGCAATCAACCAACGAACCCAAACGGCATTA GTTGTGACGGTAAAATTGATTTGAATTCAGAGAAAGATTGGCATTATGCAGCGCGTAAATTTGCAGAGGAAATGGGAATT ATTAAAGAGGGGGACGACATCACCTGCTATCAATACGATCTTTGCCCTTTTTGTAAAAGCGCCAAACTCGTTGATGACCC TTACGCAATTTATAAATTACTGAGCTTTCTCGATGTGTTTAGTGAGGCTATTGATCGATACCCAGAACGCGCTTCGGTTA TCCAGTCAAAGATAGAACGCTTTCAAGAACATCTTGATGACCTTCCTTTTGAAACTATCGAGAAAGCTGAAGATTTACTT GAAGAAAAAGGACGTTATCCGCTTTTTCACTCGTTATCTTCCGTTACTCAGTTTCTATAA
Upstream 100 bases:
>100_bases ACTACCCAAAAATATATTAGCTACATGAATGACGATAAAACCTGGTCGGAATTCGCTCAGCGTAAAAATCAATTCGCACA ACAAACGTTGAGATGATCAC
Downstream 100 bases:
>100_bases GGAGCATACCTATGTTGACTTTTGAAAACCCACAAAATCTAGACTTAACATTAGGTGCTATGCGCTCCATTGGCGATCAA GAAGATTATTTGCAGCAGGT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 819; Mature: 818
Protein sequence:
>819_residues MAKSRLSVSRNQHKPITQLKTKDNVTSLDLSFELHQRGMAYSIKYNLLDWCHEQCDPQKPLVQPSRLNRMQKLRAWVNQE RKNQSSEAYIRVKLASLKQYISFCDFNMLDPFSQGGYLSYVGNSGQLWRLVNAANEPKRYHFQYHDGEEAGLLEDTAFIQ KTLLDTLLTVLDFDVSEWQATLKPFSIKNSESSTQPYTSSEWYALVKRTQLFFFSLATQLIAFKEENPEAPPPQCLEGIV VDRNNGRDITITLRGKDGSVSPFNQCMAAAYTLFAYYTAFNDTVIKDVRHPIKVITSKVEGRTSKTAQVRAYKSRASKDV KALFAGSDENLHPEAIEKEAGFIVAEINKRDAVGKIDGITFIQTLELLSKSYSNDPFDTLIYFLDKEGEKDKVNVSHALL KLSQNLNLLSSRRGELTEHLIKTYTDIVENQNMPIFNWTQREDGARTMNKQVIYLNKRTATKRSTPIAYAALSCMTDVSL RNALIPLHYAEKDANGEITVSFKYVDGSEGEFTVTAKHLPFLQLVECHAATRNPLPKERSLGGIGRHSNATKPPFLLPLG TKSMTYQWQEGEVPISASMLSYCGIGYGDYFLNINSRRIRVTHSDLEYKPEERGMTAQKILQHSIDTADKKYRNGHPVQN NKQVSQGLMALSRIAEGETRNEAIESVKAELKIPVLEYEVWKKRNQPTNPNGISCDGKIDLNSEKDWHYAARKFAEEMGI IKEGDDITCYQYDLCPFCKSAKLVDDPYAIYKLLSFLDVFSEAIDRYPERASVIQSKIERFQEHLDDLPFETIEKAEDLL EEKGRYPLFHSLSSVTQFL
Sequences:
>Translated_819_residues MAKSRLSVSRNQHKPITQLKTKDNVTSLDLSFELHQRGMAYSIKYNLLDWCHEQCDPQKPLVQPSRLNRMQKLRAWVNQE RKNQSSEAYIRVKLASLKQYISFCDFNMLDPFSQGGYLSYVGNSGQLWRLVNAANEPKRYHFQYHDGEEAGLLEDTAFIQ KTLLDTLLTVLDFDVSEWQATLKPFSIKNSESSTQPYTSSEWYALVKRTQLFFFSLATQLIAFKEENPEAPPPQCLEGIV VDRNNGRDITITLRGKDGSVSPFNQCMAAAYTLFAYYTAFNDTVIKDVRHPIKVITSKVEGRTSKTAQVRAYKSRASKDV KALFAGSDENLHPEAIEKEAGFIVAEINKRDAVGKIDGITFIQTLELLSKSYSNDPFDTLIYFLDKEGEKDKVNVSHALL KLSQNLNLLSSRRGELTEHLIKTYTDIVENQNMPIFNWTQREDGARTMNKQVIYLNKRTATKRSTPIAYAALSCMTDVSL RNALIPLHYAEKDANGEITVSFKYVDGSEGEFTVTAKHLPFLQLVECHAATRNPLPKERSLGGIGRHSNATKPPFLLPLG TKSMTYQWQEGEVPISASMLSYCGIGYGDYFLNINSRRIRVTHSDLEYKPEERGMTAQKILQHSIDTADKKYRNGHPVQN NKQVSQGLMALSRIAEGETRNEAIESVKAELKIPVLEYEVWKKRNQPTNPNGISCDGKIDLNSEKDWHYAARKFAEEMGI IKEGDDITCYQYDLCPFCKSAKLVDDPYAIYKLLSFLDVFSEAIDRYPERASVIQSKIERFQEHLDDLPFETIEKAEDLL EEKGRYPLFHSLSSVTQFL >Mature_818_residues AKSRLSVSRNQHKPITQLKTKDNVTSLDLSFELHQRGMAYSIKYNLLDWCHEQCDPQKPLVQPSRLNRMQKLRAWVNQER KNQSSEAYIRVKLASLKQYISFCDFNMLDPFSQGGYLSYVGNSGQLWRLVNAANEPKRYHFQYHDGEEAGLLEDTAFIQK TLLDTLLTVLDFDVSEWQATLKPFSIKNSESSTQPYTSSEWYALVKRTQLFFFSLATQLIAFKEENPEAPPPQCLEGIVV DRNNGRDITITLRGKDGSVSPFNQCMAAAYTLFAYYTAFNDTVIKDVRHPIKVITSKVEGRTSKTAQVRAYKSRASKDVK ALFAGSDENLHPEAIEKEAGFIVAEINKRDAVGKIDGITFIQTLELLSKSYSNDPFDTLIYFLDKEGEKDKVNVSHALLK LSQNLNLLSSRRGELTEHLIKTYTDIVENQNMPIFNWTQREDGARTMNKQVIYLNKRTATKRSTPIAYAALSCMTDVSLR NALIPLHYAEKDANGEITVSFKYVDGSEGEFTVTAKHLPFLQLVECHAATRNPLPKERSLGGIGRHSNATKPPFLLPLGT KSMTYQWQEGEVPISASMLSYCGIGYGDYFLNINSRRIRVTHSDLEYKPEERGMTAQKILQHSIDTADKKYRNGHPVQNN KQVSQGLMALSRIAEGETRNEAIESVKAELKIPVLEYEVWKKRNQPTNPNGISCDGKIDLNSEKDWHYAARKFAEEMGII KEGDDITCYQYDLCPFCKSAKLVDDPYAIYKLLSFLDVFSEAIDRYPERASVIQSKIERFQEHLDDLPFETIEKAEDLLE EKGRYPLFHSLSSVTQFL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 93300; Mature: 93169
Theoretical pI: Translated: 7.27; Mature: 7.27
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAKSRLSVSRNQHKPITQLKTKDNVTSLDLSFELHQRGMAYSIKYNLLDWCHEQCDPQKP CCCCCCCCCCCCCCCHHHHCCCCCCEEEEEEHHHHHCCCEEEEEHHHHHHHHHHCCCCCC LVQPSRLNRMQKLRAWVNQERKNQSSEAYIRVKLASLKQYISFCDFNMLDPFSQGGYLSY CCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEHHHHHHHHHHHCCCCCCCCCCCCEEEE VGNSGQLWRLVNAANEPKRYHFQYHDGEEAGLLEDTAFIQKTLLDTLLTVLDFDVSEWQA ECCCCCEEEEECCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHH TLKPFSIKNSESSTQPYTSSEWYALVKRTQLFFFSLATQLIAFKEENPEAPPPQCLEGIV HHCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCEE VDRNNGRDITITLRGKDGSVSPFNQCMAAAYTLFAYYTAFNDTVIKDVRHPIKVITSKVE EECCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHC GRTSKTAQVRAYKSRASKDVKALFAGSDENLHPEAIEKEAGFIVAEINKRDAVGKIDGIT CCCCCHHHHHHHHHHHCHHHHHEEECCCCCCCHHHHHHCCCEEEEECCCCCCCCCCCCHH FIQTLELLSKSYSNDPFDTLIYFLDKEGEKDKVNVSHALLKLSQNLNLLSSRRGELTEHL HHHHHHHHHHHCCCCCHHHHHEEECCCCCCCHHHHHHHHHHHHHCCHHHHHCCHHHHHHH IKTYTDIVENQNMPIFNWTQREDGARTMNKQVIYLNKRTATKRSTPIAYAALSCMTDVSL HHHHHHHHHCCCCCEEECCCCCCCHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHH RNALIPLHYAEKDANGEITVSFKYVDGSEGEFTVTAKHLPFLQLVECHAATRNPLPKERS HHCEEEEEECCCCCCCEEEEEEEEECCCCCCEEEEECCCCHHHHHHHHHHHCCCCCCCCC LGGIGRHSNATKPPFLLPLGTKSMTYQWQEGEVPISASMLSYCGIGYGDYFLNINSRRIR CCCCCCCCCCCCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCEEEEECCCEEE VTHSDLEYKPEERGMTAQKILQHSIDTADKKYRNGHPVQNNKQVSQGLMALSRIAEGETR EEECCCCCCCHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCHH NEAIESVKAELKIPVLEYEVWKKRNQPTNPNGISCDGKIDLNSEKDWHYAARKFAEEMGI HHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCCEEECCCCCCHHHHHHHHHHHCCC IKEGDDITCYQYDLCPFCKSAKLVDDPYAIYKLLSFLDVFSEAIDRYPERASVIQSKIER EECCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH FQEHLDDLPFETIEKAEDLLEEKGRYPLFHSLSSVTQFL HHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHCC >Mature Secondary Structure AKSRLSVSRNQHKPITQLKTKDNVTSLDLSFELHQRGMAYSIKYNLLDWCHEQCDPQKP CCCCCCCCCCCCCCHHHHCCCCCCEEEEEEHHHHHCCCEEEEEHHHHHHHHHHCCCCCC LVQPSRLNRMQKLRAWVNQERKNQSSEAYIRVKLASLKQYISFCDFNMLDPFSQGGYLSY CCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEHHHHHHHHHHHCCCCCCCCCCCCEEEE VGNSGQLWRLVNAANEPKRYHFQYHDGEEAGLLEDTAFIQKTLLDTLLTVLDFDVSEWQA ECCCCCEEEEECCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHH TLKPFSIKNSESSTQPYTSSEWYALVKRTQLFFFSLATQLIAFKEENPEAPPPQCLEGIV HHCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCEE VDRNNGRDITITLRGKDGSVSPFNQCMAAAYTLFAYYTAFNDTVIKDVRHPIKVITSKVE EECCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHC GRTSKTAQVRAYKSRASKDVKALFAGSDENLHPEAIEKEAGFIVAEINKRDAVGKIDGIT CCCCCHHHHHHHHHHHCHHHHHEEECCCCCCCHHHHHHCCCEEEEECCCCCCCCCCCCHH FIQTLELLSKSYSNDPFDTLIYFLDKEGEKDKVNVSHALLKLSQNLNLLSSRRGELTEHL HHHHHHHHHHHCCCCCHHHHHEEECCCCCCCHHHHHHHHHHHHHCCHHHHHCCHHHHHHH IKTYTDIVENQNMPIFNWTQREDGARTMNKQVIYLNKRTATKRSTPIAYAALSCMTDVSL HHHHHHHHHCCCCCEEECCCCCCCHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHH RNALIPLHYAEKDANGEITVSFKYVDGSEGEFTVTAKHLPFLQLVECHAATRNPLPKERS HHCEEEEEECCCCCCCEEEEEEEEECCCCCCEEEEECCCCHHHHHHHHHHHCCCCCCCCC LGGIGRHSNATKPPFLLPLGTKSMTYQWQEGEVPISASMLSYCGIGYGDYFLNINSRRIR CCCCCCCCCCCCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCEEEEECCCEEE VTHSDLEYKPEERGMTAQKILQHSIDTADKKYRNGHPVQNNKQVSQGLMALSRIAEGETR EEECCCCCCCHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCHH NEAIESVKAELKIPVLEYEVWKKRNQPTNPNGISCDGKIDLNSEKDWHYAARKFAEEMGI HHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCCEEECCCCCCHHHHHHHHHHHCCC IKEGDDITCYQYDLCPFCKSAKLVDDPYAIYKLLSFLDVFSEAIDRYPERASVIQSKIER EECCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH FQEHLDDLPFETIEKAEDLLEEKGRYPLFHSLSSVTQFL HHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA