| Definition | Vibrio cholerae O395 chromosome 2, complete sequence. |
|---|---|
| Accession | NC_009457 |
| Length | 3,024,069 |
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The map label for this gene is damX [C]
Identifier: 147675481
GI number: 147675481
Start: 2351692
End: 2353167
Strand: Reverse
Name: damX [C]
Synonym: VC0395_A2204
Alternate gene names: 147675481
Gene position: 2353167-2351692 (Counterclockwise)
Preceding gene: 147673423
Following gene: 147675035
Centisome position: 77.81
GC content: 48.44
Gene sequence:
>1476_bases ATGAGCTTGGCACATGAACTGGATTTAGAATCGCAAACTGAGTTACTGGAACGGCTGCAACTGCTGACCCGTTTTGGTTC TAACTTGGTGAATGTTTGTGGTCGCCAAGGGGCGGGGAAATCGTGGCTCGCGCAACGATTTTTAGACAGTTGGGCGCAAG ATAAAAACCAATCTTTGCTCATGTGCCATCCTAACCAAAGTGACGAGCAGCGTCGCGTGACGATGTTGTCACAGCTGTTT TCTGAGCCACTTTACAATTCCAAAGACGCCTTAGCGGAAAGCTTCGCGCGTCTATTTGAAGATCAAAATTGCGATATCGT GATTGTGGTCGATGATGCCCATTTACTCTCTGAGTCTTTGGTTTCCGAATTGTGGATGTTGGTACTCGAAGCACAAACCA ATCCACGCTGGAACGTCAATGTGGTGCTGTTTGCTCAAGACAATGGTCTGGATGCGTTATTAACGCGTTTAAGTTATGGG CAAGAACATAAGCCTGTCGATTTAGAAATTGAGATGCTCTCCGAAGATGAAGCAGATCGTTTATTCGAAAATCGCGTCAT GCGCTATGTTGATCCACAAGTTGAGCGTAAAGTGCGTAATGCTTATAAGAAGATCAATCCGTTACCGGGGGAAATTATGG CGTTGGCGGAAACGAAAAATGAAAAACGGGTGGTGATCCGCTCGATTGTTGGCTCTCCGTTTAATATTGCCTTGGTCGTA TTACTTCTCTTGTTGTTGCTGGGCGGAGGTTATTGGTGGCTGCTGTCTAAGCCTGTTCCACAAGAGGGTAGCCTGCTTGA AGGCGAGGTCGCAGAACAAACCGCGATTCCAACCCTCAACTCCGAAGCAAACCCTCTAGCTCAAGACGGTACCTCAAGCG CAAATGGCGATGGCATTTCTGATGCTGAAGGCGATAACTTTGGTGCCGACGATGATACCTCTGCTTTGCCACCGGATGTG GTGGATACCACAGCCAGTGTCGGCATTGCCGATGACGGTAAGCGCGTCGTGATCAACTCTGATGTGGTGGATGCCCTGCT GCAAGGCAAAGCAGACACCGCTGATACTTCGGCGATCAACAACTTAGTAGAGTCAACTCAAGCGGCGACGGAGCTGAAAA CGCAAACGTTAGAGCAAACACAAGTGCAGAATGCTCAGCCTAAATCGGTGAGTTTCTCTTTTGCGCGTGATGAGCTGAAA GCCATGTCACCACGCAGCTACACATTGCAGTTGGCGGCGATGAATTCTCTGCAAGATGTGCAAGGCTTTATCGACGAGCA CAAGCTACAAGGGAAAGTCTACGTTTACCCAACACTGCGTAACGATGTCGAGTGGTTTATTGTCACTATGGGCAACTATC CCACCATCCAAATGGCGCGTGATGCCTCAGAAAAACTCTCTGCTTCGCTACAAGCGTTAGGTCCTTGGGCTAAATCACTT AGCCAAGTTCAGCGAGAAATCGAGCGTAAGAAATAA
Upstream 100 bases:
>100_bases TGAAGCCGTGATTGCCCAAGCGATAGAGTATTGTCGCACGGTGTAATCGAGAGACTTGCAGAACATTTTGATATCAGACA ATTGTCATTAGGATGGCCCA
Downstream 100 bases:
>100_bases ACCTGAGCTTCGCTGAAAAATATGTTACATTCCGCAGCCTTATTTTGTGGCCAACGATTAGAGCAGTAGATGAAAAAGCA GCGCGCCTTTCTGAAATGGG
Product: hypothetical protein
Products: NA
Alternate protein names: Sporulation And Repeat Protein; DamX-Related Protein
Number of amino acids: Translated: 491; Mature: 490
Protein sequence:
>491_residues MSLAHELDLESQTELLERLQLLTRFGSNLVNVCGRQGAGKSWLAQRFLDSWAQDKNQSLLMCHPNQSDEQRRVTMLSQLF SEPLYNSKDALAESFARLFEDQNCDIVIVVDDAHLLSESLVSELWMLVLEAQTNPRWNVNVVLFAQDNGLDALLTRLSYG QEHKPVDLEIEMLSEDEADRLFENRVMRYVDPQVERKVRNAYKKINPLPGEIMALAETKNEKRVVIRSIVGSPFNIALVV LLLLLLLGGGYWWLLSKPVPQEGSLLEGEVAEQTAIPTLNSEANPLAQDGTSSANGDGISDAEGDNFGADDDTSALPPDV VDTTASVGIADDGKRVVINSDVVDALLQGKADTADTSAINNLVESTQAATELKTQTLEQTQVQNAQPKSVSFSFARDELK AMSPRSYTLQLAAMNSLQDVQGFIDEHKLQGKVYVYPTLRNDVEWFIVTMGNYPTIQMARDASEKLSASLQALGPWAKSL SQVQREIERKK
Sequences:
>Translated_491_residues MSLAHELDLESQTELLERLQLLTRFGSNLVNVCGRQGAGKSWLAQRFLDSWAQDKNQSLLMCHPNQSDEQRRVTMLSQLF SEPLYNSKDALAESFARLFEDQNCDIVIVVDDAHLLSESLVSELWMLVLEAQTNPRWNVNVVLFAQDNGLDALLTRLSYG QEHKPVDLEIEMLSEDEADRLFENRVMRYVDPQVERKVRNAYKKINPLPGEIMALAETKNEKRVVIRSIVGSPFNIALVV LLLLLLLGGGYWWLLSKPVPQEGSLLEGEVAEQTAIPTLNSEANPLAQDGTSSANGDGISDAEGDNFGADDDTSALPPDV VDTTASVGIADDGKRVVINSDVVDALLQGKADTADTSAINNLVESTQAATELKTQTLEQTQVQNAQPKSVSFSFARDELK AMSPRSYTLQLAAMNSLQDVQGFIDEHKLQGKVYVYPTLRNDVEWFIVTMGNYPTIQMARDASEKLSASLQALGPWAKSL SQVQREIERKK >Mature_490_residues SLAHELDLESQTELLERLQLLTRFGSNLVNVCGRQGAGKSWLAQRFLDSWAQDKNQSLLMCHPNQSDEQRRVTMLSQLFS EPLYNSKDALAESFARLFEDQNCDIVIVVDDAHLLSESLVSELWMLVLEAQTNPRWNVNVVLFAQDNGLDALLTRLSYGQ EHKPVDLEIEMLSEDEADRLFENRVMRYVDPQVERKVRNAYKKINPLPGEIMALAETKNEKRVVIRSIVGSPFNIALVVL LLLLLLGGGYWWLLSKPVPQEGSLLEGEVAEQTAIPTLNSEANPLAQDGTSSANGDGISDAEGDNFGADDDTSALPPDVV DTTASVGIADDGKRVVINSDVVDALLQGKADTADTSAINNLVESTQAATELKTQTLEQTQVQNAQPKSVSFSFARDELKA MSPRSYTLQLAAMNSLQDVQGFIDEHKLQGKVYVYPTLRNDVEWFIVTMGNYPTIQMARDASEKLSASLQALGPWAKSLS QVQREIERKK
Specific function: Directly Or Indirectly Interferes With Cell Division. [C]
COG id: COG3267
COG function: function code U; Type II secretory pathway, component ExeA (predicted ATPase)
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 54453; Mature: 54322
Theoretical pI: Translated: 4.36; Mature: 4.36
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSLAHELDLESQTELLERLQLLTRFGSNLVNVCGRQGAGKSWLAQRFLDSWAQDKNQSLL CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCEEE MCHPNQSDEQRRVTMLSQLFSEPLYNSKDALAESFARLFEDQNCDIVIVVDDAHLLSESL EECCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHH VSELWMLVLEAQTNPRWNVNVVLFAQDNGLDALLTRLSYGQEHKPVDLEIEMLSEDEADR HHHHHHHHHHCCCCCCEEEEEEEEECCCCHHHHHHHHHCCCCCCCCCEEEEECCCCHHHH LFENRVMRYVDPQVERKVRNAYKKINPLPGEIMALAETKNEKRVVIRSIVGSPFNIALVV HHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHEEEECCCCCHHHHHHHHHCCCHHHHHHH LLLLLLLGGGYWWLLSKPVPQEGSLLEGEVAEQTAIPTLNSEANPLAQDGTSSANGDGIS HHHHHHHCCCEEEEECCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC DAEGDNFGADDDTSALPPDVVDTTASVGIADDGKRVVINSDVVDALLQGKADTADTSAIN CCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCEEEEEHHHHHHHHCCCCCCCHHHHHH NLVESTQAATELKTQTLEQTQVQNAQPKSVSFSFARDELKAMSPRSYTLQLAAMNSLQDV HHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEHHHHHHHHHHCCCCCEEEEEHHHHHHHHH QGFIDEHKLQGKVYVYPTLRNDVEWFIVTMGNYPTIQMARDASEKLSASLQALGPWAKSL HHHHHHHHCCCEEEEEEECCCCCEEEEEECCCCCEEEEHHHHHHHHHHHHHHHCHHHHHH SQVQREIERKK HHHHHHHHHCC >Mature Secondary Structure SLAHELDLESQTELLERLQLLTRFGSNLVNVCGRQGAGKSWLAQRFLDSWAQDKNQSLL CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCEEE MCHPNQSDEQRRVTMLSQLFSEPLYNSKDALAESFARLFEDQNCDIVIVVDDAHLLSESL EECCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHH VSELWMLVLEAQTNPRWNVNVVLFAQDNGLDALLTRLSYGQEHKPVDLEIEMLSEDEADR HHHHHHHHHHCCCCCCEEEEEEEEECCCCHHHHHHHHHCCCCCCCCCEEEEECCCCHHHH LFENRVMRYVDPQVERKVRNAYKKINPLPGEIMALAETKNEKRVVIRSIVGSPFNIALVV HHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHEEEECCCCCHHHHHHHHHCCCHHHHHHH LLLLLLLGGGYWWLLSKPVPQEGSLLEGEVAEQTAIPTLNSEANPLAQDGTSSANGDGIS HHHHHHHCCCEEEEECCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC DAEGDNFGADDDTSALPPDVVDTTASVGIADDGKRVVINSDVVDALLQGKADTADTSAIN CCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCEEEEEHHHHHHHHCCCCCCCHHHHHH NLVESTQAATELKTQTLEQTQVQNAQPKSVSFSFARDELKAMSPRSYTLQLAAMNSLQDV HHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEHHHHHHHHHHCCCCCEEEEEHHHHHHHHH QGFIDEHKLQGKVYVYPTLRNDVEWFIVTMGNYPTIQMARDASEKLSASLQALGPWAKSL HHHHHHHHCCCEEEEEEECCCCCEEEEEECCCCCEEEEHHHHHHHHHHHHHHHCHHHHHH SQVQREIERKK HHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA