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The map label for this gene is pchR [H]

Identifier: 146302550

GI number: 146302550

Start: 5840725

End: 5841603

Strand: Direct

Name: pchR [H]

Synonym: Fjoh_4823

Alternate gene names: 146302550

Gene position: 5840725-5841603 (Clockwise)

Preceding gene: 146302549

Following gene: 146302551

Centisome position: 95.8

GC content: 35.15

Gene sequence:

>879_bases
ATGACGACAGATATTCTAGAATTACATGATTGTATTGTTTTAATCGAGCATTCGAATACCACAAAAACAATTGTTCAAAA
ATGTGAAATCGACGGCGATGCGCTGGGTTTTGCCTTTTATGGTTCGGGAAATGTTGAGTTAGAAATTAAACACAATAAAC
AGACTAAATATTTGGTAAATACAACAGGGCTGGCAATTTGTTTTTTTGGAAACCAAAAAGTCGAATTCTCACATAAAATT
GAACCCGACAGACCTTTACAGTCCATCAGTATTTTTACCAAACTGAAAAATCTTAATTCATTACCGCAAGCCGAAAAAGA
GATTTTCGAAAATCATTTACCACAATTATTAAACCCAAAAGAACATTTTGTAAAAGGTCCGTCGTTTTACATGACACTCG
AAATGCAGCTGGCGGTTCAAAAAATCTTTAATACAACCTACACCGGAAATACACGTTTGTTATTTTTAAAAAGTCAGGTC
AATGAACTTCTGGCACATTTTTATGCGCTTTTAGCTTCTGAGAAAAAACTGGATTTGTCTGAAACAGATAAAAACAAACT
TTTTCAGGCCAAAGAAATTGTTACCATCAATTATTCGACACCGCCGTCTATAACGCAGTTGTCACAAATGGTTGGGCTCA
ACAGCAATAAATTAAAAAAGAATTTCAAGGAACTTTTTGGGATTCCGGTTTTTAAATTTGTTCAGGAAGAACGATTAAAC
AAGGCGTATGAACTACTCCGCGAAAGCGAAAAAACAGTTCAGGAATCAGCCTGGGAAGTGGGTTACGAAAGTTTGAGTTC
GTTTTCGAATGCTTTTCATAAAAAATTTGGCATGCGTCCCAACGATGTAAAACAGCAGTTCTTTTCAAACAAATCATAA

Upstream 100 bases:

>100_bases
AAGCGGTTTCTATTTTATGTGAATCGGTAGAAGCGATTTCAAACATTTAAAAAAATAATAGTACCTTTTCATAAGTTTTA
TTCTAACCTCAACTTCAATT

Downstream 100 bases:

>100_bases
TTCCTTTGCGACAAATGATTGTGTTTTAATCTCAACAACTTTGTATCAGTAATCATCATTAAAAAACTACTGATATGAAA
AAGAAAATTTTAGTTCTGGG

Product: helix-turn-helix domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 292; Mature: 291

Protein sequence:

>292_residues
MTTDILELHDCIVLIEHSNTTKTIVQKCEIDGDALGFAFYGSGNVELEIKHNKQTKYLVNTTGLAICFFGNQKVEFSHKI
EPDRPLQSISIFTKLKNLNSLPQAEKEIFENHLPQLLNPKEHFVKGPSFYMTLEMQLAVQKIFNTTYTGNTRLLFLKSQV
NELLAHFYALLASEKKLDLSETDKNKLFQAKEIVTINYSTPPSITQLSQMVGLNSNKLKKNFKELFGIPVFKFVQEERLN
KAYELLRESEKTVQESAWEVGYESLSSFSNAFHKKFGMRPNDVKQQFFSNKS

Sequences:

>Translated_292_residues
MTTDILELHDCIVLIEHSNTTKTIVQKCEIDGDALGFAFYGSGNVELEIKHNKQTKYLVNTTGLAICFFGNQKVEFSHKI
EPDRPLQSISIFTKLKNLNSLPQAEKEIFENHLPQLLNPKEHFVKGPSFYMTLEMQLAVQKIFNTTYTGNTRLLFLKSQV
NELLAHFYALLASEKKLDLSETDKNKLFQAKEIVTINYSTPPSITQLSQMVGLNSNKLKKNFKELFGIPVFKFVQEERLN
KAYELLRESEKTVQESAWEVGYESLSSFSNAFHKKFGMRPNDVKQQFFSNKS
>Mature_291_residues
TTDILELHDCIVLIEHSNTTKTIVQKCEIDGDALGFAFYGSGNVELEIKHNKQTKYLVNTTGLAICFFGNQKVEFSHKIE
PDRPLQSISIFTKLKNLNSLPQAEKEIFENHLPQLLNPKEHFVKGPSFYMTLEMQLAVQKIFNTTYTGNTRLLFLKSQVN
ELLAHFYALLASEKKLDLSETDKNKLFQAKEIVTINYSTPPSITQLSQMVGLNSNKLKKNFKELFGIPVFKFVQEERLNK
AYELLRESEKTVQESAWEVGYESLSSFSNAFHKKFGMRPNDVKQQFFSNKS

Specific function: Positive activator of the genes for pyochelin and ferripyochelin receptors [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR018060 [H]

Pfam domain/function: PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 33522; Mature: 33391

Theoretical pI: Translated: 8.43; Mature: 8.43

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTDILELHDCIVLIEHSNTTKTIVQKCEIDGDALGFAFYGSGNVELEIKHNKQTKYLVN
CCCCHHHHCCEEEEEECCCCHHHHHHHHCCCCCEEEEEEECCCCEEEEEEECCCCEEEEE
TTGLAICFFGNQKVEFSHKIEPDRPLQSISIFTKLKNLNSLPQAEKEIFENHLPQLLNPK
CCCEEEEEECCCEEEECCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHCHHHCCCH
EHFVKGPSFYMTLEMQLAVQKIFNTTYTGNTRLLFLKSQVNELLAHFYALLASEKKLDLS
HHHCCCCCEEEEEHHHHHHHHHHCCCCCCCEEEEEEHHHHHHHHHHHHHHHHCCCCCCCC
ETDKNKLFQAKEIVTINYSTPPSITQLSQMVGLNSNKLKKNFKELFGIPVFKFVQEERLN
CCCHHHHEEEEEEEEEECCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHH
KAYELLRESEKTVQESAWEVGYESLSSFSNAFHKKFGMRPNDVKQQFFSNKS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCC
>Mature Secondary Structure 
TTDILELHDCIVLIEHSNTTKTIVQKCEIDGDALGFAFYGSGNVELEIKHNKQTKYLVN
CCCHHHHCCEEEEEECCCCHHHHHHHHCCCCCEEEEEEECCCCEEEEEEECCCCEEEEE
TTGLAICFFGNQKVEFSHKIEPDRPLQSISIFTKLKNLNSLPQAEKEIFENHLPQLLNPK
CCCEEEEEECCCEEEECCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHCHHHCCCH
EHFVKGPSFYMTLEMQLAVQKIFNTTYTGNTRLLFLKSQVNELLAHFYALLASEKKLDLS
HHHCCCCCEEEEEHHHHHHHHHHCCCCCCCEEEEEEHHHHHHHHHHHHHHHHCCCCCCCC
ETDKNKLFQAKEIVTINYSTPPSITQLSQMVGLNSNKLKKNFKELFGIPVFKFVQEERLN
CCCHHHHEEEEEEEEEECCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHH
KAYELLRESEKTVQESAWEVGYESLSSFSNAFHKKFGMRPNDVKQQFFSNKS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8397186; 10984043 [H]