| Definition | Bradyrhizobium sp. ORS278 chromosome, complete genome. |
|---|---|
| Accession | NC_009445 |
| Length | 7,456,587 |
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The map label for this gene is 146343035
Identifier: 146343035
GI number: 146343035
Start: 6463111
End: 6465633
Strand: Reverse
Name: 146343035
Synonym: BRADO6223
Alternate gene names: NA
Gene position: 6465633-6463111 (Counterclockwise)
Preceding gene: 146343036
Following gene: 146343031
Centisome position: 86.71
GC content: 69.32
Gene sequence:
>2523_bases ATGACCCAGGCCGCCCTCGCCATGTCCATGACCGACCCGATCGACACCACCGCCGATGCCGGGCTGATGGCCCGCATCGA CAGCGCCTGTCAACGCATCGCGCCGCTGTGGCCGCTGAAGCACTTCGTCGCCGTCAACCCGTTCCTCGGCTTCACAGGCC AGAGCTTCGCGGCGACGGCGGCCACCTTCGAACGCGTGGTGCGAACGCGGATGCTGATGCCGCGGGCGTTCTACCGGCAG GCGCTCGACGATGGGCGGATCGACGACGCCGCGCTGGCGCAGGCGCTCGGCGCTCATCCCTCGACCGGGCTCGAGCTCAA CGAGCTCAAGCAGAAGGCGCGGGCCGAGGCCGGGACGTCATCGCCGCCCGCCGTGGTGGCGACCGTCGCCGAGGTGCTCG ACCGGCTCGCCGAGGGCGATCGCTATGTCTCGCTGGTCGCCTTCATGATCGACGAGATCTCGGCATTCTGCGCCACCTAT TTCGACGAGGGCCAGGCGAGCTGGCCGAGCCCCGTGCGCAAGCTGAAGCCCTACGCCGCGTGGCGGACGATCGCGGCCTA TGATCGCAATCCCGAGGTGATGGGGCTGACGGGATTCCGCAAAGCCATCGCCGAGCTGCCCGCCGATCCGGTCCAGGCGA TCGGCGTGATCGTCGACCGTCTCGGCATCCCCGAGCGCGCCGTCGAGGACTATCTGGTGCGGGCACTGTTCGATCTCGGC GGCTGGTCGGCCTACGCGCGCTACATCGGCTGGAGCGCCGGGCTCGACGGCCAGCGGGATGATACGCTGCTGGAGCTGCT CGCGATCCGGCTGGCCTGGGGCTACGCGCTCTACCAGGCGCGCACCGACGATGCGTTCAAGGCGGCGTGGGCACAAGCGA TGGCGGAAGCCGCCAAGCTGCCGGCCGACCAGCGGCTCGAGGAGACGCCGGAGCTCGCGATCGACCTCGTTCTGCACGAG GCCTATGAGATCGCGCTCCGGAGCAAGCTCGTCGCCAGGCTCGCGGGACACGGCGCCCAGGCCGTGACGCGGCTGCCGGC GCGGCCGCCGGTGCAGGCGGCGTTCTGCATCGACGTCCGCTCGGAGATCTTCCGGCGTGCGCTGGAGACCGCCTATCCGG ACGCCGAGACGATCGGCTTCGCCGGATTCTTTGGCTTCCCGATCGAGTACGTCCCGATTGGCCACAGCAAGGGCGGCGCG CAATGCCCCGTGCTGCTCAAGCCGGCCTTCATCGTCTGCGAGGCGGTGAAAGACGCTGACGACGTCGAACAGTCGGAGGT GCTCGGCCTTCGGCTGCTGCGGCGGCGCGCGGCCAAGGCGTTAAAATCGTTCAAGGTCTCGGCCGTCTCGTCGTTCTCCT TCGTCGAGACCGCTGGCCTCGGCTTTGCCGCCAAGATCGCCACCGACAGCGCCGGGGTGACGCGGCCAGTGCCGTCACCG GTCGTCGACGGTCTGGATCCTGAGATCGCGGCGCGGGTCCAGCCACGGCTGACGCCTGGCGAACTCGCGGGGCGGGCGAC CGGCTTCACCGATCCGCAGCGCGTCGCGATGGCCGAGGCGGTGCTCAAGGCGATGTCGCTGACCGGGCCGTTCGCGCGGC TGGTGCTGCTCGCCGGTCACGGCAGCACCACGGTCAATAATCCGCACGCCTCCGGGCTCGATTGCGGCGCCTGCGGCGGC CACACCGGTGAAGCGAATGCACGGGTTGCGGCGGCCGTGCTCAATGATTGGCAGGTGCGCGAAGGCCTGCGCGCCAAGGG CATCGACATCCCCGCCGACTGCTGGTTCATCGGCGCGCTGCACGACACCACGACCGACGACGTGACCCTGTTCGACGAGG ACGACGTCCCCGCCACGCTTGCTCAGGATCTCGCGCGGCTGAAGGCGCGGCTGACAGAGGCGGCGCGGCTGGCGCGGCTC GAGCGCAGCGCGCTGCTCGGCATCAGCAACAAGGCCGCTGTGGATGAAGCCGTGATCGCCCGCAGCCGCGACTGGTCGCA GGTCCGGCCGGAATGGGGGCTCGCCGGCAACACCGCCTTCATCGCAGCACCGCGCAGCTTCACCCGCGGCCTCAATCTCG GCGGGCGCGCCTTCCTGCACTCCTACGAGGCCGCGCGGGACGACGGCCATCGCACGCTCGAGCTGATCATGACGGCGCCG ATGGTGGTCGCGAGCTGGATCAATCTGCAGTACTACGGCTCGACCGTGAACAACGCCGCCTTCGGCAGCGGCAACAAGGT GCTGCACAACATCGTGGGCCAGCTCGGCGTGCTCGAAGGCAATGCCGGGGATCTCAGGGTCGGGCTGCCCTGGCAGTCCG TGCATGACGGCAGCCGCTTGATCCACGAGCCGGTGCGCCTCAACGTCTTCATCGCGGCGCCGGAGGCTGCGATGGACGAA ATCATGCAGCGCCACCAGGGCGTGCGCGATCTCGTGGTCAATGGCTGGGTCATGCTGCATTCGCTGAGCGACCAGGGAAC GATACGCCGCTGCGTCCGTCCCGGCGAATGGAGGAGCGCATGA
Upstream 100 bases:
>100_bases AACGGCCTCTACCTCAACACGCTTGCCAACCGCCTCGTCCTGACCGTGTGGCCGCGCAATTCCGCGACGTCTTCCTCCAA CCCGTGATCCGAGACCTCAC
Downstream 100 bases:
>100_bases CGACGCCGGCGCGCCTCGCCGCCCGCGAGGCGCGCCGGATGATCGGCTCACAGCGTCTTCAGATACGCGATCAGGTCCCA GCGCTCCTCCTCGGAGAAGG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 840; Mature: 839
Protein sequence:
>840_residues MTQAALAMSMTDPIDTTADAGLMARIDSACQRIAPLWPLKHFVAVNPFLGFTGQSFAATAATFERVVRTRMLMPRAFYRQ ALDDGRIDDAALAQALGAHPSTGLELNELKQKARAEAGTSSPPAVVATVAEVLDRLAEGDRYVSLVAFMIDEISAFCATY FDEGQASWPSPVRKLKPYAAWRTIAAYDRNPEVMGLTGFRKAIAELPADPVQAIGVIVDRLGIPERAVEDYLVRALFDLG GWSAYARYIGWSAGLDGQRDDTLLELLAIRLAWGYALYQARTDDAFKAAWAQAMAEAAKLPADQRLEETPELAIDLVLHE AYEIALRSKLVARLAGHGAQAVTRLPARPPVQAAFCIDVRSEIFRRALETAYPDAETIGFAGFFGFPIEYVPIGHSKGGA QCPVLLKPAFIVCEAVKDADDVEQSEVLGLRLLRRRAAKALKSFKVSAVSSFSFVETAGLGFAAKIATDSAGVTRPVPSP VVDGLDPEIAARVQPRLTPGELAGRATGFTDPQRVAMAEAVLKAMSLTGPFARLVLLAGHGSTTVNNPHASGLDCGACGG HTGEANARVAAAVLNDWQVREGLRAKGIDIPADCWFIGALHDTTTDDVTLFDEDDVPATLAQDLARLKARLTEAARLARL ERSALLGISNKAAVDEAVIARSRDWSQVRPEWGLAGNTAFIAAPRSFTRGLNLGGRAFLHSYEAARDDGHRTLELIMTAP MVVASWINLQYYGSTVNNAAFGSGNKVLHNIVGQLGVLEGNAGDLRVGLPWQSVHDGSRLIHEPVRLNVFIAAPEAAMDE IMQRHQGVRDLVVNGWVMLHSLSDQGTIRRCVRPGEWRSA
Sequences:
>Translated_840_residues MTQAALAMSMTDPIDTTADAGLMARIDSACQRIAPLWPLKHFVAVNPFLGFTGQSFAATAATFERVVRTRMLMPRAFYRQ ALDDGRIDDAALAQALGAHPSTGLELNELKQKARAEAGTSSPPAVVATVAEVLDRLAEGDRYVSLVAFMIDEISAFCATY FDEGQASWPSPVRKLKPYAAWRTIAAYDRNPEVMGLTGFRKAIAELPADPVQAIGVIVDRLGIPERAVEDYLVRALFDLG GWSAYARYIGWSAGLDGQRDDTLLELLAIRLAWGYALYQARTDDAFKAAWAQAMAEAAKLPADQRLEETPELAIDLVLHE AYEIALRSKLVARLAGHGAQAVTRLPARPPVQAAFCIDVRSEIFRRALETAYPDAETIGFAGFFGFPIEYVPIGHSKGGA QCPVLLKPAFIVCEAVKDADDVEQSEVLGLRLLRRRAAKALKSFKVSAVSSFSFVETAGLGFAAKIATDSAGVTRPVPSP VVDGLDPEIAARVQPRLTPGELAGRATGFTDPQRVAMAEAVLKAMSLTGPFARLVLLAGHGSTTVNNPHASGLDCGACGG HTGEANARVAAAVLNDWQVREGLRAKGIDIPADCWFIGALHDTTTDDVTLFDEDDVPATLAQDLARLKARLTEAARLARL ERSALLGISNKAAVDEAVIARSRDWSQVRPEWGLAGNTAFIAAPRSFTRGLNLGGRAFLHSYEAARDDGHRTLELIMTAP MVVASWINLQYYGSTVNNAAFGSGNKVLHNIVGQLGVLEGNAGDLRVGLPWQSVHDGSRLIHEPVRLNVFIAAPEAAMDE IMQRHQGVRDLVVNGWVMLHSLSDQGTIRRCVRPGEWRSA >Mature_839_residues TQAALAMSMTDPIDTTADAGLMARIDSACQRIAPLWPLKHFVAVNPFLGFTGQSFAATAATFERVVRTRMLMPRAFYRQA LDDGRIDDAALAQALGAHPSTGLELNELKQKARAEAGTSSPPAVVATVAEVLDRLAEGDRYVSLVAFMIDEISAFCATYF DEGQASWPSPVRKLKPYAAWRTIAAYDRNPEVMGLTGFRKAIAELPADPVQAIGVIVDRLGIPERAVEDYLVRALFDLGG WSAYARYIGWSAGLDGQRDDTLLELLAIRLAWGYALYQARTDDAFKAAWAQAMAEAAKLPADQRLEETPELAIDLVLHEA YEIALRSKLVARLAGHGAQAVTRLPARPPVQAAFCIDVRSEIFRRALETAYPDAETIGFAGFFGFPIEYVPIGHSKGGAQ CPVLLKPAFIVCEAVKDADDVEQSEVLGLRLLRRRAAKALKSFKVSAVSSFSFVETAGLGFAAKIATDSAGVTRPVPSPV VDGLDPEIAARVQPRLTPGELAGRATGFTDPQRVAMAEAVLKAMSLTGPFARLVLLAGHGSTTVNNPHASGLDCGACGGH TGEANARVAAAVLNDWQVREGLRAKGIDIPADCWFIGALHDTTTDDVTLFDEDDVPATLAQDLARLKARLTEAARLARLE RSALLGISNKAAVDEAVIARSRDWSQVRPEWGLAGNTAFIAAPRSFTRGLNLGGRAFLHSYEAARDDGHRTLELIMTAPM VVASWINLQYYGSTVNNAAFGSGNKVLHNIVGQLGVLEGNAGDLRVGLPWQSVHDGSRLIHEPVRLNVFIAAPEAAMDEI MQRHQGVRDLVVNGWVMLHSLSDQGTIRRCVRPGEWRSA
Specific function: Unknown
COG id: COG3002
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0753 family
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): Y6223_BRASO (A4Z142)
Other databases:
- EMBL: CU234118 - RefSeq: YP_001208083.1 - STRING: A4Z142 - GeneID: 5119055 - GenomeReviews: CU234118_GR - KEGG: bra:BRADO6223 - eggNOG: COG3002 - HOGENOM: HBG520117 - OMA: EIIRRHI - ProtClustDB: CLSK2400063 - BioCyc: BSP376:BRADO6223-MONOMER - HAMAP: MF_01871 - InterPro: IPR018752
Pfam domain/function: PF10070 DUF2309
EC number: NA
Molecular weight: Translated: 90554; Mature: 90423
Theoretical pI: Translated: 6.22; Mature: 6.22
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTQAALAMSMTDPIDTTADAGLMARIDSACQRIAPLWPLKHFVAVNPFLGFTGQSFAATA CCCHHHEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCHHHHHH ATFERVVRTRMLMPRAFYRQALDDGRIDDAALAQALGAHPSTGLELNELKQKARAEAGTS HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCC SPPAVVATVAEVLDRLAEGDRYVSLVAFMIDEISAFCATYFDEGQASWPSPVRKLKPYAA CCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCHHHH WRTIAAYDRNPEVMGLTGFRKAIAELPADPVQAIGVIVDRLGIPERAVEDYLVRALFDLG HHHHHHCCCCCCEEECHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHC GWSAYARYIGWSAGLDGQRDDTLLELLAIRLAWGYALYQARTDDAFKAAWAQAMAEAAKL CHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHC PADQRLEETPELAIDLVLHEAYEIALRSKLVARLAGHGAQAVTRLPARPPVQAAFCIDVR CCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCCHHHHHHHH SEIFRRALETAYPDAETIGFAGFFGFPIEYVPIGHSKGGAQCPVLLKPAFIVCEAVKDAD HHHHHHHHHHCCCCHHHCCCHHHHCCCEEEEECCCCCCCCCCCEEECCHHHHHHHHHCCC DVEQSEVLGLRLLRRRAAKALKSFKVSAVSSFSFVETAGLGFAAKIATDSAGVTRPVPSP HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHCCCCEEEEECCCCCCCCCCCCCH VVDGLDPEIAARVQPRLTPGELAGRATGFTDPQRVAMAEAVLKAMSLTGPFARLVLLAGH HHCCCCHHHHHHCCCCCCHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHEEEECC GSTTVNNPHASGLDCGACGGHTGEANARVAAAVLNDWQVREGLRAKGIDIPADCWFIGAL CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEC HDTTTDDVTLFDEDDVPATLAQDLARLKARLTEAARLARLERSALLGISNKAAVDEAVIA CCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH RSRDWSQVRPEWGLAGNTAFIAAPRSFTRGLNLGGRAFLHSYEAARDDGHRTLELIMTAP CCCCHHHCCCCCCCCCCEEEEECCHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHH MVVASWINLQYYGSTVNNAAFGSGNKVLHNIVGQLGVLEGNAGDLRVGLPWQSVHDGSRL HHHHHHHHHEEECCCCCCCCCCCCHHHHHHHHHHHEEEECCCCCEEECCCHHHHCCCHHH IHEPVRLNVFIAAPEAAMDEIMQRHQGVRDLVVNGWVMLHSLSDQGTIRRCVRPGEWRSA HCCCEEEEEEEECCHHHHHHHHHHHCCHHHHHHHCEEEEEECCCCHHHHHHCCCCCCCCC >Mature Secondary Structure TQAALAMSMTDPIDTTADAGLMARIDSACQRIAPLWPLKHFVAVNPFLGFTGQSFAATA CCHHHEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCHHHHHH ATFERVVRTRMLMPRAFYRQALDDGRIDDAALAQALGAHPSTGLELNELKQKARAEAGTS HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCC SPPAVVATVAEVLDRLAEGDRYVSLVAFMIDEISAFCATYFDEGQASWPSPVRKLKPYAA CCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCHHHH WRTIAAYDRNPEVMGLTGFRKAIAELPADPVQAIGVIVDRLGIPERAVEDYLVRALFDLG HHHHHHCCCCCCEEECHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHC GWSAYARYIGWSAGLDGQRDDTLLELLAIRLAWGYALYQARTDDAFKAAWAQAMAEAAKL CHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHC PADQRLEETPELAIDLVLHEAYEIALRSKLVARLAGHGAQAVTRLPARPPVQAAFCIDVR CCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCCHHHHHHHH SEIFRRALETAYPDAETIGFAGFFGFPIEYVPIGHSKGGAQCPVLLKPAFIVCEAVKDAD HHHHHHHHHHCCCCHHHCCCHHHHCCCEEEEECCCCCCCCCCCEEECCHHHHHHHHHCCC DVEQSEVLGLRLLRRRAAKALKSFKVSAVSSFSFVETAGLGFAAKIATDSAGVTRPVPSP HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHCCCCEEEEECCCCCCCCCCCCCH VVDGLDPEIAARVQPRLTPGELAGRATGFTDPQRVAMAEAVLKAMSLTGPFARLVLLAGH HHCCCCHHHHHHCCCCCCHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHEEEECC GSTTVNNPHASGLDCGACGGHTGEANARVAAAVLNDWQVREGLRAKGIDIPADCWFIGAL CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEC HDTTTDDVTLFDEDDVPATLAQDLARLKARLTEAARLARLERSALLGISNKAAVDEAVIA CCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH RSRDWSQVRPEWGLAGNTAFIAAPRSFTRGLNLGGRAFLHSYEAARDDGHRTLELIMTAP CCCCHHHCCCCCCCCCCEEEEECCHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHH MVVASWINLQYYGSTVNNAAFGSGNKVLHNIVGQLGVLEGNAGDLRVGLPWQSVHDGSRL HHHHHHHHHEEECCCCCCCCCCCCHHHHHHHHHHHEEEECCCCCEEECCCHHHHCCCHHH IHEPVRLNVFIAAPEAAMDEIMQRHQGVRDLVVNGWVMLHSLSDQGTIRRCVRPGEWRSA HCCCEEEEEEEECCHHHHHHHHHHHCCHHHHHHHCEEEEEECCCCHHHHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA