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The map label for this gene is cycM [H]

Identifier: 146338105

GI number: 146338105

Start: 1066477

End: 1067025

Strand: Direct

Name: cycM [H]

Synonym: BRADO1001

Alternate gene names: 146338105

Gene position: 1066477-1067025 (Clockwise)

Preceding gene: 146338102

Following gene: 146338106

Centisome position: 14.3

GC content: 65.94

Gene sequence:

>549_bases
ATGGACTCCTTCGAACTGAACAAAATCCTCGGCGCCGTGCTGGCCGCCTGTCTGGTCGTGCTGGTCACGAGCTTTTCCGC
CAACGCGATCTTCGCGCCGAAGATGCCGGAAAAGCCGGGTTTCGAGATCGCCGTGAAGGAGGCCGAAGGCGCAAGCAAGG
AAGCCGCTGCGCCGGCCTCCGCCGAGCCGATCGAGAAGCTGCTGCAGACCGCCTCCGTCGAGAAGGGCGCCGCCGCCGCC
AAGAAGTGCGCAGCCTGCCACACCTTTGCGAAGGGCGAGAAGAACGGCGTCGGCCCGAACCTCTGGGGCGTGGTCGGCGA
CAAGATCGGCGAGGGCCGCGGCTTCAACTGGTCGCAGGCGATCAAGGCCAAGGGCGGCACCTGGACGATCGAAGAGCTGA
ACAAGTTCATCACCAACCCCAAGGGGTACATCCCGGGCACCGCCATGGGCTTCGCCGGCATCCAGAAGGACTCGGAGCGC
GCCGACGTGCTGGCCTATCTGAACTCGCTCTCGGACAACCCGGCCCCGCTGCCGACCGCAGCCAAGTGA

Upstream 100 bases:

>100_bases
CGATTCCGCTCGATGCCTTCATGAAGTCCTTGAGGCGATTCACGGCCGCGGCCCCGCGGCCTCAAAGCAATGAAATCCGC
CCTCGGAGCCTGATTCCAAA

Downstream 100 bases:

>100_bases
GCCCCGGCTCAGCTCTGATTTTGGACGGCCGGGCCCCAAGCCCGGCCGTTTTGCTATCCGAGGCGAATTTCGCCGCATTT
GGGACCTTTGGTCGCATCCA

Product: cytochrome c-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 182; Mature: 182

Protein sequence:

>182_residues
MDSFELNKILGAVLAACLVVLVTSFSANAIFAPKMPEKPGFEIAVKEAEGASKEAAAPASAEPIEKLLQTASVEKGAAAA
KKCAACHTFAKGEKNGVGPNLWGVVGDKIGEGRGFNWSQAIKAKGGTWTIEELNKFITNPKGYIPGTAMGFAGIQKDSER
ADVLAYLNSLSDNPAPLPTAAK

Sequences:

>Translated_182_residues
MDSFELNKILGAVLAACLVVLVTSFSANAIFAPKMPEKPGFEIAVKEAEGASKEAAAPASAEPIEKLLQTASVEKGAAAA
KKCAACHTFAKGEKNGVGPNLWGVVGDKIGEGRGFNWSQAIKAKGGTWTIEELNKFITNPKGYIPGTAMGFAGIQKDSER
ADVLAYLNSLSDNPAPLPTAAK
>Mature_182_residues
MDSFELNKILGAVLAACLVVLVTSFSANAIFAPKMPEKPGFEIAVKEAEGASKEAAAPASAEPIEKLLQTASVEKGAAAA
KKCAACHTFAKGEKNGVGPNLWGVVGDKIGEGRGFNWSQAIKAKGGTWTIEELNKFITNPKGYIPGTAMGFAGIQKDSER
ADVLAYLNSLSDNPAPLPTAAK

Specific function: May be involved in electron transfer from bc1 complex to aa3 [H]

COG id: COG3474

COG function: function code C; Cytochrome c2

Gene ontology:

Cell location: Cell membrane; Single-pass type II membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome c family [H]

Homologues:

Organism=Homo sapiens, GI11128019, Length=103, Percent_Identity=45.6310679611651, Blast_Score=94, Evalue=7e-20,
Organism=Caenorhabditis elegans, GI17539604, Length=95, Percent_Identity=45.2631578947368, Blast_Score=83, Evalue=8e-17,
Organism=Caenorhabditis elegans, GI17566554, Length=95, Percent_Identity=41.0526315789474, Blast_Score=75, Evalue=2e-14,
Organism=Saccharomyces cerevisiae, GI6320796, Length=101, Percent_Identity=39.6039603960396, Blast_Score=90, Evalue=3e-19,
Organism=Saccharomyces cerevisiae, GI6322508, Length=101, Percent_Identity=39.6039603960396, Blast_Score=87, Evalue=1e-18,
Organism=Drosophila melanogaster, GI17137228, Length=99, Percent_Identity=50.5050505050505, Blast_Score=101, Evalue=3e-22,
Organism=Drosophila melanogaster, GI17137204, Length=89, Percent_Identity=51.685393258427, Blast_Score=96, Evalue=1e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002327
- InterPro:   IPR009056
- InterPro:   IPR003088 [H]

Pfam domain/function: PF00034 Cytochrom_C [H]

EC number: NA

Molecular weight: Translated: 18907; Mature: 18907

Theoretical pI: Translated: 8.04; Mature: 8.04

Prosite motif: PS51007 CYTC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDSFELNKILGAVLAACLVVLVTSFSANAIFAPKMPEKPGFEIAVKEAEGASKEAAAPAS
CCCHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCEEEEECCCCCCCHHCCCCC
AEPIEKLLQTASVEKGAAAAKKCAACHTFAKGEKNGVGPNLWGVVGDKIGEGRGFNWSQA
HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCCCHHHH
IKAKGGTWTIEELNKFITNPKGYIPGTAMGFAGIQKDSERADVLAYLNSLSDNPAPLPTA
HHCCCCEEEHHHHHHHHCCCCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCC
AK
CC
>Mature Secondary Structure
MDSFELNKILGAVLAACLVVLVTSFSANAIFAPKMPEKPGFEIAVKEAEGASKEAAAPAS
CCCHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCEEEEECCCCCCCHHCCCCC
AEPIEKLLQTASVEKGAAAAKKCAACHTFAKGEKNGVGPNLWGVVGDKIGEGRGFNWSQA
HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCCCHHHH
IKAKGGTWTIEELNKFITNPKGYIPGTAMGFAGIQKDSERADVLAYLNSLSDNPAPLPTA
HHCCCCEEEHHHHHHHHCCCCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCC
AK
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1657867; 12597275 [H]