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The map label for this gene is sigK [H]

Identifier: 146339617

GI number: 146339617

Start: 2799261

End: 2799860

Strand: Reverse

Name: sigK [H]

Synonym: BRADO2609

Alternate gene names: 146339617

Gene position: 2799860-2799261 (Counterclockwise)

Preceding gene: 146339618

Following gene: 146339616

Centisome position: 37.55

GC content: 67.17

Gene sequence:

>600_bases
ATGCGATCAGGACGCGCGGATCAGAAGAGCTACATCGCGCATCTCAGCGGCCTTCTGGCGCGCGCCGGACGCAATGACCA
GCACGCATTTGCAGAGCTCTACGCCGCAACCATCGTGAAGATGCGCAAGACGATCCGCGTCCTGCTGCCCTCCTCGGCCG
ACCTCGACGATATCCTGCAAGACGGCTACGTGAAGATCTGGCGTCATGCCGCGAGCTTCGATCCGACGCGCGCCTCGCCC
ATCACATGGATGTGCACCATCATGCGCAACACCGCGATCGACAGCCTGCGCGCCACCGGCGTACCGACCTCGGAGCTCGA
CGAGGCGCTCTCGATCGCCGATCCCGCCGCCACGGCGACGGAGGACGAGTTCGACTACGCGCAGGCGGAACCGATCGCGC
GCGAGGCGCTTGAACGCCTGCCGGAAGAACGCCGGCGTCTGCTCGCGCTCGCCTATCTCGAGGGCGAAAGCCGGACGCGG
CTGTCGGAGCGGTTCGGCGTACCCGTCGGCACCATCAAGACCTGGCTGCATCGCAGCCTCGTCGCGGTACGCAAGGAATG
CCTCGGCCGCGTCGGAGCCATGACCGCGGCGGCGGCCTGA

Upstream 100 bases:

>100_bases
CGATCAGCCAGTTGCGTCCCTCGTGTGACGGCCGCAGTCTGGCGGTGATCCGCGTCATCCCCTGTCCCGTTTCGAGTGAG
GAAGCGGATGGAGGAAGAGG

Downstream 100 bases:

>100_bases
TTTGCAGCGGGACATGATGACGAAAGCAAAGGCCGTCAGACATCTCGTCGTCGTGCTGGGCGACCAGCTCGATGCCGATT
CGGCTGCGTTCGACGGTTTC

Product: putative RNA polymerase sigma factor

Products: NA

Alternate protein names: Sigma-K factor [H]

Number of amino acids: Translated: 199; Mature: 199

Protein sequence:

>199_residues
MRSGRADQKSYIAHLSGLLARAGRNDQHAFAELYAATIVKMRKTIRVLLPSSADLDDILQDGYVKIWRHAASFDPTRASP
ITWMCTIMRNTAIDSLRATGVPTSELDEALSIADPAATATEDEFDYAQAEPIAREALERLPEERRRLLALAYLEGESRTR
LSERFGVPVGTIKTWLHRSLVAVRKECLGRVGAMTAAAA

Sequences:

>Translated_199_residues
MRSGRADQKSYIAHLSGLLARAGRNDQHAFAELYAATIVKMRKTIRVLLPSSADLDDILQDGYVKIWRHAASFDPTRASP
ITWMCTIMRNTAIDSLRATGVPTSELDEALSIADPAATATEDEFDYAQAEPIAREALERLPEERRRLLALAYLEGESRTR
LSERFGVPVGTIKTWLHRSLVAVRKECLGRVGAMTAAAA
>Mature_199_residues
MRSGRADQKSYIAHLSGLLARAGRNDQHAFAELYAATIVKMRKTIRVLLPSSADLDDILQDGYVKIWRHAASFDPTRASP
ITWMCTIMRNTAIDSLRATGVPTSELDEALSIADPAATATEDEFDYAQAEPIAREALERLPEERRRLLALAYLEGESRTR
LSERFGVPVGTIKTWLHRSLVAVRKECLGRVGAMTAAAA

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released [H]

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR007627
- InterPro:   IPR007630
- InterPro:   IPR013325
- InterPro:   IPR013324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF04545 Sigma70_r4 [H]

EC number: NA

Molecular weight: Translated: 21982; Mature: 21982

Theoretical pI: Translated: 8.23; Mature: 8.23

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRSGRADQKSYIAHLSGLLARAGRNDQHAFAELYAATIVKMRKTIRVLLPSSADLDDILQ
CCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
DGYVKIWRHAASFDPTRASPITWMCTIMRNTAIDSLRATGVPTSELDEALSIADPAATAT
HHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCC
EDEFDYAQAEPIAREALERLPEERRRLLALAYLEGESRTRLSERFGVPVGTIKTWLHRSL
CCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHH
VAVRKECLGRVGAMTAAAA
HHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MRSGRADQKSYIAHLSGLLARAGRNDQHAFAELYAATIVKMRKTIRVLLPSSADLDDILQ
CCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
DGYVKIWRHAASFDPTRASPITWMCTIMRNTAIDSLRATGVPTSELDEALSIADPAATAT
HHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCC
EDEFDYAQAEPIAREALERLPEERRRLLALAYLEGESRTRLSERFGVPVGTIKTWLHRSL
CCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHH
VAVRKECLGRVGAMTAAAA
HHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA