Click here to switch to the map view.

The map label for this gene is ybfF [C]

Identifier: 146341327

GI number: 146341327

Start: 4611006

End: 4611794

Strand: Reverse

Name: ybfF [C]

Synonym: BRADO4409

Alternate gene names: 146341327

Gene position: 4611794-4611006 (Counterclockwise)

Preceding gene: 146341328

Following gene: 146341326

Centisome position: 61.85

GC content: 62.99

Gene sequence:

>789_bases
ATGACCACCGATCTTCCGGAAACGAAACGTCTCGCGTTCGGCGAAAAGACGCTGGCCTATTTCGAACTGGGTTCTGGCCC
GGCCCTCGTCATCGTTCATGGCGTTGGTGGCCATAAGGAGGATTGGCTGAGTGCAGCTCGGCGACTCGCATCGACGCACC
GGGTGTTCGCCATCGATATGCTTGGCTTCGGGGCGTCATCGAAGACCGGCGACGATCTTTCGATGCCGGTGCAGAGCGCG
GCGATCAAAGCCCTGCTCGACGCTGAGCAGGTCGACCGCGCCGCGCTGGTGGGCAACTCGGTCGGCGGTTGGGTGGCGAC
GACTTTTGCTGCGACCTATCCCGAGAGAACCGAGCGCCTGGTCATCATCGACGCAGCCGGCTTCAGAGCGATGTTCGAGG
GAGAACCGCCGGTCAACTTCGACCCCAACAGCCCAGAAGAGATGGACAAGCTCATCCACGTCGTCATCAATTCGAAGGTT
GCCGACACGCCCGGTCTCGCAGAGAGCGCCTACCGCGCCTACGTCGAGAGCGGCGAAAAGGCGATCAGCGCCATTTGGGG
CAGGAGCCTGTTCGTTTCGCCTCGCCTCGAGGATCTTTTCCCCAAAGTGACCGTACCGACGGTGATCCTCTGGGGACAGG
ACGACCGGCTGTTTCCCGCCGTGCTTGCCGACGCTTTTCGTGCCCAGCTTCGCGGCTCGCGTGTCGAGATGATTGCGGAT
GCGGGTCACTTCCCGCAGATCGACCAGCCCGATGCGACGGCCGAGGCCATCGCGCGCGCGCTCGTCTGA

Upstream 100 bases:

>100_bases
CCTGCTCTCGTCCACGATCAGCTTATCGGGCGAGTCATTCGGGCCTATGATCCTCTGACAATCAGTTAGCAGGTCACGCC
TCGTCGAGGATTGTCGCACG

Downstream 100 bases:

>100_bases
GGAGTGACTGATGAGTCTGAAGGATCACAATCCGGTCGATGCCAAGACACCGAAACGGGTTGCTATCGTTCTTGCCAACC
CGGCTATCTCGCCAACGTTG

Product: alpha/beta-hydrolase domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 262; Mature: 261

Protein sequence:

>262_residues
MTTDLPETKRLAFGEKTLAYFELGSGPALVIVHGVGGHKEDWLSAARRLASTHRVFAIDMLGFGASSKTGDDLSMPVQSA
AIKALLDAEQVDRAALVGNSVGGWVATTFAATYPERTERLVIIDAAGFRAMFEGEPPVNFDPNSPEEMDKLIHVVINSKV
ADTPGLAESAYRAYVESGEKAISAIWGRSLFVSPRLEDLFPKVTVPTVILWGQDDRLFPAVLADAFRAQLRGSRVEMIAD
AGHFPQIDQPDATAEAIARALV

Sequences:

>Translated_262_residues
MTTDLPETKRLAFGEKTLAYFELGSGPALVIVHGVGGHKEDWLSAARRLASTHRVFAIDMLGFGASSKTGDDLSMPVQSA
AIKALLDAEQVDRAALVGNSVGGWVATTFAATYPERTERLVIIDAAGFRAMFEGEPPVNFDPNSPEEMDKLIHVVINSKV
ADTPGLAESAYRAYVESGEKAISAIWGRSLFVSPRLEDLFPKVTVPTVILWGQDDRLFPAVLADAFRAQLRGSRVEMIAD
AGHFPQIDQPDATAEAIARALV
>Mature_261_residues
TTDLPETKRLAFGEKTLAYFELGSGPALVIVHGVGGHKEDWLSAARRLASTHRVFAIDMLGFGASSKTGDDLSMPVQSAA
IKALLDAEQVDRAALVGNSVGGWVATTFAATYPERTERLVIIDAAGFRAMFEGEPPVNFDPNSPEEMDKLIHVVINSKVA
DTPGLAESAYRAYVESGEKAISAIWGRSLFVSPRLEDLFPKVTVPTVILWGQDDRLFPAVLADAFRAQLRGSRVEMIADA
GHFPQIDQPDATAEAIARALV

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the dmpD/todF/xylF esterase family [H]

Homologues:

Organism=Escherichia coli, GI1786902, Length=247, Percent_Identity=27.5303643724696, Blast_Score=75, Evalue=6e-15,
Organism=Escherichia coli, GI87081721, Length=262, Percent_Identity=24.0458015267176, Blast_Score=70, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI25146278, Length=113, Percent_Identity=38.0530973451327, Blast_Score=75, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI32566936, Length=107, Percent_Identity=36.4485981308411, Blast_Score=71, Evalue=5e-13,
Organism=Caenorhabditis elegans, GI17558492, Length=107, Percent_Identity=36.4485981308411, Blast_Score=71, Evalue=7e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000073
- InterPro:   IPR000639 [H]

Pfam domain/function: PF00561 Abhydrolase_1 [H]

EC number: 3.1.-.- [C]

Molecular weight: Translated: 28237; Mature: 28106

Theoretical pI: Translated: 4.78; Mature: 4.78

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTDLPETKRLAFGEKTLAYFELGSGPALVIVHGVGGHKEDWLSAARRLASTHRVFAIDM
CCCCCCCHHHHHCCCCEEEEEEECCCCEEEEEECCCCCHHHHHHHHHHHHHHCCEEEEEE
LGFGASSKTGDDLSMPVQSAAIKALLDAEQVDRAALVGNSVGGWVATTFAATYPERTERL
EECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCEE
VIIDAAGFRAMFEGEPPVNFDPNSPEEMDKLIHVVINSKVADTPGLAESAYRAYVESGEK
EEEECCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHH
AISAIWGRSLFVSPRLEDLFPKVTVPTVILWGQDDRLFPAVLADAFRAQLRGSRVEMIAD
HHHHHHCCCEEECCCHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEC
AGHFPQIDQPDATAEAIARALV
CCCCCCCCCCCHHHHHHHHHCC
>Mature Secondary Structure 
TTDLPETKRLAFGEKTLAYFELGSGPALVIVHGVGGHKEDWLSAARRLASTHRVFAIDM
CCCCCCHHHHHCCCCEEEEEEECCCCEEEEEECCCCCHHHHHHHHHHHHHHCCEEEEEE
LGFGASSKTGDDLSMPVQSAAIKALLDAEQVDRAALVGNSVGGWVATTFAATYPERTERL
EECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCEE
VIIDAAGFRAMFEGEPPVNFDPNSPEEMDKLIHVVINSKVADTPGLAESAYRAYVESGEK
EEEECCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHH
AISAIWGRSLFVSPRLEDLFPKVTVPTVILWGQDDRLFPAVLADAFRAQLRGSRVEMIAD
HHHHHHCCCEEECCCHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEC
AGHFPQIDQPDATAEAIARALV
CCCCCCCCCCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]