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The map label for this gene is ydfD [H]

Identifier: 146302549

GI number: 146302549

Start: 5839184

End: 5840674

Strand: Direct

Name: ydfD [H]

Synonym: Fjoh_4822

Alternate gene names: 146302549

Gene position: 5839184-5840674 (Clockwise)

Preceding gene: 146302547

Following gene: 146302550

Centisome position: 95.77

GC content: 34.47

Gene sequence:

>1491_bases
ATGAGTGGTCCGGTTCAAATTCCTTTTAAAAGCTTCATTGAGCTTAAGCCCAAAGAAAATACGGCAATCTATCTGCAAAT
CGTTTTTGAATTTATAAAAGCGATACAAACGGGATTTCTTCCCGAAGGAACTAAACTTCCGGGCACGCGTATATTATGCA
GACAGCTTTCTGTAAACCGAAATACGTTAATTAAAGCTTTTCAGGATCTGGAATCGCAGGGCTGGATTGAAACTCTGCCA
AACAAAGGGACATTTATATTGTCTCAGCATAAGCAAAAAAGCAAAGATGAATTTATTGCTCCTTCCAATCAAAAACATTC
AGAAAATAATATTGGATTTACTTTTAAAAAATCAACAATACTTGAAAATCCAACAGAAACCAGTACTCTTCCGTATCAGT
TTAATGACGGAATGCCTGATTTAAGATTGGTTCAAAATGAGATTTTGGCCAGATTGTATGTTTCAAAATTAAAAAGGCAG
AAAACTTCTAAAACTTACGAGCAGATTCAGATTCAGTCGCACTTAAATTTTAAAACTCATTTTTCGAATTACTTAAATCT
TACGAGGGGTTTACGTATTTCTACTTCGAATCTGCTTACGGCAAGCAGTCATGAAATTAGTTTGTATCTGGTTACCAAAG
CGCTTATTTCTCCGGGGGATAAAGTTGTAGTGGCTTCGCCGGGTTATTATATTTCGAATATGACTTTGACTAATACAGGA
GCGCAGATTATTACAATTCCGGTTGATCAGGACGGAATTGATACAAACCGATTGAAAGAGATTTGTAAAGAAACAGAAAT
CAGGATATTATACCTTACTTCAAACTATAATTATCCAACAACCATTTCTTTAAGTGCCAAAAGACGAATGGAAGTTTTGG
AATTGGCGAATCAATATGGATTTGTGATTTTAGAAGATGATTACGATTTTGATTTTCATTACGATAATAATCCAATTTTG
CCTTTAGCTGCATTTGATTCTAACCAAAAAGTAGTTTACATAGGCTCTTTTGGAAGATCACTTCCGTCGGGATTTAGTTA
TGGATTTGTGGCCGCGCCTTCTGAATTTATATTAGAACTGGAAAAACATCAAAACATTCTCGAACCCGGAATTGATGTTC
TTAAAGAGCAGGTTTTATCTGAATGGATTAATGAAGGCGAAGTGCACAGACTTTCGAAAAAGAACAAAAAAATCTATAAG
GAACGTCGGGATTATTTTGTTTCCTTATTAAATGAAAAATTAAGTTCTAAAATTAAATTTAAAGTACCGCTTAGAGGATT
AGCCGTTTGGATTGAATGGCTTGATAAATTTAATTTAATAACGCTTCAAAAAGAATGTGCAGCAAACGGATTATTCCTGC
CTAAAACCATTTTATACCAAACCAAAGATCTTACGGCTACAAGGTTGGGATTTGGGCATTTGGAAAAACAAGAAATGGAA
AAAGCGGTTTCTATTTTATGTGAATCGGTAGAAGCGATTTCAAACATTTAA

Upstream 100 bases:

>100_bases
CTAATGTAAAGACTGCAAAATAGATTTTTTTCATTTTGGTTTAAAATTTTTGCAAAAGTAGTATCTTGCCGTACTAATAA
AGTATACCAGTTTTGTAATT

Downstream 100 bases:

>100_bases
AAAAATAATAGTACCTTTTCATAAGTTTTATTCTAACCTCAACTTCAATTATGACGACAGATATTCTAGAATTACATGAT
TGTATTGTTTTAATCGAGCA

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 496; Mature: 495

Protein sequence:

>496_residues
MSGPVQIPFKSFIELKPKENTAIYLQIVFEFIKAIQTGFLPEGTKLPGTRILCRQLSVNRNTLIKAFQDLESQGWIETLP
NKGTFILSQHKQKSKDEFIAPSNQKHSENNIGFTFKKSTILENPTETSTLPYQFNDGMPDLRLVQNEILARLYVSKLKRQ
KTSKTYEQIQIQSHLNFKTHFSNYLNLTRGLRISTSNLLTASSHEISLYLVTKALISPGDKVVVASPGYYISNMTLTNTG
AQIITIPVDQDGIDTNRLKEICKETEIRILYLTSNYNYPTTISLSAKRRMEVLELANQYGFVILEDDYDFDFHYDNNPIL
PLAAFDSNQKVVYIGSFGRSLPSGFSYGFVAAPSEFILELEKHQNILEPGIDVLKEQVLSEWINEGEVHRLSKKNKKIYK
ERRDYFVSLLNEKLSSKIKFKVPLRGLAVWIEWLDKFNLITLQKECAANGLFLPKTILYQTKDLTATRLGFGHLEKQEME
KAVSILCESVEAISNI

Sequences:

>Translated_496_residues
MSGPVQIPFKSFIELKPKENTAIYLQIVFEFIKAIQTGFLPEGTKLPGTRILCRQLSVNRNTLIKAFQDLESQGWIETLP
NKGTFILSQHKQKSKDEFIAPSNQKHSENNIGFTFKKSTILENPTETSTLPYQFNDGMPDLRLVQNEILARLYVSKLKRQ
KTSKTYEQIQIQSHLNFKTHFSNYLNLTRGLRISTSNLLTASSHEISLYLVTKALISPGDKVVVASPGYYISNMTLTNTG
AQIITIPVDQDGIDTNRLKEICKETEIRILYLTSNYNYPTTISLSAKRRMEVLELANQYGFVILEDDYDFDFHYDNNPIL
PLAAFDSNQKVVYIGSFGRSLPSGFSYGFVAAPSEFILELEKHQNILEPGIDVLKEQVLSEWINEGEVHRLSKKNKKIYK
ERRDYFVSLLNEKLSSKIKFKVPLRGLAVWIEWLDKFNLITLQKECAANGLFLPKTILYQTKDLTATRLGFGHLEKQEME
KAVSILCESVEAISNI
>Mature_495_residues
SGPVQIPFKSFIELKPKENTAIYLQIVFEFIKAIQTGFLPEGTKLPGTRILCRQLSVNRNTLIKAFQDLESQGWIETLPN
KGTFILSQHKQKSKDEFIAPSNQKHSENNIGFTFKKSTILENPTETSTLPYQFNDGMPDLRLVQNEILARLYVSKLKRQK
TSKTYEQIQIQSHLNFKTHFSNYLNLTRGLRISTSNLLTASSHEISLYLVTKALISPGDKVVVASPGYYISNMTLTNTGA
QIITIPVDQDGIDTNRLKEICKETEIRILYLTSNYNYPTTISLSAKRRMEVLELANQYGFVILEDDYDFDFHYDNNPILP
LAAFDSNQKVVYIGSFGRSLPSGFSYGFVAAPSEFILELEKHQNILEPGIDVLKEQVLSEWINEGEVHRLSKKNKKIYKE
RRDYFVSLLNEKLSSKIKFKVPLRGLAVWIEWLDKFNLITLQKECAANGLFLPKTILYQTKDLTATRLGFGHLEKQEMEK
AVSILCESVEAISNI

Specific function: Unknown

COG id: COG1167

COG function: function code KE; Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Homo sapiens, GI7705897, Length=314, Percent_Identity=24.203821656051, Blast_Score=105, Evalue=1e-22,
Organism=Homo sapiens, GI33469970, Length=314, Percent_Identity=24.203821656051, Blast_Score=105, Evalue=1e-22,
Organism=Escherichia coli, GI1790797, Length=426, Percent_Identity=24.1784037558685, Blast_Score=118, Evalue=1e-27,
Organism=Escherichia coli, GI1787710, Length=330, Percent_Identity=24.5454545454545, Blast_Score=109, Evalue=4e-25,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004839
- InterPro:   IPR000524
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00155 Aminotran_1_2; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 56621; Mature: 56490

Theoretical pI: Translated: 8.88; Mature: 8.88

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSGPVQIPFKSFIELKPKENTAIYLQIVFEFIKAIQTGFLPEGTKLPGTRILCRQLSVNR
CCCCCCCCHHHHEEECCCCCCEEHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCH
NTLIKAFQDLESQGWIETLPNKGTFILSQHKQKSKDEFIAPSNQKHSENNIGFTFKKSTI
HHHHHHHHHHHHCCCCEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEECCCE
LENPTETSTLPYQFNDGMPDLRLVQNEILARLYVSKLKRQKTSKTYEQIQIQSHLNFKTH
ECCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEHHHCCCHHHH
FSNYLNLTRGLRISTSNLLTASSHEISLYLVTKALISPGDKVVVASPGYYISNMTLTNTG
HHHHHHHHCCCEEECCCEEEECCCCEEEEEEEHHHHCCCCEEEEECCCEEEEEEEEECCC
AQIITIPVDQDGIDTNRLKEICKETEIRILYLTSNYNYPTTISLSAKRRMEVLELANQYG
CEEEEEECCCCCCCHHHHHHHHHHCCEEEEEEECCCCCCEEEEECHHHHHHHHHHHHHCC
FVILEDDYDFDFHYDNNPILPLAAFDSNQKVVYIGSFGRSLPSGFSYGFVAAPSEFILEL
EEEEECCCCCEEEECCCCEEEEEEECCCCEEEEEECCCCCCCCCCCCCEEECCHHHHHHH
EKHQNILEPGIDVLKEQVLSEWINEGEVHRLSKKNKKIYKERRDYFVSLLNEKLSSKIKF
HHHCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEE
KVPLRGLAVWIEWLDKFNLITLQKECAANGLFLPKTILYQTKDLTATRLGFGHLEKQEME
EECHHHHHHHHHHHHCCCEEEEEHHHCCCCCCCCHHHHEECCCCCCHHHCCCCCCHHHHH
KAVSILCESVEAISNI
HHHHHHHHHHHHHHCC
>Mature Secondary Structure 
SGPVQIPFKSFIELKPKENTAIYLQIVFEFIKAIQTGFLPEGTKLPGTRILCRQLSVNR
CCCCCCCHHHHEEECCCCCCEEHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCH
NTLIKAFQDLESQGWIETLPNKGTFILSQHKQKSKDEFIAPSNQKHSENNIGFTFKKSTI
HHHHHHHHHHHHCCCCEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEECCCE
LENPTETSTLPYQFNDGMPDLRLVQNEILARLYVSKLKRQKTSKTYEQIQIQSHLNFKTH
ECCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEHHHCCCHHHH
FSNYLNLTRGLRISTSNLLTASSHEISLYLVTKALISPGDKVVVASPGYYISNMTLTNTG
HHHHHHHHCCCEEECCCEEEECCCCEEEEEEEHHHHCCCCEEEEECCCEEEEEEEEECCC
AQIITIPVDQDGIDTNRLKEICKETEIRILYLTSNYNYPTTISLSAKRRMEVLELANQYG
CEEEEEECCCCCCCHHHHHHHHHHCCEEEEEEECCCCCCEEEEECHHHHHHHHHHHHHCC
FVILEDDYDFDFHYDNNPILPLAAFDSNQKVVYIGSFGRSLPSGFSYGFVAAPSEFILEL
EEEEECCCCCEEEECCCCEEEEEEECCCCEEEEEECCCCCCCCCCCCCEEECCHHHHHHH
EKHQNILEPGIDVLKEQVLSEWINEGEVHRLSKKNKKIYKERRDYFVSLLNEKLSSKIKF
HHHCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEE
KVPLRGLAVWIEWLDKFNLITLQKECAANGLFLPKTILYQTKDLTATRLGFGHLEKQEME
EECHHHHHHHHHHHHCCCEEEEEHHHCCCCCCCCHHHHEECCCCCCHHHCCCCCCHHHHH
KAVSILCESVEAISNI
HHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]