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The map label for this gene is yiaD [C]

Identifier: 146339724

GI number: 146339724

Start: 2921785

End: 2923908

Strand: Reverse

Name: yiaD [C]

Synonym: BRADO2722

Alternate gene names: 146339724

Gene position: 2923908-2921785 (Counterclockwise)

Preceding gene: 146339725

Following gene: 146339723

Centisome position: 39.21

GC content: 69.49

Gene sequence:

>2124_bases
ATGCATCAACCATCAAAATGGTGGACGGGACTGATCGCCGTGGCCGTGCTCTGGCTGGCGGCCATCATCTTCAAGACGGC
GGGTGTCGAGGAGGAGATCGCCCCGCGTGCGCAGGCGGCGGTCGCGGCGACCGCACCTGATACCGCCGGAGCGCTCAAGG
TCTCGGTCGCCGGCCGCGACGTCCGCATCGAAGGTCCGGAGTTCAGCGCCGATCAATCGGATCGGCTGGATGATGCGGCG
ACGGTGGACGGCGTCCGGCTCGTCGACGGCACCTACGACAAGCTGCCGACACCCTCGCCCTATACTTTCCGCGCCGCACG
CAACGGCAGCCAGCTCGTGCTCGAGGGCGGCGTGCCGACACCCGCGGTTCGTCAGGCGGTCGTCAGCGCCGCCCGCGGCG
CCGTAGCCGGCGGCGAGGTCGTCGATCGGCTCGGCTATGCCCTGGGCGCGCCTGCGAATTTCGCCGCCATCGCCGGCCAC
GGCGTGGCGCAGGCGGCGAAGCTCAATGGCGGCACCTTCGCGCTCGCGGACAAGGCCTATTCGCTTGCCGGCGCCGCGAC
ATCGTCGGACATCTACGAGGCAGCGGTGGCTGCGACGCGGCAGTTGCCCGGCGGCGCCGTGCCCGACAAGGTGGCGATCC
TGCCGCCGGAAGCCAAGCCGTTCATCTGGACCGCGGTCCGCGACGCCAAGTCGGTGGTGATCTCCGGCGTCATTCCCAAT
GACGACATCAGGCGCGCGCTGCAGGCGGCCGCGAGCCAGGCATGGTCCGGATCGCCGGTGACGCAGCAGATGCAGATCGC
GCGTGGCGCGCCGGCGGGCGATTTCAACGCCTATACGACGTATGCGTTGGCGGAGCTGGCGCGGCTGACCACGGGCCGCG
TCGTCATCTCCGACGCCAGCTACACGATCACCGGCGAGGCGCCCTCCAGCGCCGCTTATGACGACGCCATCGCCGGCCTG
GGCAAGCTGCCTTCCGGCCTGACCTTGGCCAAGGCGGAGATCCTGCCGCCCGAGATCAAGCCCTACCGCTGGTCGGCGGA
GTTCAACGGCACCGCGCTCAGCCTCTCCGGCCTCGCGCCCGCCACGCCCGTCCGCGAGGCGATGCTGGGCTCCGCCAGCG
GGCCGTTCGACGGCAAGCCGATCAAGAGCGAGATCGGCATCGCGCGCGGCGCCCCGGAGGGTGATCTGACCAAGGTGAGC
GCGAGCCTTCTGACGGAGCTGTCCAGGCTCGCCCAGGGCCGCGCCGAGATCAACGACACCAAGGTGTCGATCACCGGCGT
CGGCCTTGCCAATGTCACCGGCGCCGCCGTGCGCGAGGCGCTGGCCTCTGCCCTGCCCGCGCCGTTCACGCTCGCCGCCG
TCGACGTCCGTGACGGTCCGATCTCGCCCTATGCGTTCGGTCTGCAGAAGCAGGACGGCCGCGTCAGGCTGAGCGGTTAC
GTGCCGGATGACGCCGCGCGCCGCGATCTCGTCGACGCCGCCACGGCGACCTTCGTCACCGAAACGGTGGAGGACGGCCT
GAAGACCGGCGCCGGCGCGCCGAAGGATTTCGTCACATCGCTCAAGGCGACATTCCCGGCGCTGGCGCGGCTGTGGTCGG
GAACGTTGTCGGCCAAGGATGCCGCGATTACCATCGAGGGTCAGGCGATCTACGAGAAGTCCGCCGAACAGGTCCGCAAG
GAGCTCGCCGACGCAGGCGGTGGCGACATCAAGCTCGCCGGCGTCACGATCGGGCTCAAGCCTGAAAGCCCGCCGCTTGC
CGTCGCCGAATGCCAGCCGGCATTCGAGGGCCTGCTCGCCAAGGGCCGCATCCGCTTCGCGACCGGCAGCGCCGAGCTCA
GCCGCGAGTCGCTGGCACTGCTCGACCACATCGTCGATGTGGCGCAGCGCTGCAAGGAGGCCGAGATCACGATCGAAGGC
CACACCGACAATGTCGGCAACGAAGCCGACAACATCGATCTCTCGAAGCGGCGGGCGGCCGCGGTCGTCAGCTACATCAG
CGAGGCCGGCATCGATACGTCGCGGATGTCCTCGGAAGGGTACGGCCAGAACCGGCCGGTCGCTTCCAACGACAGCGCGG
AAGGCCGCGCGCAGAACCGCCGCATCGAATTCGTCGTGAAGTGA

Upstream 100 bases:

>100_bases
GCTGGTCTCCGGAAGCGATTCTGATACGCTCGACGCGTGGTTCACGACAACGGTACGATCCGGCTGAACCGGGCGCAGGT
GGGGAAACGGGGGCTCTCAC

Downstream 100 bases:

>100_bases
GGCGCTGACATCATGATGTACGACCTGACGACGTTCTTCTTCTGGATCCTGCTCGCCGTGGTCATCGGCGGCTTCGTCGG
CTGGCGCACCTGGTCGGATG

Product: putative Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 707; Mature: 707

Protein sequence:

>707_residues
MHQPSKWWTGLIAVAVLWLAAIIFKTAGVEEEIAPRAQAAVAATAPDTAGALKVSVAGRDVRIEGPEFSADQSDRLDDAA
TVDGVRLVDGTYDKLPTPSPYTFRAARNGSQLVLEGGVPTPAVRQAVVSAARGAVAGGEVVDRLGYALGAPANFAAIAGH
GVAQAAKLNGGTFALADKAYSLAGAATSSDIYEAAVAATRQLPGGAVPDKVAILPPEAKPFIWTAVRDAKSVVISGVIPN
DDIRRALQAAASQAWSGSPVTQQMQIARGAPAGDFNAYTTYALAELARLTTGRVVISDASYTITGEAPSSAAYDDAIAGL
GKLPSGLTLAKAEILPPEIKPYRWSAEFNGTALSLSGLAPATPVREAMLGSASGPFDGKPIKSEIGIARGAPEGDLTKVS
ASLLTELSRLAQGRAEINDTKVSITGVGLANVTGAAVREALASALPAPFTLAAVDVRDGPISPYAFGLQKQDGRVRLSGY
VPDDAARRDLVDAATATFVTETVEDGLKTGAGAPKDFVTSLKATFPALARLWSGTLSAKDAAITIEGQAIYEKSAEQVRK
ELADAGGGDIKLAGVTIGLKPESPPLAVAECQPAFEGLLAKGRIRFATGSAELSRESLALLDHIVDVAQRCKEAEITIEG
HTDNVGNEADNIDLSKRRAAAVVSYISEAGIDTSRMSSEGYGQNRPVASNDSAEGRAQNRRIEFVVK

Sequences:

>Translated_707_residues
MHQPSKWWTGLIAVAVLWLAAIIFKTAGVEEEIAPRAQAAVAATAPDTAGALKVSVAGRDVRIEGPEFSADQSDRLDDAA
TVDGVRLVDGTYDKLPTPSPYTFRAARNGSQLVLEGGVPTPAVRQAVVSAARGAVAGGEVVDRLGYALGAPANFAAIAGH
GVAQAAKLNGGTFALADKAYSLAGAATSSDIYEAAVAATRQLPGGAVPDKVAILPPEAKPFIWTAVRDAKSVVISGVIPN
DDIRRALQAAASQAWSGSPVTQQMQIARGAPAGDFNAYTTYALAELARLTTGRVVISDASYTITGEAPSSAAYDDAIAGL
GKLPSGLTLAKAEILPPEIKPYRWSAEFNGTALSLSGLAPATPVREAMLGSASGPFDGKPIKSEIGIARGAPEGDLTKVS
ASLLTELSRLAQGRAEINDTKVSITGVGLANVTGAAVREALASALPAPFTLAAVDVRDGPISPYAFGLQKQDGRVRLSGY
VPDDAARRDLVDAATATFVTETVEDGLKTGAGAPKDFVTSLKATFPALARLWSGTLSAKDAAITIEGQAIYEKSAEQVRK
ELADAGGGDIKLAGVTIGLKPESPPLAVAECQPAFEGLLAKGRIRFATGSAELSRESLALLDHIVDVAQRCKEAEITIEG
HTDNVGNEADNIDLSKRRAAAVVSYISEAGIDTSRMSSEGYGQNRPVASNDSAEGRAQNRRIEFVVK
>Mature_707_residues
MHQPSKWWTGLIAVAVLWLAAIIFKTAGVEEEIAPRAQAAVAATAPDTAGALKVSVAGRDVRIEGPEFSADQSDRLDDAA
TVDGVRLVDGTYDKLPTPSPYTFRAARNGSQLVLEGGVPTPAVRQAVVSAARGAVAGGEVVDRLGYALGAPANFAAIAGH
GVAQAAKLNGGTFALADKAYSLAGAATSSDIYEAAVAATRQLPGGAVPDKVAILPPEAKPFIWTAVRDAKSVVISGVIPN
DDIRRALQAAASQAWSGSPVTQQMQIARGAPAGDFNAYTTYALAELARLTTGRVVISDASYTITGEAPSSAAYDDAIAGL
GKLPSGLTLAKAEILPPEIKPYRWSAEFNGTALSLSGLAPATPVREAMLGSASGPFDGKPIKSEIGIARGAPEGDLTKVS
ASLLTELSRLAQGRAEINDTKVSITGVGLANVTGAAVREALASALPAPFTLAAVDVRDGPISPYAFGLQKQDGRVRLSGY
VPDDAARRDLVDAATATFVTETVEDGLKTGAGAPKDFVTSLKATFPALARLWSGTLSAKDAAITIEGQAIYEKSAEQVRK
ELADAGGGDIKLAGVTIGLKPESPPLAVAECQPAFEGLLAKGRIRFATGSAELSRESLALLDHIVDVAQRCKEAEITIEG
HTDNVGNEADNIDLSKRRAAAVVSYISEAGIDTSRMSSEGYGQNRPVASNDSAEGRAQNRRIEFVVK

Specific function: Unknown

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

Organism=Escherichia coli, GI48994946, Length=103, Percent_Identity=34.9514563106796, Blast_Score=69, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001035
- InterPro:   IPR006664
- InterPro:   IPR006690
- InterPro:   IPR006665
- InterPro:   IPR007055 [H]

Pfam domain/function: PF04972 BON; PF00691 OmpA [H]

EC number: NA

Molecular weight: Translated: 73040; Mature: 73040

Theoretical pI: Translated: 5.02; Mature: 5.02

Prosite motif: PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
0.8 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
0.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHQPSKWWTGLIAVAVLWLAAIIFKTAGVEEEIAPRAQAAVAATAPDTAGALKVSVAGRD
CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCHHHHEEEECCCCCCCEEEEEECCCE
VRIEGPEFSADQSDRLDDAATVDGVRLVDGTYDKLPTPSPYTFRAARNGSQLVLEGGVPT
EEEECCCCCCCCCCCCCCHHCCCCEEEECCCHHCCCCCCCEEEEECCCCCEEEEECCCCC
PAVRQAVVSAARGAVAGGEVVDRLGYALGAPANFAAIAGHGVAQAAKLNGGTFALADKAY
HHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCHHECCCCHHHHEECCCCEEEEEHHHH
SLAGAATSSDIYEAAVAATRQLPGGAVPDKVAILPPEAKPFIWTAVRDAKSVVISGVIPN
HHHCCCCCHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCEEEEEHHCCCEEEEECCCCC
DDIRRALQAAASQAWSGSPVTQQMQIARGAPAGDFNAYTTYALAELARLTTGRVVISDAS
HHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCC
YTITGEAPSSAAYDDAIAGLGKLPSGLTLAKAEILPPEIKPYRWSAEFNGTALSLSGLAP
EEEECCCCCCCHHHHHHHHHCCCCCCCEEEEHHCCCCCCCCEEECCCCCCCEEEECCCCC
ATPVREAMLGSASGPFDGKPIKSEIGIARGAPEGDLTKVSASLLTELSRLAQGRAEINDT
CCHHHHHHHCCCCCCCCCCCCHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCC
KVSITGVGLANVTGAAVREALASALPAPFTLAAVDVRDGPISPYAFGLQKQDGRVRLSGY
EEEEEECCHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCEECCCCCCCEEEEEEC
VPDDAARRDLVDAATATFVTETVEDGLKTGAGAPKDFVTSLKATFPALARLWSGTLSAKD
CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCC
AAITIEGQAIYEKSAEQVRKELADAGGGDIKLAGVTIGLKPESPPLAVAECQPAFEGLLA
EEEEEECHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCCCCEEHHHCCHHHHHHHH
KGRIRFATGSAELSRESLALLDHIVDVAQRCKEAEITIEGHTDNVGNEADNIDLSKRRAA
CCEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCHHHHHHH
AVVSYISEAGIDTSRMSSEGYGQNRPVASNDSAEGRAQNRRIEFVVK
HHHHHHHHCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEC
>Mature Secondary Structure
MHQPSKWWTGLIAVAVLWLAAIIFKTAGVEEEIAPRAQAAVAATAPDTAGALKVSVAGRD
CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCHHHHEEEECCCCCCCEEEEEECCCE
VRIEGPEFSADQSDRLDDAATVDGVRLVDGTYDKLPTPSPYTFRAARNGSQLVLEGGVPT
EEEECCCCCCCCCCCCCCHHCCCCEEEECCCHHCCCCCCCEEEEECCCCCEEEEECCCCC
PAVRQAVVSAARGAVAGGEVVDRLGYALGAPANFAAIAGHGVAQAAKLNGGTFALADKAY
HHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCHHECCCCHHHHEECCCCEEEEEHHHH
SLAGAATSSDIYEAAVAATRQLPGGAVPDKVAILPPEAKPFIWTAVRDAKSVVISGVIPN
HHHCCCCCHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCEEEEEHHCCCEEEEECCCCC
DDIRRALQAAASQAWSGSPVTQQMQIARGAPAGDFNAYTTYALAELARLTTGRVVISDAS
HHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCC
YTITGEAPSSAAYDDAIAGLGKLPSGLTLAKAEILPPEIKPYRWSAEFNGTALSLSGLAP
EEEECCCCCCCHHHHHHHHHCCCCCCCEEEEHHCCCCCCCCEEECCCCCCCEEEECCCCC
ATPVREAMLGSASGPFDGKPIKSEIGIARGAPEGDLTKVSASLLTELSRLAQGRAEINDT
CCHHHHHHHCCCCCCCCCCCCHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCC
KVSITGVGLANVTGAAVREALASALPAPFTLAAVDVRDGPISPYAFGLQKQDGRVRLSGY
EEEEEECCHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCEECCCCCCCEEEEEEC
VPDDAARRDLVDAATATFVTETVEDGLKTGAGAPKDFVTSLKATFPALARLWSGTLSAKD
CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCC
AAITIEGQAIYEKSAEQVRKELADAGGGDIKLAGVTIGLKPESPPLAVAECQPAFEGLLA
EEEEEECHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCCCCEEHHHCCHHHHHHHH
KGRIRFATGSAELSRESLALLDHIVDVAQRCKEAEITIEGHTDNVGNEADNIDLSKRRAA
CCEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCHHHHHHH
AVVSYISEAGIDTSRMSSEGYGQNRPVASNDSAEGRAQNRRIEFVVK
HHHHHHHHCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]