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The map label for this gene is asnC [H]

Identifier: 146302385

GI number: 146302385

Start: 5635271

End: 5635723

Strand: Direct

Name: asnC [H]

Synonym: Fjoh_4658

Alternate gene names: 146302385

Gene position: 5635271-5635723 (Clockwise)

Preceding gene: 146302382

Following gene: 146302386

Centisome position: 92.43

GC content: 33.11

Gene sequence:

>453_bases
ATGGATATGTTAGATGAATTTGACGTAAAAATCATCAAAGAGTTAGAAAAAGACGGTCGAATTGCTTATTCGACAATTGC
TTCTAATTTGAAAATTTCGAATACAATGGTGCATCAGCGTATAAACCGTTTATTTGAGCAGGGCATAATTACAGGAATCA
AACCTATTTTAAACGAAAAACAAATTGGGTACGACTGGGCTTCTTTTACTGGAATTACATTAAATAAGGATTCTGATTCT
GAAAGAATTATTGAGGCTTTAAAAGAAATTCCCGAAATTACAGAATGCTATTTCGTAACGGGTTCGTTTACGCTTTACCT
TAAAATTACTGCTCGAAACCACGAACATATGCGTAAAATATTATACGATAAAATCGACAATATTCCAGGAATTGCCAAAA
CCGATTCTATGGTCGAATTGGGATGCGCTTTTAAAAGAAATGTCTCTTTATAA

Upstream 100 bases:

>100_bases
AATATAACTTATTTTAAAGCGTTTTTAAGTCATTTTAAAAAAATTGGCTTCAAATTCAATTGAGAGTTTTTTTATCTTTA
CAGAAATTAAAAATAACGGC

Downstream 100 bases:

>100_bases
AGAATCTCAATTTCATTCAATTTTAAGAATATAAACCTCTCAAGAAATGGCTTGAGAGGTTTTTTTGTAACATTTTATTT
CAGATATTTGTTAAAAATTG

Product: AsnC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 150; Mature: 150

Protein sequence:

>150_residues
MDMLDEFDVKIIKELEKDGRIAYSTIASNLKISNTMVHQRINRLFEQGIITGIKPILNEKQIGYDWASFTGITLNKDSDS
ERIIEALKEIPEITECYFVTGSFTLYLKITARNHEHMRKILYDKIDNIPGIAKTDSMVELGCAFKRNVSL

Sequences:

>Translated_150_residues
MDMLDEFDVKIIKELEKDGRIAYSTIASNLKISNTMVHQRINRLFEQGIITGIKPILNEKQIGYDWASFTGITLNKDSDS
ERIIEALKEIPEITECYFVTGSFTLYLKITARNHEHMRKILYDKIDNIPGIAKTDSMVELGCAFKRNVSL
>Mature_150_residues
MDMLDEFDVKIIKELEKDGRIAYSTIASNLKISNTMVHQRINRLFEQGIITGIKPILNEKQIGYDWASFTGITLNKDSDS
ERIIEALKEIPEITECYFVTGSFTLYLKITARNHEHMRKILYDKIDNIPGIAKTDSMVELGCAFKRNVSL

Specific function: Activator of asnA transcription [H]

COG id: COG1522

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH asnC-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790182, Length=146, Percent_Identity=29.4520547945205, Blast_Score=92, Evalue=1e-20,
Organism=Escherichia coli, GI1787116, Length=137, Percent_Identity=32.8467153284672, Blast_Score=79, Evalue=1e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011008
- InterPro:   IPR000485
- InterPro:   IPR019885
- InterPro:   IPR019888
- InterPro:   IPR019887
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01037 AsnC_trans_reg [H]

EC number: NA

Molecular weight: Translated: 17204; Mature: 17204

Theoretical pI: Translated: 6.27; Mature: 6.27

Prosite motif: PS50956 HTH_ASNC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDMLDEFDVKIIKELEKDGRIAYSTIASNLKISNTMVHQRINRLFEQGIITGIKPILNEK
CCCHHHHHHHHHHHHHHCCCEEHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
QIGYDWASFTGITLNKDSDSERIIEALKEIPEITECYFVTGSFTLYLKITARNHEHMRKI
CCCCCHHHEECEEECCCCCHHHHHHHHHHCCHHHHEEEEECCEEEEEEEEECCHHHHHHH
LYDKIDNIPGIAKTDSMVELGCAFKRNVSL
HHHHHCCCCCCCCCCHHHHHHHHHHCCCCC
>Mature Secondary Structure
MDMLDEFDVKIIKELEKDGRIAYSTIASNLKISNTMVHQRINRLFEQGIITGIKPILNEK
CCCHHHHHHHHHHHHHHCCCEEHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
QIGYDWASFTGITLNKDSDSERIIEALKEIPEITECYFVTGSFTLYLKITARNHEHMRKI
CCCCCHHHEECEEECCCCCHHHHHHHHHHCCHHHHEEEEECCEEEEEEEEECCHHHHHHH
LYDKIDNIPGIAKTDSMVELGCAFKRNVSL
HHHHHCCCCCCCCCCHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]