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The map label for this gene is ccmH [H]

Identifier: 147675051

GI number: 147675051

Start: 1760580

End: 1761056

Strand: Reverse

Name: ccmH [H]

Synonym: VC0395_A1638

Alternate gene names: 147675051

Gene position: 1761056-1760580 (Counterclockwise)

Preceding gene: 147675010

Following gene: 147675723

Centisome position: 58.23

GC content: 46.33

Gene sequence:

>477_bases
ATGAAAAAGTGGTTGTTTGCGGTCTGTGCCGCCATGCTGATTTCTCTCTCGGCGTTTGCAACGATTGAAGTGTATGACTT
TGATACTCCAGAGCAGGAGAAACAATTTCAAGAATTGGGGGCGACCTTGCGCTGCCCGAAATGTCAAAACAACACGATTG
CCGACTCAAACGCTGAGTTGGCACAAGATCTGCGCCAAAAAGTGTATGAGATGACCAAAGAGGGTAAATCGAAATCGGAA
ATCGTCGACTACATGATTGCGCGTTATGGCAACTTTGTGACCTACAATCCGCCATTTACCTTAGGTACCGCTGTTCTTTG
GCTTGGGCCTATTTCAGTGTTAGTGATTGGTTTCACTGTGATTGTGTTACGCAGTCGTCGTAAAGCGCGTGATGCTGCGA
ATAATGCCGAGTGGAATGAAGAGCAAGAAGCCCGTTTGAAAGCATTGCTAAAAGAAGAGCAAGAGGGAGAGAAGTAA

Upstream 100 bases:

>100_bases
ATGGCGTGATTCGCTATCGTCATGTTGGGGATGTTAATTCGCGCAACTGGCAAGAAACACTCGCGCCACTGTATGAAAAA
ATGCTGGCGGAGGCGAAACA

Downstream 100 bases:

>100_bases
TCATGTGGATGTTTTGGATCTCGACCCTATTACTGGTGGCGATTGCGGTGGTTTTCGTCATCATTCCGTTTATTCAAAAG
CGTGCGAATAACGATCAGGC

Product: cytochrome c-type biogenesis protein CcmH

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 158; Mature: 158

Protein sequence:

>158_residues
MKKWLFAVCAAMLISLSAFATIEVYDFDTPEQEKQFQELGATLRCPKCQNNTIADSNAELAQDLRQKVYEMTKEGKSKSE
IVDYMIARYGNFVTYNPPFTLGTAVLWLGPISVLVIGFTVIVLRSRRKARDAANNAEWNEEQEARLKALLKEEQEGEK

Sequences:

>Translated_158_residues
MKKWLFAVCAAMLISLSAFATIEVYDFDTPEQEKQFQELGATLRCPKCQNNTIADSNAELAQDLRQKVYEMTKEGKSKSE
IVDYMIARYGNFVTYNPPFTLGTAVLWLGPISVLVIGFTVIVLRSRRKARDAANNAEWNEEQEARLKALLKEEQEGEK
>Mature_158_residues
MKKWLFAVCAAMLISLSAFATIEVYDFDTPEQEKQFQELGATLRCPKCQNNTIADSNAELAQDLRQKVYEMTKEGKSKSE
IVDYMIARYGNFVTYNPPFTLGTAVLWLGPISVLVIGFTVIVLRSRRKARDAANNAEWNEEQEARLKALLKEEQEGEK

Specific function: May be required for the biogenesis of c-type cytochromes. Possible subunit of a heme lyase [H]

COG id: COG3088

COG function: function code O; Uncharacterized protein involved in biosynthesis of c-type cytochromes

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 TPR repeats [H]

Homologues:

Organism=Escherichia coli, GI1788522, Length=119, Percent_Identity=58.8235294117647, Blast_Score=146, Evalue=6e-37,
Organism=Escherichia coli, GI1790512, Length=88, Percent_Identity=44.3181818181818, Blast_Score=82, Evalue=1e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005616
- InterPro:   IPR013026
- InterPro:   IPR011990
- InterPro:   IPR019734 [H]

Pfam domain/function: PF03918 CcmH [H]

EC number: NA

Molecular weight: Translated: 17946; Mature: 17946

Theoretical pI: Translated: 5.06; Mature: 5.06

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKWLFAVCAAMLISLSAFATIEVYDFDTPEQEKQFQELGATLRCPKCQNNTIADSNAEL
CHHHHHHHHHHHHHHHHHHHEEEEEECCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCHHH
AQDLRQKVYEMTKEGKSKSEIVDYMIARYGNFVTYNPPFTLGTAVLWLGPISVLVIGFTV
HHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCEEECCCHHHHHHHHHHHHHHHHHHHHHH
IVLRSRRKARDAANNAEWNEEQEARLKALLKEEQEGEK
HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MKKWLFAVCAAMLISLSAFATIEVYDFDTPEQEKQFQELGATLRCPKCQNNTIADSNAEL
CHHHHHHHHHHHHHHHHHHHEEEEEECCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCHHH
AQDLRQKVYEMTKEGKSKSEIVDYMIARYGNFVTYNPPFTLGTAVLWLGPISVLVIGFTV
HHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCEEECCCHHHHHHHHHHHHHHHHHHHHHH
IVLRSRRKARDAANNAEWNEEQEARLKALLKEEQEGEK
HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9278503; 7635817 [H]