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The map label for this gene is ccmH [H]

Identifier: 147675723

GI number: 147675723

Start: 1759363

End: 1760577

Strand: Reverse

Name: ccmH [H]

Synonym: VC0395_A1637

Alternate gene names: 147675723

Gene position: 1760577-1759363 (Counterclockwise)

Preceding gene: 147675051

Following gene: 147674073

Centisome position: 58.22

GC content: 47.16

Gene sequence:

>1215_bases
ATGTGGATGTTTTGGATCTCGACCCTATTACTGGTGGCGATTGCGGTGGTTTTCGTCATCATTCCGTTTATTCAAAAGCG
TGCGAATAACGATCAGGCTTTGCGCGATGAGCTGAATAAAGCGTTTTACAAAGACCGCTTGAAAGAGCTTGAAGAGGAAA
CCGAAGAAGGCATTGTTGCCGATCAACAAGATTTGATTGCCGACTTAAAACAGACTCTGCTTGACGACATTCCAACCCAG
CAAAAACATCAGCAGGAAAATCGTGTTTCACTGTGGATGGTTGCCCTGCCTTCAGTATTGTTGGTAGTCGGATTGAGTTA
TGCGCTGTACGCCAAGTTTGGTCACTATCAGCATGTTCAGGCTTGGCAGCAAGTGTCAGCACAACTGCCTGAATTGTCAA
AAAAACTCATGTCGCCACAAGCGGAACTCAGTGACGAAGAGATGAATGATTTGACGTTGGCACTGCGCACTCGACTGCAT
TATCAGCCTGATGATGTTACCGGTTGGTTGTTGCTGGGTCGGATTGGCCTTGCTAATCGCGATCTGGAAACCGCGATTGG
CGCGATGAAGAAAGCTTTTGCTCTGGATAATGAAGATCCGGATGTGAAATTTGGTTACGCACAAGCTTTGATGCTTTCGA
ATGATCCTGTCGACCAGCAAGAAGCGAAGTCGATTCTGCTCAAGTTAGCCCAACGTGGTTATGCTGATTTACGCGTCTAT
TCATTATTGGCGTTTGATGCTTTTGAAAGTGGAGATTTTCCTGCTGCAATCAAGTACTGGAGTTTGATGCAACAAGCGAT
TGGTCCTGACGATGCTCGTTATGAGATGCTCAGCCGCAGTATTGAAAGCGCTCGTAAGAGAATGGGCGAGGGCATGGCAG
AGGGTCAATCGGTGAAAGTCACCATTAATCTAGGCGAGCAGGTTAAGGTTGATCCTAACGCAGTGTTGATCGTATCTATC
CATGCTCCCGGTTCGCCAATGCCTGTTGCTGCAGCCCGTTATCCGCTAGGTGAGTTTCCAAGAACCGTGGTGTTGGATGA
CAATAACAGCATGATGGAAGGATCAAAATTGTCCAGTCTTGAGTCGTATGTGGTACGTGTGCGTATCGACAGCGATGGTA
ATGTGGCGACGAAAAGCGGTGACTGGTATGCCGAAAGTCCCACAATGAAAACAGGTGAGCCTGTTGACGTTGTGCTTGAT
AAGCAGTATGAATAA

Upstream 100 bases:

>100_bases
GTAAAGCGCGTGATGCTGCGAATAATGCCGAGTGGAATGAAGAGCAAGAAGCCCGTTTGAAAGCATTGCTAAAAGAAGAG
CAAGAGGGAGAGAAGTAATC

Downstream 100 bases:

>100_bases
AATCACAAGCTGAAAAATAATATAACAATAAGGCCGATGGGATCATCGGCCTTTGCACATGGAATTACGTATGGTTGGCC
GCTTATCTTGGATTACGCTA

Product: cytochrome c-type biogenesis protein CcmH

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 404; Mature: 404

Protein sequence:

>404_residues
MWMFWISTLLLVAIAVVFVIIPFIQKRANNDQALRDELNKAFYKDRLKELEEETEEGIVADQQDLIADLKQTLLDDIPTQ
QKHQQENRVSLWMVALPSVLLVVGLSYALYAKFGHYQHVQAWQQVSAQLPELSKKLMSPQAELSDEEMNDLTLALRTRLH
YQPDDVTGWLLLGRIGLANRDLETAIGAMKKAFALDNEDPDVKFGYAQALMLSNDPVDQQEAKSILLKLAQRGYADLRVY
SLLAFDAFESGDFPAAIKYWSLMQQAIGPDDARYEMLSRSIESARKRMGEGMAEGQSVKVTINLGEQVKVDPNAVLIVSI
HAPGSPMPVAAARYPLGEFPRTVVLDDNNSMMEGSKLSSLESYVVRVRIDSDGNVATKSGDWYAESPTMKTGEPVDVVLD
KQYE

Sequences:

>Translated_404_residues
MWMFWISTLLLVAIAVVFVIIPFIQKRANNDQALRDELNKAFYKDRLKELEEETEEGIVADQQDLIADLKQTLLDDIPTQ
QKHQQENRVSLWMVALPSVLLVVGLSYALYAKFGHYQHVQAWQQVSAQLPELSKKLMSPQAELSDEEMNDLTLALRTRLH
YQPDDVTGWLLLGRIGLANRDLETAIGAMKKAFALDNEDPDVKFGYAQALMLSNDPVDQQEAKSILLKLAQRGYADLRVY
SLLAFDAFESGDFPAAIKYWSLMQQAIGPDDARYEMLSRSIESARKRMGEGMAEGQSVKVTINLGEQVKVDPNAVLIVSI
HAPGSPMPVAAARYPLGEFPRTVVLDDNNSMMEGSKLSSLESYVVRVRIDSDGNVATKSGDWYAESPTMKTGEPVDVVLD
KQYE
>Mature_404_residues
MWMFWISTLLLVAIAVVFVIIPFIQKRANNDQALRDELNKAFYKDRLKELEEETEEGIVADQQDLIADLKQTLLDDIPTQ
QKHQQENRVSLWMVALPSVLLVVGLSYALYAKFGHYQHVQAWQQVSAQLPELSKKLMSPQAELSDEEMNDLTLALRTRLH
YQPDDVTGWLLLGRIGLANRDLETAIGAMKKAFALDNEDPDVKFGYAQALMLSNDPVDQQEAKSILLKLAQRGYADLRVY
SLLAFDAFESGDFPAAIKYWSLMQQAIGPDDARYEMLSRSIESARKRMGEGMAEGQSVKVTINLGEQVKVDPNAVLIVSI
HAPGSPMPVAAARYPLGEFPRTVVLDDNNSMMEGSKLSSLESYVVRVRIDSDGNVATKSGDWYAESPTMKTGEPVDVVLD
KQYE

Specific function: May be required for the biogenesis of c-type cytochromes. Possible subunit of a heme lyase [H]

COG id: COG4235

COG function: function code O; Cytochrome c biogenesis factor

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 TPR repeats [H]

Homologues:

Organism=Escherichia coli, GI1788522, Length=204, Percent_Identity=34.8039215686275, Blast_Score=142, Evalue=5e-35,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005616
- InterPro:   IPR013026
- InterPro:   IPR011990
- InterPro:   IPR019734 [H]

Pfam domain/function: PF03918 CcmH [H]

EC number: NA

Molecular weight: Translated: 45275; Mature: 45275

Theoretical pI: Translated: 4.54; Mature: 4.54

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MWMFWISTLLLVAIAVVFVIIPFIQKRANNDQALRDELNKAFYKDRLKELEEETEEGIVA
CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
DQQDLIADLKQTLLDDIPTQQKHQQENRVSLWMVALPSVLLVVGLSYALYAKFGHYQHVQ
CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
AWQQVSAQLPELSKKLMSPQAELSDEEMNDLTLALRTRLHYQPDDVTGWLLLGRIGLANR
HHHHHHHHHHHHHHHHCCCCHHCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCC
DLETAIGAMKKAFALDNEDPDVKFGYAQALMLSNDPVDQQEAKSILLKLAQRGYADLRVY
HHHHHHHHHHHHHHCCCCCCCCEEHHHHEEEECCCCCCHHHHHHHHHHHHHCCCHHHHHH
SLLAFDAFESGDFPAAIKYWSLMQQAIGPDDARYEMLSRSIESARKRMGEGMAEGQSVKV
HHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEE
TINLGEQVKVDPNAVLIVSIHAPGSPMPVAAARYPLGEFPRTVVLDDNNSMMEGSKLSSL
EEECCCEEEECCCEEEEEEEECCCCCCCCHHHCCCCCCCCCEEEEECCCCCCCCCHHHHH
ESYVVRVRIDSDGNVATKSGDWYAESPTMKTGEPVDVVLDKQYE
CEEEEEEEECCCCCEEECCCCCEECCCCCCCCCCCEEEECCCCC
>Mature Secondary Structure
MWMFWISTLLLVAIAVVFVIIPFIQKRANNDQALRDELNKAFYKDRLKELEEETEEGIVA
CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
DQQDLIADLKQTLLDDIPTQQKHQQENRVSLWMVALPSVLLVVGLSYALYAKFGHYQHVQ
CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
AWQQVSAQLPELSKKLMSPQAELSDEEMNDLTLALRTRLHYQPDDVTGWLLLGRIGLANR
HHHHHHHHHHHHHHHHCCCCHHCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCC
DLETAIGAMKKAFALDNEDPDVKFGYAQALMLSNDPVDQQEAKSILLKLAQRGYADLRVY
HHHHHHHHHHHHHHCCCCCCCCEEHHHHEEEECCCCCCHHHHHHHHHHHHHCCCHHHHHH
SLLAFDAFESGDFPAAIKYWSLMQQAIGPDDARYEMLSRSIESARKRMGEGMAEGQSVKV
HHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEE
TINLGEQVKVDPNAVLIVSIHAPGSPMPVAAARYPLGEFPRTVVLDDNNSMMEGSKLSSL
EEECCCEEEECCCEEEEEEEECCCCCCCCHHHCCCCCCCCCEEEEECCCCCCCCCHHHHH
ESYVVRVRIDSDGNVATKSGDWYAESPTMKTGEPVDVVLDKQYE
CEEEEEEEECCCCCEEECCCCCEECCCCCCCCCCCEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9278503; 7635817 [H]