| Definition | Bradyrhizobium sp. ORS278 chromosome, complete genome. |
|---|---|
| Accession | NC_009445 |
| Length | 7,456,587 |
Click here to switch to the map view.
The map label for this gene is braF [H]
Identifier: 146342687
GI number: 146342687
Start: 6071277
End: 6072005
Strand: Reverse
Name: braF [H]
Synonym: BRADO5854
Alternate gene names: 146342687
Gene position: 6072005-6071277 (Counterclockwise)
Preceding gene: 146342688
Following gene: 146342686
Centisome position: 81.43
GC content: 68.45
Gene sequence:
>729_bases GTGTCCATCCGTTTCGGGGGCGTTCTGGCGGTCGACAGCATGTCGCTCGACGTCGAGCCGCATGAGATCGTCGGATTGAT CGGCCCGAACGGAGCCGGCAAGACCACCTTCATCAACTGCCTGTCGGGGGCCTATGTGCCGCAGAGCGGCAAGGCCACCT GGAAGGAGGTCGACCTGCTCGGGCGCCAGCCGCATGAACTGATCCGCCGCGGCGTGGTGCGGACGTTCCAGAACGTGGCC TCGCTGCACGATCTGACGGTGCTCGACGTCGTCAAGCTCGGCCAGGCGGTGCGGCATGGTGATCCCATGCGGCAGCTGCG CGACATGCTGCGCAGCGAGCGGGCGCGCGATGCCGAGCTGATCCGCACCATTCTGCAGCCGCTGCGGCTCGCCGAGGTCG CGCACCAGCCGATCCAGAGCCTGTCTTACGGCATGCGCAAGGCCGTCGATCTCGCGCGAGCGCTCGCCGCGCAGCCGCAG ATCCTGCTGCTCGATGAGCCGGTGGCCGGCCTCACCGCCCAGGAGGGCGCGATGATGGCGGGCGTCATTCGCGAGGTTCG CGACCGCGTCGGCTGCGCGGTCGTGATGGTCGAGCACAAGATGGACGTGGTCAACGCGACCTGCGACCGCATCGTCGTGA TGGCCGCCGGGGCGCGGATCTTCGAGGGATCGCCCGCGCAAGTGCAGTCCGATCCGTCGGTCCGTCGCGTCTATCTGGGA GAGCCGTGA
Upstream 100 bases:
>100_bases TGTGTTGACGCAGTTCGACGCTTACAGAGCTTCCCGGCCGACAAGGGAGGCCGGCGTCACGGGAGGAAGGGTCGAGGCCA TGGCTCTCCGCGCGAGAGAT
Downstream 100 bases:
>100_bases TGCTGATGTTCACCCTGCAGCTCATGGTCGCGGGCATCGCGACCGGCAGCGTCTACGCGCTCATCGCGCTCGGCATCGTG CTGATCTACAAATGCTCCGG
Product: branched chain amino acid ABC transporter ATP-binding protein
Products: ADP; phosphate; L-valine [Cytoplasm]; ADP; L-iso-leucine [Cytoplasm]; L-leucine [Cytoplasm] [C]
Alternate protein names: LIV-I protein G [H]
Number of amino acids: Translated: 242; Mature: 241
Protein sequence:
>242_residues MSIRFGGVLAVDSMSLDVEPHEIVGLIGPNGAGKTTFINCLSGAYVPQSGKATWKEVDLLGRQPHELIRRGVVRTFQNVA SLHDLTVLDVVKLGQAVRHGDPMRQLRDMLRSERARDAELIRTILQPLRLAEVAHQPIQSLSYGMRKAVDLARALAAQPQ ILLLDEPVAGLTAQEGAMMAGVIREVRDRVGCAVVMVEHKMDVVNATCDRIVVMAAGARIFEGSPAQVQSDPSVRRVYLG EP
Sequences:
>Translated_242_residues MSIRFGGVLAVDSMSLDVEPHEIVGLIGPNGAGKTTFINCLSGAYVPQSGKATWKEVDLLGRQPHELIRRGVVRTFQNVA SLHDLTVLDVVKLGQAVRHGDPMRQLRDMLRSERARDAELIRTILQPLRLAEVAHQPIQSLSYGMRKAVDLARALAAQPQ ILLLDEPVAGLTAQEGAMMAGVIREVRDRVGCAVVMVEHKMDVVNATCDRIVVMAAGARIFEGSPAQVQSDPSVRRVYLG EP >Mature_241_residues SIRFGGVLAVDSMSLDVEPHEIVGLIGPNGAGKTTFINCLSGAYVPQSGKATWKEVDLLGRQPHELIRRGVVRTFQNVAS LHDLTVLDVVKLGQAVRHGDPMRQLRDMLRSERARDAELIRTILQPLRLAEVAHQPIQSLSYGMRKAVDLARALAAQPQI LLLDEPVAGLTAQEGAMMAGVIREVRDRVGCAVVMVEHKMDVVNATCDRIVVMAAGARIFEGSPAQVQSDPSVRRVYLGE P
Specific function: Component of the leucine-specific transport system [H]
COG id: COG0411
COG function: function code E; ABC-type branched-chain amino acid transport systems, ATPase component
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transporter domain [H]
Homologues:
Organism=Homo sapiens, GI27881501, Length=224, Percent_Identity=28.125, Blast_Score=90, Evalue=2e-18, Organism=Homo sapiens, GI30795238, Length=224, Percent_Identity=28.125, Blast_Score=90, Evalue=2e-18, Organism=Homo sapiens, GI31657092, Length=232, Percent_Identity=30.1724137931034, Blast_Score=82, Evalue=3e-16, Organism=Homo sapiens, GI45446740, Length=217, Percent_Identity=28.110599078341, Blast_Score=81, Evalue=7e-16, Organism=Homo sapiens, GI47078218, Length=217, Percent_Identity=28.110599078341, Blast_Score=81, Evalue=7e-16, Organism=Homo sapiens, GI27477115, Length=228, Percent_Identity=26.3157894736842, Blast_Score=80, Evalue=2e-15, Organism=Homo sapiens, GI6005701, Length=229, Percent_Identity=26.2008733624454, Blast_Score=78, Evalue=7e-15, Organism=Homo sapiens, GI105990541, Length=210, Percent_Identity=30.952380952381, Blast_Score=77, Evalue=1e-14, Organism=Homo sapiens, GI153792144, Length=209, Percent_Identity=25.8373205741627, Blast_Score=77, Evalue=1e-14, Organism=Homo sapiens, GI116734710, Length=209, Percent_Identity=29.6650717703349, Blast_Score=72, Evalue=3e-13, Organism=Homo sapiens, GI27436953, Length=215, Percent_Identity=27.4418604651163, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI89111135, Length=240, Percent_Identity=26.25, Blast_Score=69, Evalue=3e-12, Organism=Homo sapiens, GI215820660, Length=204, Percent_Identity=25.9803921568627, Blast_Score=69, Evalue=5e-12, Organism=Homo sapiens, GI20143975, Length=204, Percent_Identity=25.9803921568627, Blast_Score=69, Evalue=5e-12, Organism=Homo sapiens, GI21536376, Length=222, Percent_Identity=26.5765765765766, Blast_Score=67, Evalue=1e-11, Organism=Escherichia coli, GI1789864, Length=251, Percent_Identity=38.2470119521912, Blast_Score=171, Evalue=3e-44, Organism=Escherichia coli, GI1789593, Length=238, Percent_Identity=33.6134453781513, Blast_Score=110, Evalue=1e-25, Organism=Escherichia coli, GI1788761, Length=243, Percent_Identity=31.6872427983539, Blast_Score=105, Evalue=2e-24, Organism=Escherichia coli, GI1788472, Length=218, Percent_Identity=30.2752293577982, Blast_Score=105, Evalue=4e-24, Organism=Escherichia coli, GI1789991, Length=229, Percent_Identity=30.1310043668122, Blast_Score=100, Evalue=6e-23, Organism=Escherichia coli, GI1790525, Length=232, Percent_Identity=28.8793103448276, Blast_Score=99, Evalue=3e-22, Organism=Escherichia coli, GI87081791, Length=238, Percent_Identity=28.9915966386555, Blast_Score=95, Evalue=5e-21, Organism=Escherichia coli, GI48995001, Length=219, Percent_Identity=29.6803652968037, Blast_Score=93, Evalue=2e-20, Organism=Escherichia coli, GI1788210, Length=213, Percent_Identity=29.5774647887324, Blast_Score=92, Evalue=3e-20, Organism=Escherichia coli, GI1790739, Length=243, Percent_Identity=29.2181069958848, Blast_Score=92, Evalue=3e-20, Organism=Escherichia coli, GI1790544, Length=239, Percent_Identity=28.8702928870293, Blast_Score=91, Evalue=6e-20, Organism=Escherichia coli, GI1788897, Length=211, Percent_Identity=30.3317535545024, Blast_Score=88, Evalue=5e-19, Organism=Escherichia coli, GI1789891, Length=215, Percent_Identity=31.6279069767442, Blast_Score=87, Evalue=1e-18, Organism=Escherichia coli, GI1790190, Length=229, Percent_Identity=27.5109170305677, Blast_Score=86, Evalue=2e-18, Organism=Escherichia coli, GI1786398, Length=225, Percent_Identity=28.8888888888889, Blast_Score=86, Evalue=2e-18, Organism=Escherichia coli, GI87081709, Length=232, Percent_Identity=28.0172413793103, Blast_Score=86, Evalue=2e-18, Organism=Escherichia coli, GI1787500, Length=230, Percent_Identity=25.6521739130435, Blast_Score=86, Evalue=2e-18, Organism=Escherichia coli, GI1787370, Length=242, Percent_Identity=27.2727272727273, Blast_Score=86, Evalue=2e-18, Organism=Escherichia coli, GI1789032, Length=243, Percent_Identity=29.6296296296296, Blast_Score=86, Evalue=3e-18, Organism=Escherichia coli, GI1787029, Length=245, Percent_Identity=27.7551020408163, Blast_Score=85, Evalue=5e-18, Organism=Escherichia coli, GI87081782, Length=250, Percent_Identity=28.4, Blast_Score=84, Evalue=7e-18, Organism=Escherichia coli, GI1788225, Length=236, Percent_Identity=27.5423728813559, Blast_Score=84, Evalue=8e-18, Organism=Escherichia coli, GI1786563, Length=239, Percent_Identity=29.7071129707113, Blast_Score=84, Evalue=1e-17, Organism=Escherichia coli, GI1787759, Length=235, Percent_Identity=28.5106382978723, Blast_Score=82, Evalue=4e-17, Organism=Escherichia coli, GI1790467, Length=240, Percent_Identity=27.0833333333333, Blast_Score=82, Evalue=4e-17, Organism=Escherichia coli, GI1789672, Length=240, Percent_Identity=26.25, Blast_Score=81, Evalue=7e-17, Organism=Escherichia coli, GI48994997, Length=224, Percent_Identity=29.0178571428571, Blast_Score=80, Evalue=9e-17, Organism=Escherichia coli, GI87082268, Length=241, Percent_Identity=26.9709543568465, Blast_Score=80, Evalue=9e-17, Organism=Escherichia coli, GI1786345, Length=243, Percent_Identity=26.7489711934156, Blast_Score=80, Evalue=1e-16, Organism=Escherichia coli, GI1788165, Length=238, Percent_Identity=26.890756302521, Blast_Score=80, Evalue=1e-16, Organism=Escherichia coli, GI1786803, Length=238, Percent_Identity=22.6890756302521, Blast_Score=80, Evalue=2e-16, Organism=Escherichia coli, GI1787712, Length=215, Percent_Identity=29.3023255813954, Blast_Score=79, Evalue=2e-16, Organism=Escherichia coli, GI1786319, Length=222, Percent_Identity=27.4774774774775, Blast_Score=76, Evalue=2e-15, Organism=Escherichia coli, GI48994943, Length=231, Percent_Identity=28.1385281385281, Blast_Score=75, Evalue=3e-15, Organism=Escherichia coli, GI1787089, Length=235, Percent_Identity=30.6382978723404, Blast_Score=75, Evalue=5e-15, Organism=Escherichia coli, GI1789873, Length=219, Percent_Identity=30.1369863013699, Blast_Score=75, Evalue=6e-15, Organism=Escherichia coli, GI1789962, Length=228, Percent_Identity=25.8771929824561, Blast_Score=74, Evalue=1e-14, Organism=Escherichia coli, GI48994883, Length=235, Percent_Identity=25.1063829787234, Blast_Score=74, Evalue=1e-14, Organism=Escherichia coli, GI87082267, Length=239, Percent_Identity=25.1046025104602, Blast_Score=70, Evalue=1e-13, Organism=Escherichia coli, GI1787758, Length=235, Percent_Identity=26.8085106382979, Blast_Score=69, Evalue=2e-13, Organism=Escherichia coli, GI1786253, Length=227, Percent_Identity=28.6343612334802, Blast_Score=68, Evalue=7e-13, Organism=Escherichia coli, GI1790534, Length=218, Percent_Identity=30.2752293577982, Blast_Score=65, Evalue=5e-12, Organism=Escherichia coli, GI1789586, Length=237, Percent_Identity=25.3164556962025, Blast_Score=64, Evalue=7e-12, Organism=Escherichia coli, GI1786703, Length=205, Percent_Identity=28.780487804878, Blast_Score=64, Evalue=9e-12, Organism=Escherichia coli, GI1786654, Length=224, Percent_Identity=27.6785714285714, Blast_Score=62, Evalue=2e-11, Organism=Escherichia coli, GI145693107, Length=245, Percent_Identity=25.7142857142857, Blast_Score=62, Evalue=3e-11, Organism=Escherichia coli, GI1787792, Length=234, Percent_Identity=22.6495726495727, Blast_Score=62, Evalue=5e-11, Organism=Caenorhabditis elegans, GI17510237, Length=226, Percent_Identity=26.1061946902655, Blast_Score=89, Evalue=2e-18, Organism=Caenorhabditis elegans, GI71983523, Length=226, Percent_Identity=31.4159292035398, Blast_Score=87, Evalue=6e-18, Organism=Caenorhabditis elegans, GI71983516, Length=226, Percent_Identity=31.4159292035398, Blast_Score=87, Evalue=6e-18, Organism=Caenorhabditis elegans, GI71983510, Length=226, Percent_Identity=31.4159292035398, Blast_Score=87, Evalue=6e-18, Organism=Caenorhabditis elegans, GI115533608, Length=211, Percent_Identity=29.8578199052133, Blast_Score=80, Evalue=6e-16, Organism=Caenorhabditis elegans, GI17565586, Length=216, Percent_Identity=29.1666666666667, Blast_Score=74, Evalue=6e-14, Organism=Caenorhabditis elegans, GI71992290, Length=207, Percent_Identity=28.5024154589372, Blast_Score=73, Evalue=2e-13, Organism=Caenorhabditis elegans, GI17558664, Length=205, Percent_Identity=28.780487804878, Blast_Score=71, Evalue=4e-13, Organism=Caenorhabditis elegans, GI193202349, Length=221, Percent_Identity=26.6968325791855, Blast_Score=70, Evalue=8e-13, Organism=Drosophila melanogaster, GI24643674, Length=223, Percent_Identity=26.9058295964126, Blast_Score=79, Evalue=3e-15, Organism=Drosophila melanogaster, GI221512771, Length=220, Percent_Identity=26.3636363636364, Blast_Score=75, Evalue=3e-14, Organism=Drosophila melanogaster, GI24659289, Length=219, Percent_Identity=27.8538812785388, Blast_Score=68, Evalue=6e-12, Organism=Drosophila melanogaster, GI45552437, Length=233, Percent_Identity=27.4678111587983, Blast_Score=68, Evalue=6e-12, Organism=Drosophila melanogaster, GI28574150, Length=216, Percent_Identity=25.9259259259259, Blast_Score=67, Evalue=9e-12, Organism=Drosophila melanogaster, GI116007328, Length=216, Percent_Identity=25.9259259259259, Blast_Score=67, Evalue=9e-12, Organism=Drosophila melanogaster, GI24585557, Length=233, Percent_Identity=27.4678111587983, Blast_Score=67, Evalue=9e-12, Organism=Drosophila melanogaster, GI281363262, Length=211, Percent_Identity=26.5402843601896, Blast_Score=66, Evalue=2e-11, Organism=Drosophila melanogaster, GI24653245, Length=204, Percent_Identity=26.9607843137255, Blast_Score=66, Evalue=2e-11, Organism=Drosophila melanogaster, GI85724858, Length=214, Percent_Identity=27.1028037383178, Blast_Score=64, Evalue=6e-11, Organism=Drosophila melanogaster, GI85724856, Length=214, Percent_Identity=27.1028037383178, Blast_Score=64, Evalue=6e-11, Organism=Drosophila melanogaster, GI24580547, Length=214, Percent_Identity=27.1028037383178, Blast_Score=64, Evalue=6e-11, Organism=Drosophila melanogaster, GI24580551, Length=214, Percent_Identity=27.1028037383178, Blast_Score=64, Evalue=6e-11, Organism=Drosophila melanogaster, GI24580549, Length=214, Percent_Identity=27.1028037383178, Blast_Score=64, Evalue=6e-11, Organism=Drosophila melanogaster, GI24580545, Length=214, Percent_Identity=27.1028037383178, Blast_Score=64, Evalue=6e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR003593 [H]
Pfam domain/function: PF00005 ABC_tran [H]
EC number: NA
Molecular weight: Translated: 26343; Mature: 26212
Theoretical pI: Translated: 8.11; Mature: 8.11
Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 4.1 %Met (Translated Protein) 5.4 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 3.7 %Met (Mature Protein) 5.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSIRFGGVLAVDSMSLDVEPHEIVGLIGPNGAGKTTFINCLSGAYVPQSGKATWKEVDLL CCEECCCEEEEECCCCCCCHHHEEEEECCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHH GRQPHELIRRGVVRTFQNVASLHDLTVLDVVKLGQAVRHGDPMRQLRDMLRSERARDAEL CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHH IRTILQPLRLAEVAHQPIQSLSYGMRKAVDLARALAAQPQILLLDEPVAGLTAQEGAMMA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHH GVIREVRDRVGCAVVMVEHKMDVVNATCDRIVVMAAGARIFEGSPAQVQSDPSVRRVYLG HHHHHHHHHHCEEEEEEHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCCCCCCEEEECC EP CC >Mature Secondary Structure SIRFGGVLAVDSMSLDVEPHEIVGLIGPNGAGKTTFINCLSGAYVPQSGKATWKEVDLL CEECCCEEEEECCCCCCCHHHEEEEECCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHH GRQPHELIRRGVVRTFQNVASLHDLTVLDVVKLGQAVRHGDPMRQLRDMLRSERARDAEL CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHH IRTILQPLRLAEVAHQPIQSLSYGMRKAVDLARALAAQPQILLLDEPVAGLTAQEGAMMA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHH GVIREVRDRVGCAVVMVEHKMDVVNATCDRIVVMAAGARIFEGSPAQVQSDPSVRRVYLG HHHHHHHHHHCEEEEEEHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCCCCCCEEEECC EP CC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; L-valine [Periplasm]; H2O; ATP; L-iso-leucine [Periplasm]; L-leucine [Periplasm] [C]
Specific reaction: ATP + L-valine [Periplasm] + H2O = ADP + phosphate + L-valine [Cytoplasm] ATP + L-iso-leucine [Periplasm] + H2O = ADP + phosphate + L-iso-leucine [Cytoplasm] ATP + L-leucine [Periplasm] + H2O = ADP + phosphate + L-leucine [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]