| Definition | Bradyrhizobium sp. ORS278 chromosome, complete genome. |
|---|---|
| Accession | NC_009445 |
| Length | 7,456,587 |
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The map label for this gene is 146341326
Identifier: 146341326
GI number: 146341326
Start: 4610225
End: 4610995
Strand: Reverse
Name: 146341326
Synonym: BRADO4408
Alternate gene names: NA
Gene position: 4610995-4610225 (Counterclockwise)
Preceding gene: 146341327
Following gene: 146341324
Centisome position: 61.84
GC content: 60.18
Gene sequence:
>771_bases ATGAGTCTGAAGGATCACAATCCGGTCGATGCCAAGACACCGAAACGGGTTGCTATCGTTCTTGCCAACCCGGCTATCTC GCCAACGTTGGGTACACCGGTCGGGTTCTGGTGGAGCGAACTGACGCACCCGTGGTTTGCCTTCCGAGAAAAAGGCTACG TCGTGAAGCTGTTCAGCTACGGCGGAGGCAAGGTCGAACCTGATGCGATGAGCGACCCGGAAGATCCGACCGGCTATTCG GCAGGCGACCTCATCACCCAGGGCTTCAGGCACACACCGTCATTGATGGCGCTGTTGGAGAATACCAAACCAGTAAGCGC GATCAGGCTCGAAGACTTCGACGCGATCCTGATCGCTGGCGGTCAGGCGCCGATGGTGACCATGCCCGACCAGACGGCGC TGCATGGGCTGTTCGCGGCCTTCTACGAGGCGGGCAAGGTCGCGTGCTGTCTGTGCCACGGCTCGTCGATCCTGCGTTAT GCGAGGCTCTCGACAGGCGAATATCTCTGCAAGGGCAAGACCGTCACGGGCTTCGCCAATGTCGAGGAGGATTTCGGTGA TCACGCCGTGTGGGACCTCGGCTTCTTGCCACGCGGCAAGCATCTGATGCCATGGCGGATCGAAGACGAACTCAGAACAC TGGGCGCCAATTATGTCCAGGCCGGACTCTGGCGCGGCTTTGCCGTGCGGGACGGAAATCTCGTCACGGGCCAGCAAAAT TTCTCAGGCATGGAAACCGCCGAGCTCGTCATCCGCGCCCTCGGAGAATGA
Upstream 100 bases:
>100_bases CGTGTCGAGATGATTGCGGATGCGGGTCACTTCCCGCAGATCGACCAGCCCGATGCGACGGCCGAGGCCATCGCGCGCGC GCTCGTCTGAGGAGTGACTG
Downstream 100 bases:
>100_bases GGCGGCAGCTCGTGATTTAACCTCGCTGTACAATAGGCGCGTTACTCCGCAGCCGGGTGTCACGGCCCGTGCCGAAGAAC GGAGTGAGGGGAGGGCGAAG
Product: putative amidotransferase/amidase
Products: NA
Alternate protein names: ThiJ/PfpI Family Protein; ThiJ/PfpI Domain Protein; ThiJ/PfpI; DJ-1/PfpI Family Protein; Intracellular Protease/Amidase; DJ-1/PfpI Family; NonF-Related Protein; Peptidase; DJ-1/PfPI Family Protein; Intracellular Protease/Amidase-Like Protein; Intracellular Protease/Amidase ThiJ/PfpL Family; Exported Pfp1 Family Protein; C56 Family Peptidase; Intracellular Protease/Amidase-Like; Amidotransferase; Protease I; ThiJ/PfpI Protein; Regulatory Protein; ThiJ Protein; NonF Protein; Chaperone Protein; Thij/Pfpi Domain-Containing Protein; Amidotransferase/Amidase; Transcriptional Regulator Fis Family; Protease; Intracellular Protease/Amidase ThiJ/PfpL Family Protein; Pfp1 Family Protein; Fis Family Transcriptional Regulator
Number of amino acids: Translated: 256; Mature: 255
Protein sequence:
>256_residues MSLKDHNPVDAKTPKRVAIVLANPAISPTLGTPVGFWWSELTHPWFAFREKGYVVKLFSYGGGKVEPDAMSDPEDPTGYS AGDLITQGFRHTPSLMALLENTKPVSAIRLEDFDAILIAGGQAPMVTMPDQTALHGLFAAFYEAGKVACCLCHGSSILRY ARLSTGEYLCKGKTVTGFANVEEDFGDHAVWDLGFLPRGKHLMPWRIEDELRTLGANYVQAGLWRGFAVRDGNLVTGQQN FSGMETAELVIRALGE
Sequences:
>Translated_256_residues MSLKDHNPVDAKTPKRVAIVLANPAISPTLGTPVGFWWSELTHPWFAFREKGYVVKLFSYGGGKVEPDAMSDPEDPTGYS AGDLITQGFRHTPSLMALLENTKPVSAIRLEDFDAILIAGGQAPMVTMPDQTALHGLFAAFYEAGKVACCLCHGSSILRY ARLSTGEYLCKGKTVTGFANVEEDFGDHAVWDLGFLPRGKHLMPWRIEDELRTLGANYVQAGLWRGFAVRDGNLVTGQQN FSGMETAELVIRALGE >Mature_255_residues SLKDHNPVDAKTPKRVAIVLANPAISPTLGTPVGFWWSELTHPWFAFREKGYVVKLFSYGGGKVEPDAMSDPEDPTGYSA GDLITQGFRHTPSLMALLENTKPVSAIRLEDFDAILIAGGQAPMVTMPDQTALHGLFAAFYEAGKVACCLCHGSSILRYA RLSTGEYLCKGKTVTGFANVEEDFGDHAVWDLGFLPRGKHLMPWRIEDELRTLGANYVQAGLWRGFAVRDGNLVTGQQNF SGMETAELVIRALGE
Specific function: Unknown
COG id: COG0693
COG function: function code R; Putative intracellular protease/amidase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Saccharomyces cerevisiae, GI6320742, Length=249, Percent_Identity=27.710843373494, Blast_Score=74, Evalue=2e-14,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 27964; Mature: 27833
Theoretical pI: Translated: 5.89; Mature: 5.89
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSLKDHNPVDAKTPKRVAIVLANPAISPTLGTPVGFWWSELTHPWFAFREKGYVVKLFSY CCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHCCHHHHHHCCCCEEEEEEC GGGKVEPDAMSDPEDPTGYSAGDLITQGFRHTPSLMALLENTKPVSAIRLEDFDAILIAG CCCEECCCCCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHCCCCCEEEEECCCCEEEEEC GQAPMVTMPDQTALHGLFAAFYEAGKVACCLCHGSSILRYARLSTGEYLCKGKTVTGFAN CCCCEEECCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHCCCCCEEECCCEEEEECC VEEDFGDHAVWDLGFLPRGKHLMPWRIEDELRTLGANYVQAGLWRGFAVRDGNLVTGQQN CHHHCCCCEEEEECCCCCCCCCCCEEEHHHHHHHCHHHHHHHHHCCEEEECCCEEECCCC FSGMETAELVIRALGE CCCCHHHHHHHHHHCC >Mature Secondary Structure SLKDHNPVDAKTPKRVAIVLANPAISPTLGTPVGFWWSELTHPWFAFREKGYVVKLFSY CCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHCCHHHHHHCCCCEEEEEEC GGGKVEPDAMSDPEDPTGYSAGDLITQGFRHTPSLMALLENTKPVSAIRLEDFDAILIAG CCCEECCCCCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHCCCCCEEEEECCCCEEEEEC GQAPMVTMPDQTALHGLFAAFYEAGKVACCLCHGSSILRYARLSTGEYLCKGKTVTGFAN CCCCEEECCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHCCCCCEEECCCEEEEECC VEEDFGDHAVWDLGFLPRGKHLMPWRIEDELRTLGANYVQAGLWRGFAVRDGNLVTGQQN CHHHCCCCEEEEECCCCCCCCCCCEEEHHHHHHHCHHHHHHHHHCCEEEECCCEEECCCC FSGMETAELVIRALGE CCCCHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA