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The map label for this gene is p49 [H]

Identifier: 146342482

GI number: 146342482

Start: 5830302

End: 5831903

Strand: Direct

Name: p49 [H]

Synonym: BRADO5642

Alternate gene names: 146342482

Gene position: 5830302-5831903 (Clockwise)

Preceding gene: 146342477

Following gene: 146342484

Centisome position: 78.19

GC content: 68.35

Gene sequence:

>1602_bases
ATGAACGAAACCGACGTGATCATCATCGGCGCGGGCCATAACGGCCTGACCTGTGCGGCCTATCTGGCGATGGCCGGCCT
GCGCGTGCACGTCGTCGAGCGCCGCAAGGTCGTCGGCGGCGCGGCGGTGACCGAGGAGTTTCACCCGGGCTTCCGCAACT
CGGTGGCGTCCTACACGGTGAGCCTGCTCAATCCGCGCGTCATTGCCGACCTCAAGCTGCACCAGCACGGGCTCGAGATC
GTCGAGCGTCGCGCGCAAAACTTTCTCCCCGCGCCGGATGGCCGCTATCTGCTGACCGGCGAAGGTCGCACACAGGCGTC
GGTCGCGCGGCTCAGCCCGCGCGATGCGGAGGCCATCGGCCCCTTCTCCGAACGGCTCGAGGCGATCGCGGACGTGCTGC
GCAGCCTGGTGCTGCGCGCTCCGCCCAATCTGGTCGCGCAATTCGGCGTGGGCGCGATCCGCGAAGCGTTCAACGCGCTC
GGCACCGCCAATGCGCTGCGCGCATTGTCGCTGGAGCAGCAGCGCGATCTGCTCGATCTGTTCACGCGATCGGCCGGCGA
GATGCTCGACGAGATCTTCGAGACCGATCTGGTCAAGGCGCTGTTCGGCTTCGACGCCATCGTCGGCAACTATGCCAGCC
CCTACGCCGCCGGCTCGGCCTATGTGATGCTGCATCACGCCTTTGGCGAAGTGAACGGAAAGAAGGGCGTCTGGGGCCAC
GCCATCGGCGGCATGGGCGCGATCACCCAGGCGATGGCGCGGGCGCTGAAAGAGCTGGGGACGCTGGTCGAGGTCGACTG
CGGCGTGCGTGAGGTGATCGTGGAGCGCGACCGTGCCGTGGGCGTGGTGCTGGAGGATGGCCGCGCGCTGCGCGCCCGCT
TCGTCGTCGCCAACGTCAATCCCAAGCTGCTGTACACCCGCCTGGTGCCGGAAGGCGCCCTGCCCGCGGCCTTCCTGAGC
CGGATCCGCAATTGGCGCAACGGCTCGGGCACGTTCCGCATGAACGTCGCGCTGAGCCGCCTGCCCTCGTTCAGCGCGCT
GCCCGGCGATGGCGATCATCTCTCCGCCGGCATCATCCTGGCGCCCAGCCTCGGCTACATGGACCAGGCCTATCTCGATG
CGCGCGCCCATGGTTGGAGCCGTGATCCGGTCGTCGAGCTGCTGATTCCGTCGACGCTCGATGCCACGCTGGCGCCCCCC
GGCCAGCACGTCGCCAGCCTGTTCTGCCAGCATGTCGCGCCGGAGCTTCCGGACGGCCGGTCATGGGACGATCATCGCGA
CGCGGTCGCTGATCTCATGATCGCGACCGTCGACCGCTACGCGCCGGGATTTGCCGCCAGCGTCCTCGGCAGGCAGGTGC
TGTCACCGCTCGATCTCGAGCGCCAGTTCGGCCTGCTGGGCGGCGATATCTTTCACGGCGCGCTGAGCTTGAACCAGCTG
TTTTCCGCCCGGCCGATGCTGGGGCATGCCGACTATCGCTCGCCGCTGAAGGGGCTCTATCACTGCGGCTCCGGCAGCCA
TCCAGGCGGCGGGGTGACCGGCGCGCCCGGCCATAATGCCGCCCAGGCCGTCCTGGCCGATCACCGGGCGATCTTCAATT
GA

Upstream 100 bases:

>100_bases
TCCCCTTGACGCGGCGACGATCCGGGGCGACAGCACCATCTCGTCGCGGTTCCCGGCGACCCGCACAGCCGGTGATTAAT
CAGGGCTTTTTGAAGCGCAC

Downstream 100 bases:

>100_bases
GGACAGGCGGAGGAAAGGCTGTTCACCGGTGCATGGAGAGCCTGTGGACAAGCAGCAGCCTACCTTGTGGATGCCGGGCA
CTGGGGCTGTGCATAACTCT

Product: putative phytoene dehydrogenase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 533; Mature: 533

Protein sequence:

>533_residues
MNETDVIIIGAGHNGLTCAAYLAMAGLRVHVVERRKVVGGAAVTEEFHPGFRNSVASYTVSLLNPRVIADLKLHQHGLEI
VERRAQNFLPAPDGRYLLTGEGRTQASVARLSPRDAEAIGPFSERLEAIADVLRSLVLRAPPNLVAQFGVGAIREAFNAL
GTANALRALSLEQQRDLLDLFTRSAGEMLDEIFETDLVKALFGFDAIVGNYASPYAAGSAYVMLHHAFGEVNGKKGVWGH
AIGGMGAITQAMARALKELGTLVEVDCGVREVIVERDRAVGVVLEDGRALRARFVVANVNPKLLYTRLVPEGALPAAFLS
RIRNWRNGSGTFRMNVALSRLPSFSALPGDGDHLSAGIILAPSLGYMDQAYLDARAHGWSRDPVVELLIPSTLDATLAPP
GQHVASLFCQHVAPELPDGRSWDDHRDAVADLMIATVDRYAPGFAASVLGRQVLSPLDLERQFGLLGGDIFHGALSLNQL
FSARPMLGHADYRSPLKGLYHCGSGSHPGGGVTGAPGHNAAQAVLADHRAIFN

Sequences:

>Translated_533_residues
MNETDVIIIGAGHNGLTCAAYLAMAGLRVHVVERRKVVGGAAVTEEFHPGFRNSVASYTVSLLNPRVIADLKLHQHGLEI
VERRAQNFLPAPDGRYLLTGEGRTQASVARLSPRDAEAIGPFSERLEAIADVLRSLVLRAPPNLVAQFGVGAIREAFNAL
GTANALRALSLEQQRDLLDLFTRSAGEMLDEIFETDLVKALFGFDAIVGNYASPYAAGSAYVMLHHAFGEVNGKKGVWGH
AIGGMGAITQAMARALKELGTLVEVDCGVREVIVERDRAVGVVLEDGRALRARFVVANVNPKLLYTRLVPEGALPAAFLS
RIRNWRNGSGTFRMNVALSRLPSFSALPGDGDHLSAGIILAPSLGYMDQAYLDARAHGWSRDPVVELLIPSTLDATLAPP
GQHVASLFCQHVAPELPDGRSWDDHRDAVADLMIATVDRYAPGFAASVLGRQVLSPLDLERQFGLLGGDIFHGALSLNQL
FSARPMLGHADYRSPLKGLYHCGSGSHPGGGVTGAPGHNAAQAVLADHRAIFN
>Mature_533_residues
MNETDVIIIGAGHNGLTCAAYLAMAGLRVHVVERRKVVGGAAVTEEFHPGFRNSVASYTVSLLNPRVIADLKLHQHGLEI
VERRAQNFLPAPDGRYLLTGEGRTQASVARLSPRDAEAIGPFSERLEAIADVLRSLVLRAPPNLVAQFGVGAIREAFNAL
GTANALRALSLEQQRDLLDLFTRSAGEMLDEIFETDLVKALFGFDAIVGNYASPYAAGSAYVMLHHAFGEVNGKKGVWGH
AIGGMGAITQAMARALKELGTLVEVDCGVREVIVERDRAVGVVLEDGRALRARFVVANVNPKLLYTRLVPEGALPAAFLS
RIRNWRNGSGTFRMNVALSRLPSFSALPGDGDHLSAGIILAPSLGYMDQAYLDARAHGWSRDPVVELLIPSTLDATLAPP
GQHVASLFCQHVAPELPDGRSWDDHRDAVADLMIATVDRYAPGFAASVLGRQVLSPLDLERQFGLLGGDIFHGALSLNQL
FSARPMLGHADYRSPLKGLYHCGSGSHPGGGVTGAPGHNAAQAVLADHRAIFN

Specific function: Unknown

COG id: COG1233

COG function: function code Q; Phytoene dehydrogenase and related proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI229577391, Length=550, Percent_Identity=41.8181818181818, Blast_Score=396, Evalue=1e-110,
Organism=Caenorhabditis elegans, GI17540238, Length=522, Percent_Identity=37.5478927203065, Blast_Score=348, Evalue=4e-96,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 57016; Mature: 57016

Theoretical pI: Translated: 6.94; Mature: 6.94

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNETDVIIIGAGHNGLTCAAYLAMAGLRVHVVERRKVVGGAAVTEEFHPGFRNSVASYTV
CCCCCEEEEECCCCCHHHHHHHHHHCCCEEEEHHHHHHCCHHHHHHHCCCHHHHHHHHHH
SLLNPRVIADLKLHQHGLEIVERRAQNFLPAPDGRYLLTGEGRTQASVARLSPRDAEAIG
HHCCCCCEEHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCHHHHHHCCCCCCHHCC
PFSERLEAIADVLRSLVLRAPPNLVAQFGVGAIREAFNALGTANALRALSLEQQRDLLDL
CHHHHHHHHHHHHHHHHHHCCHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FTRSAGEMLDEIFETDLVKALFGFDAIVGNYASPYAAGSAYVMLHHAFGEVNGKKGVWGH
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEHHHCCCCCCCCCHH
AIGGMGAITQAMARALKELGTLVEVDCGVREVIVERDRAVGVVLEDGRALRARFVVANVN
HCCCHHHHHHHHHHHHHHHCCEEEECCCHHHHHHHCCCEEEEEECCCCEEEEEEEEEECC
PKLLYTRLVPEGALPAAFLSRIRNWRNGSGTFRMNVALSRLPSFSALPGDGDHLSAGIIL
CCEEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEEEHHHHCCCCCCCCCCCCCCCCCEEE
APSLGYMDQAYLDARAHGWSRDPVVELLIPSTLDATLAPPGQHVASLFCQHVAPELPDGR
ECCCCCHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCC
SWDDHRDAVADLMIATVDRYAPGFAASVLGRQVLSPLDLERQFGLLGGDIFHGALSLNQL
CCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHCCCCHHHHHHHHHHHHH
FSARPMLGHADYRSPLKGLYHCGSGSHPGGGVTGAPGHNAAQAVLADHRAIFN
HHCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC
>Mature Secondary Structure
MNETDVIIIGAGHNGLTCAAYLAMAGLRVHVVERRKVVGGAAVTEEFHPGFRNSVASYTV
CCCCCEEEEECCCCCHHHHHHHHHHCCCEEEEHHHHHHCCHHHHHHHCCCHHHHHHHHHH
SLLNPRVIADLKLHQHGLEIVERRAQNFLPAPDGRYLLTGEGRTQASVARLSPRDAEAIG
HHCCCCCEEHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCHHHHHHCCCCCCHHCC
PFSERLEAIADVLRSLVLRAPPNLVAQFGVGAIREAFNALGTANALRALSLEQQRDLLDL
CHHHHHHHHHHHHHHHHHHCCHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FTRSAGEMLDEIFETDLVKALFGFDAIVGNYASPYAAGSAYVMLHHAFGEVNGKKGVWGH
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEHHHCCCCCCCCCHH
AIGGMGAITQAMARALKELGTLVEVDCGVREVIVERDRAVGVVLEDGRALRARFVVANVN
HCCCHHHHHHHHHHHHHHHCCEEEECCCHHHHHHHCCCEEEEEECCCCEEEEEEEEEECC
PKLLYTRLVPEGALPAAFLSRIRNWRNGSGTFRMNVALSRLPSFSALPGDGDHLSAGIIL
CCEEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEEEHHHHCCCCCCCCCCCCCCCCCEEE
APSLGYMDQAYLDARAHGWSRDPVVELLIPSTLDATLAPPGQHVASLFCQHVAPELPDGR
ECCCCCHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCC
SWDDHRDAVADLMIATVDRYAPGFAASVLGRQVLSPLDLERQFGLLGGDIFHGALSLNQL
CCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHCCCCHHHHHHHHHHHHH
FSARPMLGHADYRSPLKGLYHCGSGSHPGGGVTGAPGHNAAQAVLADHRAIFN
HHCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 3453116 [H]