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The map label for this gene is rplU [H]

Identifier: 146339723

GI number: 146339723

Start: 2920063

End: 2921772

Strand: Reverse

Name: rplU [H]

Synonym: BRADO2721

Alternate gene names: 146339723

Gene position: 2921772-2920063 (Counterclockwise)

Preceding gene: 146339724

Following gene: 146339720

Centisome position: 39.18

GC content: 71.23

Gene sequence:

>1710_bases
ATGATGTACGACCTGACGACGTTCTTCTTCTGGATCCTGCTCGCCGTGGTCATCGGCGGCTTCGTCGGCTGGCGCACCTG
GTCGGATGAAAAGCAGCCGGACTGGATGCGGAGCTGGCTGCTGCCGGCGATTCTCGCCTTCCTCATCGGCTCGCTGATGG
CGATGCTGAGCGTGCTGCCGGGCCGCGCCGGGCTGTGGCTGGAGGTCGCGCTGCTGATGGTCGGCGGTTATGTAGTCGGC
TGCCTGGTCGGCGGACAGCTGAAGGACTATGTCGGGATCGGCGACTCCAGCGCCATGTCCCCGGGCGGCCCCGGCGGCAC
GGTGGCGTTCACCGCGCCCGCCCGCCCCTGGGCGGACAGCCCGTCGCCCGCCGCGCAGGCCGCGGCCCAAGTCGAGGCCG
ACAGACTGGCCGCGGAGGCTGCCGCGCAGGCGGAGGCGGATCGTGTTGCAGCCGAAGCTGCCGCGAAGGCCGAGGCCGAT
CGTCTCGCTAACGAGGCGGCTGCGAAGGCGGAGGCGGATCATCTCGCTGCCGAGGCCGCCGCGAAGGCGGAGGCTGATCG
TCTCGCTGCCGAGGCCGCTGCGAAGGCGGAGGCTGATCATCTCGCTGCCGAGGCCGCCGCGAAGGCGGAGGCTGATCGTC
TCGCTGCCGAGGCCGCTGCGAAGGCGGAGGCCGAGCGCCTCGCTGCCGAGGCTGCTGCGAAAGCGGAGGCCGAGCGCCTT
GCCGCCGAAGCGGCCGCAAAGGCGGAAGCCGAACGTGTTGCGGCCGAGGCTGTCGCGAAAGCCGAAGCGGAGGCCGCGCA
GCTTGCCGCCGAGGCCGCGGCCAGGGCCGAAGCCGAGCGCGTCGCCGCTGACGCGGCGGCCAAGGCGGAGGCCGAACGTC
TGGCGGCGGACGCCGCGGCGAGCGCGGAGGCCGATCGCCTCGCCGCCGAGGTCGCGGCCTCGGCCGCCGAGCCTGCGCCG
ATCAGCAGCAACGGTGCCGACGATGGCCGTCCGCCGGCCCTGCCCGCGCCCGACGGCACCGCAGACGATCTCAAGCTGAT
CAAGGGCGTCGGGCCGAAGAACGAGCGCGTCCTCAACGACATCGGCGTGCATCATTTCAGCCAGATCGCCGACTGGTCGC
CGGCGCATGCCGAATGGGTCGGTCATCACATGGCCTTTCCCGGCCGCATCGAGCGCGAGCACTGGATCGCGCAGGCCAAG
CTGCTCGCTGCCGGCCTCGACACCGCGCATTCGACCGCGGTGAAGTCCGGCGCGATCACCATCGACGACCAGGCCGACGC
GCCGCTGACCGAGGAGGAGGCCAGCTACCTCCTCTCCCACCTGCCGGCTCTGATGCCGCCCGTCGAGAACGAGGGCGCCC
ATGCCGGCAACCGGCCGCTCGGACTCGCCGCGCCTCGCGGCGGACAGGCCGACGATCTCAAGCTGATCAAGGGCATCGGA
AAGCAGAACGAGGCGCGGCTGCATGGCCTCGGCATCTGGCACTTCGATCAGATCGCGGCCTGGACGGCCGAGCACGCCAA
ATGGGTCGGCTCCTATCTCGCCTTCGCCGGCCGCATCGAGCGCGAGCAATGGATCAGCCAGGCCAGGGAGCTCGCGAGCG
GCGGCACGACGGAGTTCGCCAAACGCGTCGAGGCCGGTCTGGTGAAGTCATCGCTCGACGACGGCTCGCGCGGCCAGGAC
AACGTCGAGATCGTCCAGCCGCGGGATTAG

Upstream 100 bases:

>100_bases
AGGGTACGGCCAGAACCGGCCGGTCGCTTCCAACGACAGCGCGGAAGGCCGCGCGCAGAACCGCCGCATCGAATTCGTCG
TGAAGTGAGGCGCTGACATC

Downstream 100 bases:

>100_bases
CAGGTCGGCTCGGCAAAGCCCTGGTCTGGCGCTGCCAGATGCAGTTCGTAGAGTGGGCAAAGGCGCTGACGGGCGCTCTC
ATCACGCGCGATCGCAGCGG

Product: TolA family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 569; Mature: 569

Protein sequence:

>569_residues
MMYDLTTFFFWILLAVVIGGFVGWRTWSDEKQPDWMRSWLLPAILAFLIGSLMAMLSVLPGRAGLWLEVALLMVGGYVVG
CLVGGQLKDYVGIGDSSAMSPGGPGGTVAFTAPARPWADSPSPAAQAAAQVEADRLAAEAAAQAEADRVAAEAAAKAEAD
RLANEAAAKAEADHLAAEAAAKAEADRLAAEAAAKAEADHLAAEAAAKAEADRLAAEAAAKAEAERLAAEAAAKAEAERL
AAEAAAKAEAERVAAEAVAKAEAEAAQLAAEAAARAEAERVAADAAAKAEAERLAADAAASAEADRLAAEVAASAAEPAP
ISSNGADDGRPPALPAPDGTADDLKLIKGVGPKNERVLNDIGVHHFSQIADWSPAHAEWVGHHMAFPGRIEREHWIAQAK
LLAAGLDTAHSTAVKSGAITIDDQADAPLTEEEASYLLSHLPALMPPVENEGAHAGNRPLGLAAPRGGQADDLKLIKGIG
KQNEARLHGLGIWHFDQIAAWTAEHAKWVGSYLAFAGRIEREQWISQARELASGGTTEFAKRVEAGLVKSSLDDGSRGQD
NVEIVQPRD

Sequences:

>Translated_569_residues
MMYDLTTFFFWILLAVVIGGFVGWRTWSDEKQPDWMRSWLLPAILAFLIGSLMAMLSVLPGRAGLWLEVALLMVGGYVVG
CLVGGQLKDYVGIGDSSAMSPGGPGGTVAFTAPARPWADSPSPAAQAAAQVEADRLAAEAAAQAEADRVAAEAAAKAEAD
RLANEAAAKAEADHLAAEAAAKAEADRLAAEAAAKAEADHLAAEAAAKAEADRLAAEAAAKAEAERLAAEAAAKAEAERL
AAEAAAKAEAERVAAEAVAKAEAEAAQLAAEAAARAEAERVAADAAAKAEAERLAADAAASAEADRLAAEVAASAAEPAP
ISSNGADDGRPPALPAPDGTADDLKLIKGVGPKNERVLNDIGVHHFSQIADWSPAHAEWVGHHMAFPGRIEREHWIAQAK
LLAAGLDTAHSTAVKSGAITIDDQADAPLTEEEASYLLSHLPALMPPVENEGAHAGNRPLGLAAPRGGQADDLKLIKGIG
KQNEARLHGLGIWHFDQIAAWTAEHAKWVGSYLAFAGRIEREQWISQARELASGGTTEFAKRVEAGLVKSSLDDGSRGQD
NVEIVQPRD
>Mature_569_residues
MMYDLTTFFFWILLAVVIGGFVGWRTWSDEKQPDWMRSWLLPAILAFLIGSLMAMLSVLPGRAGLWLEVALLMVGGYVVG
CLVGGQLKDYVGIGDSSAMSPGGPGGTVAFTAPARPWADSPSPAAQAAAQVEADRLAAEAAAQAEADRVAAEAAAKAEAD
RLANEAAAKAEADHLAAEAAAKAEADRLAAEAAAKAEADHLAAEAAAKAEADRLAAEAAAKAEAERLAAEAAAKAEAERL
AAEAAAKAEAERVAAEAVAKAEAEAAQLAAEAAARAEAERVAADAAAKAEAERLAADAAASAEADRLAAEVAASAAEPAP
ISSNGADDGRPPALPAPDGTADDLKLIKGVGPKNERVLNDIGVHHFSQIADWSPAHAEWVGHHMAFPGRIEREHWIAQAK
LLAAGLDTAHSTAVKSGAITIDDQADAPLTEEEASYLLSHLPALMPPVENEGAHAGNRPLGLAAPRGGQADDLKLIKGIG
KQNEARLHGLGIWHFDQIAAWTAEHAKWVGSYLAFAGRIEREQWISQARELASGGTTEFAKRVEAGLVKSSLDDGSRGQD
NVEIVQPRD

Specific function: This protein binds to 23S rRNA in the presence of protein L20 [H]

COG id: COG3743

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein L21P family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001787 [H]

Pfam domain/function: PF00829 Ribosomal_L21p [H]

EC number: NA

Molecular weight: Translated: 58949; Mature: 58949

Theoretical pI: Translated: 4.54; Mature: 4.54

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHCCCCCCCCCCCCEEECCCC
>Mature Secondary Structure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HHHHHHHHHHCCCCCCCCCCCCEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA