| Definition | Flavobacterium johnsoniae UW101 chromosome, complete genome. |
|---|---|
| Accession | NC_009441 |
| Length | 6,096,872 |
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The map label for this gene is 146302225
Identifier: 146302225
GI number: 146302225
Start: 5427104
End: 5428921
Strand: Reverse
Name: 146302225
Synonym: Fjoh_4498
Alternate gene names: NA
Gene position: 5428921-5427104 (Counterclockwise)
Preceding gene: 146302226
Following gene: 146302224
Centisome position: 89.04
GC content: 36.08
Gene sequence:
>1818_bases ATGACAATGTTCATGTATTGTCTAAATGTATATCCCAAAACTGCTATAAACCACAAAACTATGAATAAAAACACACCTTT AAATTCAGGAATTCAGCCTGATTTAAAAATAGAAACTGCTATTATTGGTGCCGGAACTTCCGGATTATACACCGCATATC GTTTGGTAACAGATAAAAAATATACCGCAGATCAGGTGCAGATTTTTGACCTGAGCAGTAAACTGGGCGGAAGACTGGAA TCTGTTATTATGCCGGGAATGGATTTCTGGGGCGAGTTAGGAGGAATGCGCTATCTGACTTCTCAGGAAATCGTAACTAC TTTAATTGAAGGTTATATATCTCCAAAAGATCCTAAAAAACGTATTCCTGTTTTAAAAGATAAAATGACACCGGTTCCGT TTCCAATGGGCAAGTCGTCAAAATTACTAATGTATCTTAGAAAAGAACGTTTTAAACAAGATGCGTGGGATGAAGCTCAG AAAAAAGGTAAAAAACTGCCAACGAGATATTATCTTAATGAGACTGATTTAGGCTTTAGTTCAGACCAGCTTTTTAATAA AATTATTTATGATGTTTTAATGGCAGATCCCTGGGTTGCTAAAAAATACCAAAAGAAAATCAAAAAAGGACATAATGTAT ACGACTATACTTTTGAATTAACCAGTGAAGATTGGGATGAAATCAAACCAAGACTGGTTTACAATTTTCCAAAATCTCCT TATGATAAAAGAAAAGTAAACGATCTGGGTTTCTGGAATTTAATTAAAGATCAGGTTTCGCAGGAAGGATATGAGTTTTT AGCCAATGCGGGAGGTTATTATTCAAATACCATCAACTGGAATTCTGCCGAAGCTTTTCCTTATATGGTGGGCGATTTTA CTGCAGGAACAATTTATAAAACCATTGAAGAAGGTTACGACAGTATTGCTTATGCAGTTGCCAATTCTTATATGGAACAC AAAGGTGCGTGCATTTGGTCAGAAAACAAATTAGAGACTTTTACCAAAGAACATTCTGTAAAAACACATAAATACCAGCT TACTTTTCTAAATATAAAAACCAACAGCAAATGGCATGTATATGCTAATTCAATTGTTTTGGCTATGCCGAGAAAATCTT TAGAACTTTTAGACCAGAACAATTTCTTTTTCAATGTGAATGAAAATTCGGTTTTAAATGAAAATATCCGTTCTGTTATT ATGGAGCCGGCTTTCAAAATATTAATGGGCTTTGAATATCCGTGGTGGAAAGAATTAGGAATAGATTCAGGACATTCGAT TACCGATTTACCAATGAGACAATGCTACTACTTTGGAACCGATAAAAAAACGAAAAACTCCATGCTTTTAGGAAGCTACG GCGATATGGAAACCGAAACATTCTGGAAAGCGCTTTCTGATGATAAAGTACTTTTTGAAGTTAAAGCGGCTAAATCGGCT TCGTTAAAAGAGCTTCACCAGTTAAATGATGTTCAGGCAACAAAACTTATGGTAGACGAATTGATGAATCAGCTTCGCGA ACTGCATGGTAAAGATGTAACCATACCAGAACCTTATGTAACCTATTTTAAAGACTGGACAGATGAGCCTTTTGGAGCAG GATATCATGCGTGGAAAGCAGGATTTTCTGTTGGAGATGTCATGAAATATATGAGAAAACCAAAACATGATGAACAGATT CATATTTGCGGTGAAGCATACTCAGATCAGCAGGGCTGGGTTGAAGGAGCATTTTGTGAGGCAGAGAAAATGCTGCAGGA TTATTTTGGGCTGAAACGTCCGTTCTGGCTTCCTGACAATTACTATTTAGGATGGTAA
Upstream 100 bases:
>100_bases TTCAATTTTTCATCCTGTATAAAGCATGTTTTGTGACCAATAATTTCCGCTTTGTGTCATTTTTTGATAATCGATTTTGT ATCTGCAATAATTTAGACGC
Downstream 100 bases:
>100_bases AAGGAGAAGTTTTTTGTTAGTAATTCAAATCATTAATTTAAAAAAGTAATAGTATGTTAAAACGTAACGGCTTTGATGAT GAGTTAAATTTAACTCATTT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 605; Mature: 604
Protein sequence:
>605_residues MTMFMYCLNVYPKTAINHKTMNKNTPLNSGIQPDLKIETAIIGAGTSGLYTAYRLVTDKKYTADQVQIFDLSSKLGGRLE SVIMPGMDFWGELGGMRYLTSQEIVTTLIEGYISPKDPKKRIPVLKDKMTPVPFPMGKSSKLLMYLRKERFKQDAWDEAQ KKGKKLPTRYYLNETDLGFSSDQLFNKIIYDVLMADPWVAKKYQKKIKKGHNVYDYTFELTSEDWDEIKPRLVYNFPKSP YDKRKVNDLGFWNLIKDQVSQEGYEFLANAGGYYSNTINWNSAEAFPYMVGDFTAGTIYKTIEEGYDSIAYAVANSYMEH KGACIWSENKLETFTKEHSVKTHKYQLTFLNIKTNSKWHVYANSIVLAMPRKSLELLDQNNFFFNVNENSVLNENIRSVI MEPAFKILMGFEYPWWKELGIDSGHSITDLPMRQCYYFGTDKKTKNSMLLGSYGDMETETFWKALSDDKVLFEVKAAKSA SLKELHQLNDVQATKLMVDELMNQLRELHGKDVTIPEPYVTYFKDWTDEPFGAGYHAWKAGFSVGDVMKYMRKPKHDEQI HICGEAYSDQQGWVEGAFCEAEKMLQDYFGLKRPFWLPDNYYLGW
Sequences:
>Translated_605_residues MTMFMYCLNVYPKTAINHKTMNKNTPLNSGIQPDLKIETAIIGAGTSGLYTAYRLVTDKKYTADQVQIFDLSSKLGGRLE SVIMPGMDFWGELGGMRYLTSQEIVTTLIEGYISPKDPKKRIPVLKDKMTPVPFPMGKSSKLLMYLRKERFKQDAWDEAQ KKGKKLPTRYYLNETDLGFSSDQLFNKIIYDVLMADPWVAKKYQKKIKKGHNVYDYTFELTSEDWDEIKPRLVYNFPKSP YDKRKVNDLGFWNLIKDQVSQEGYEFLANAGGYYSNTINWNSAEAFPYMVGDFTAGTIYKTIEEGYDSIAYAVANSYMEH KGACIWSENKLETFTKEHSVKTHKYQLTFLNIKTNSKWHVYANSIVLAMPRKSLELLDQNNFFFNVNENSVLNENIRSVI MEPAFKILMGFEYPWWKELGIDSGHSITDLPMRQCYYFGTDKKTKNSMLLGSYGDMETETFWKALSDDKVLFEVKAAKSA SLKELHQLNDVQATKLMVDELMNQLRELHGKDVTIPEPYVTYFKDWTDEPFGAGYHAWKAGFSVGDVMKYMRKPKHDEQI HICGEAYSDQQGWVEGAFCEAEKMLQDYFGLKRPFWLPDNYYLGW >Mature_604_residues TMFMYCLNVYPKTAINHKTMNKNTPLNSGIQPDLKIETAIIGAGTSGLYTAYRLVTDKKYTADQVQIFDLSSKLGGRLES VIMPGMDFWGELGGMRYLTSQEIVTTLIEGYISPKDPKKRIPVLKDKMTPVPFPMGKSSKLLMYLRKERFKQDAWDEAQK KGKKLPTRYYLNETDLGFSSDQLFNKIIYDVLMADPWVAKKYQKKIKKGHNVYDYTFELTSEDWDEIKPRLVYNFPKSPY DKRKVNDLGFWNLIKDQVSQEGYEFLANAGGYYSNTINWNSAEAFPYMVGDFTAGTIYKTIEEGYDSIAYAVANSYMEHK GACIWSENKLETFTKEHSVKTHKYQLTFLNIKTNSKWHVYANSIVLAMPRKSLELLDQNNFFFNVNENSVLNENIRSVIM EPAFKILMGFEYPWWKELGIDSGHSITDLPMRQCYYFGTDKKTKNSMLLGSYGDMETETFWKALSDDKVLFEVKAAKSAS LKELHQLNDVQATKLMVDELMNQLRELHGKDVTIPEPYVTYFKDWTDEPFGAGYHAWKAGFSVGDVMKYMRKPKHDEQIH ICGEAYSDQQGWVEGAFCEAEKMLQDYFGLKRPFWLPDNYYLGW
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 70096; Mature: 69965
Theoretical pI: Translated: 7.14; Mature: 7.14
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 4.0 %Met (Translated Protein) 4.8 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 3.8 %Met (Mature Protein) 4.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTMFMYCLNVYPKTAINHKTMNKNTPLNSGIQPDLKIETAIIGAGTSGLYTAYRLVTDKK CCCEEEEHHCCCCHHCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCHHHHHHHEEECCC YTADQVQIFDLSSKLGGRLESVIMPGMDFWGELGGMRYLTSQEIVTTLIEGYISPKDPKK CCCCCEEEEECHHHHCCHHHHHHCCCHHHHHHHCCCEEEHHHHHHHHHHHHCCCCCCCHH RIPVLKDKMTPVPFPMGKSSKLLMYLRKERFKQDAWDEAQKKGKKLPTRYYLNETDLGFS CCCCHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCC SDQLFNKIIYDVLMADPWVAKKYQKKIKKGHNVYDYTFELTSEDWDEIKPRLVYNFPKSP HHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCEEEEEEEECCCCHHHCCCEEEEECCCCC YDKRKVNDLGFWNLIKDQVSQEGYEFLANAGGYYSNTINWNSAEAFPYMVGDFTAGTIYK CCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEECCCCHHHHHH TIEEGYDSIAYAVANSYMEHKGACIWSENKLETFTKEHSVKTHKYQLTFLNIKTNSKWHV HHHHHHHHHHHHHHHHHHHHCCCEEECCCCHHHHHHHCCCEEEEEEEEEEEEEECCEEEE YANSIVLAMPRKSLELLDQNNFFFNVNENSVLNENIRSVIMEPAFKILMGFEYPWWKELG EECEEEEEECCHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHCC IDSGHSITDLPMRQCYYFGTDKKTKNSMLLGSYGDMETETFWKALSDDKVLFEVKAAKSA CCCCCCCCCCCHHHEEEECCCCCCCCCEEEECCCCCCHHHHHHHHCCCCEEEEEECCCCC SLKELHQLNDVQATKLMVDELMNQLRELHGKDVTIPEPYVTYFKDWTDEPFGAGYHAWKA HHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCCCCCCHHHHHC GFSVGDVMKYMRKPKHDEQIHICGEAYSDQQGWVEGAFCEAEKMLQDYFGLKRPFWLPDN CCCHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCC YYLGW CCCCC >Mature Secondary Structure TMFMYCLNVYPKTAINHKTMNKNTPLNSGIQPDLKIETAIIGAGTSGLYTAYRLVTDKK CCEEEEHHCCCCHHCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCHHHHHHHEEECCC YTADQVQIFDLSSKLGGRLESVIMPGMDFWGELGGMRYLTSQEIVTTLIEGYISPKDPKK CCCCCEEEEECHHHHCCHHHHHHCCCHHHHHHHCCCEEEHHHHHHHHHHHHCCCCCCCHH RIPVLKDKMTPVPFPMGKSSKLLMYLRKERFKQDAWDEAQKKGKKLPTRYYLNETDLGFS CCCCHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCC SDQLFNKIIYDVLMADPWVAKKYQKKIKKGHNVYDYTFELTSEDWDEIKPRLVYNFPKSP HHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCEEEEEEEECCCCHHHCCCEEEEECCCCC YDKRKVNDLGFWNLIKDQVSQEGYEFLANAGGYYSNTINWNSAEAFPYMVGDFTAGTIYK CCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEECCCCHHHHHH TIEEGYDSIAYAVANSYMEHKGACIWSENKLETFTKEHSVKTHKYQLTFLNIKTNSKWHV HHHHHHHHHHHHHHHHHHHHCCCEEECCCCHHHHHHHCCCEEEEEEEEEEEEEECCEEEE YANSIVLAMPRKSLELLDQNNFFFNVNENSVLNENIRSVIMEPAFKILMGFEYPWWKELG EECEEEEEECCHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHCC IDSGHSITDLPMRQCYYFGTDKKTKNSMLLGSYGDMETETFWKALSDDKVLFEVKAAKSA CCCCCCCCCCCHHHEEEECCCCCCCCCEEEECCCCCCHHHHHHHHCCCCEEEEEECCCCC SLKELHQLNDVQATKLMVDELMNQLRELHGKDVTIPEPYVTYFKDWTDEPFGAGYHAWKA HHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCCCCCCHHHHHC GFSVGDVMKYMRKPKHDEQIHICGEAYSDQQGWVEGAFCEAEKMLQDYFGLKRPFWLPDN CCCHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCC YYLGW CCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA