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The map label for this gene is yhjC [H]

Identifier: 146338102

GI number: 146338102

Start: 1063605

End: 1064507

Strand: Direct

Name: yhjC [H]

Synonym: BRADO0998

Alternate gene names: 146338102

Gene position: 1063605-1064507 (Clockwise)

Preceding gene: 146338100

Following gene: 146338105

Centisome position: 14.26

GC content: 70.76

Gene sequence:

>903_bases
TTGGTGGAACAGATGGATTTGCTGGCGCTCGCCGATTTCACCCTCGTCGCCCGTTACGGCGGCTTCGGCCGCGCCGCGCG
GGCCAGCGGTCGTCCGAAGGCGACGCTGTCCCGCCGGGTCGCGGAGCTTGAGGCGAGCCTGGACATCCGGCTGATCGAGC
GCGGCGGACGCGCGCTGAAGCTGACCGAGGAGGGGCGGGCGCTGTTCGAGCGCACGGGCGCGCTGCTGACCGAGCTCGAC
GAGACCGTCGGCGCGATCGCATCAGGCGGCCAGACGCCGCGCGGCCGTTTGCGCATCAGCGCGCCGCTGCTGTTCTCGCA
GACCGCGATGGGCAAGCTCGCCGCGTCATTCGCGCTTCGCTACCCCGAGGTGCGGCTCGATGTGACCACGGATGACCGCA
CCGTCGACATGGTCGAGGAGGGCTATGACCTGGTGATCCGGGTCAATCCCGCTCCCGACGACAGCCTGATCGGACGCATC
TTCCTGCGCGACCGGATGGTGGTTGTCGCTCACCCCGCGCTCGCCCGCCCGGACGACGCAACGTCCGTCCGCGCCATCGT
TCGCAGCAGTGACCAGATCACGAGCTGGGCCGTGACGGGACCGGCAGGGCCGGCGCGAATCTCCGTCGAGCCGATCCTGC
GCCTGACCTCGCTGATCATGGTGCGCGATGCCGTCCGCGCCGGCGTCGGCGCGGCCTGCCTGCCGCTCTCGCTCGCCAGC
CACGACCTCGCCGCCGGCCGCCTCGTGCACTGGGCCGATGTCGACGCCCCGCCGGTGGCGCTGTGGACGCTGTATCCATC
GCGCCGGCTGCTGAGCCCGCGCGTCTCCGCCTTCCTCGATCATCTCAAGGATGCCTTCCCGACGGGAACGTCAGCCGAGC
TCGCCGCCTATGTCGAAGGGTAG

Upstream 100 bases:

>100_bases
GCCCGTGTTGGCGGTCCGAGCGCAGGTGCAAGTGATCAGACCTGGGAAATAGCGATCCACATGCGAGCCGACAGGCGCTA
GGATTGGACAGCTTGTCTCA

Downstream 100 bases:

>100_bases
GTGCCCGCGTCATGGGACCCATACCGCGTGATGTCGCGGCGAGACGACGGTGGGAGAGACCGTCGCATAACCACTCGGCG
CTGCGGCTATGAGTGGCGAC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 300; Mature: 300

Protein sequence:

>300_residues
MVEQMDLLALADFTLVARYGGFGRAARASGRPKATLSRRVAELEASLDIRLIERGGRALKLTEEGRALFERTGALLTELD
ETVGAIASGGQTPRGRLRISAPLLFSQTAMGKLAASFALRYPEVRLDVTTDDRTVDMVEEGYDLVIRVNPAPDDSLIGRI
FLRDRMVVVAHPALARPDDATSVRAIVRSSDQITSWAVTGPAGPARISVEPILRLTSLIMVRDAVRAGVGAACLPLSLAS
HDLAAGRLVHWADVDAPPVALWTLYPSRRLLSPRVSAFLDHLKDAFPTGTSAELAAYVEG

Sequences:

>Translated_300_residues
MVEQMDLLALADFTLVARYGGFGRAARASGRPKATLSRRVAELEASLDIRLIERGGRALKLTEEGRALFERTGALLTELD
ETVGAIASGGQTPRGRLRISAPLLFSQTAMGKLAASFALRYPEVRLDVTTDDRTVDMVEEGYDLVIRVNPAPDDSLIGRI
FLRDRMVVVAHPALARPDDATSVRAIVRSSDQITSWAVTGPAGPARISVEPILRLTSLIMVRDAVRAGVGAACLPLSLAS
HDLAAGRLVHWADVDAPPVALWTLYPSRRLLSPRVSAFLDHLKDAFPTGTSAELAAYVEG
>Mature_300_residues
MVEQMDLLALADFTLVARYGGFGRAARASGRPKATLSRRVAELEASLDIRLIERGGRALKLTEEGRALFERTGALLTELD
ETVGAIASGGQTPRGRLRISAPLLFSQTAMGKLAASFALRYPEVRLDVTTDDRTVDMVEEGYDLVIRVNPAPDDSLIGRI
FLRDRMVVVAHPALARPDDATSVRAIVRSSDQITSWAVTGPAGPARISVEPILRLTSLIMVRDAVRAGVGAACLPLSLAS
HDLAAGRLVHWADVDAPPVALWTLYPSRRLLSPRVSAFLDHLKDAFPTGTSAELAAYVEG

Specific function: Unknown

COG id: COG0583

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693193, Length=286, Percent_Identity=31.8181818181818, Blast_Score=115, Evalue=5e-27,
Organism=Escherichia coli, GI1786401, Length=295, Percent_Identity=29.1525423728814, Blast_Score=108, Evalue=4e-25,
Organism=Escherichia coli, GI87081978, Length=283, Percent_Identity=28.2685512367491, Blast_Score=107, Evalue=1e-24,
Organism=Escherichia coli, GI1787128, Length=294, Percent_Identity=27.891156462585, Blast_Score=90, Evalue=1e-19,
Organism=Escherichia coli, GI1789639, Length=288, Percent_Identity=26.0416666666667, Blast_Score=89, Evalue=4e-19,
Organism=Escherichia coli, GI1787589, Length=293, Percent_Identity=25.938566552901, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI1789440, Length=157, Percent_Identity=26.7515923566879, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI87082132, Length=294, Percent_Identity=22.7891156462585, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI1788706, Length=176, Percent_Identity=25.5681818181818, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI157672245, Length=244, Percent_Identity=27.0491803278689, Blast_Score=67, Evalue=1e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32274; Mature: 32274

Theoretical pI: Translated: 7.67; Mature: 7.67

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVEQMDLLALADFTLVARYGGFGRAARASGRPKATLSRRVAELEASLDIRLIERGGRALK
CCCCHHHHHHHHHHHHHHCCCCCCHHCCCCCCHHHHHHHHHHHHHCCEEEEEECCCCEEE
LTEEGRALFERTGALLTELDETVGAIASGGQTPRGRLRISAPLLFSQTAMGKLAASFALR
EEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHC
YPEVRLDVTTDDRTVDMVEEGYDLVIRVNPAPDDSLIGRIFLRDRMVVVAHPALARPDDA
CCEEEEEEECCCCHHHHHHCCCEEEEEECCCCCHHHHHHHHHHCCEEEEECCCCCCCCCH
TSVRAIVRSSDQITSWAVTGPAGPARISVEPILRLTSLIMVRDAVRAGVGAACLPLSLAS
HHHHHHHHCCCCCEEEEEECCCCCCEEEHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHC
HDLAAGRLVHWADVDAPPVALWTLYPSRRLLSPRVSAFLDHLKDAFPTGTSAELAAYVEG
CCCCCCCEEEEECCCCCCEEEEEECCCCHHCCHHHHHHHHHHHHHCCCCCCCEEEEEECC
>Mature Secondary Structure
MVEQMDLLALADFTLVARYGGFGRAARASGRPKATLSRRVAELEASLDIRLIERGGRALK
CCCCHHHHHHHHHHHHHHCCCCCCHHCCCCCCHHHHHHHHHHHHHCCEEEEEECCCCEEE
LTEEGRALFERTGALLTELDETVGAIASGGQTPRGRLRISAPLLFSQTAMGKLAASFALR
EEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHC
YPEVRLDVTTDDRTVDMVEEGYDLVIRVNPAPDDSLIGRIFLRDRMVVVAHPALARPDDA
CCEEEEEEECCCCHHHHHHCCCEEEEEECCCCCHHHHHHHHHHCCEEEEECCCCCCCCCH
TSVRAIVRSSDQITSWAVTGPAGPARISVEPILRLTSLIMVRDAVRAGVGAACLPLSLAS
HHHHHHHHCCCCCEEEEEECCCCCCEEEHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHC
HDLAAGRLVHWADVDAPPVALWTLYPSRRLLSPRVSAFLDHLKDAFPTGTSAELAAYVEG
CCCCCCCEEEEECCCCCCEEEEEECCCCHHCCHHHHHHHHHHHHHCCCCCCCEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503 [H]