| Definition | Flavobacterium johnsoniae UW101 chromosome, complete genome. |
|---|---|
| Accession | NC_009441 |
| Length | 6,096,872 |
Click here to switch to the map view.
The map label for this gene is 146302226
Identifier: 146302226
GI number: 146302226
Start: 5429157
End: 5430581
Strand: Reverse
Name: 146302226
Synonym: Fjoh_4499
Alternate gene names: NA
Gene position: 5430581-5429157 (Counterclockwise)
Preceding gene: 146302227
Following gene: 146302225
Centisome position: 89.07
GC content: 37.54
Gene sequence:
>1425_bases ATGCTAAAAAAAATAGCCTATATAACTCTATTTGCATTAACGTTGACCTCTTGCAGCGATACGCTGGATGATATCAACAA AAATCCAAATGCAACTGAAACACCATTGGCACCTTACTTGTTAACAGGAACTTTAAAACAAGGAGCTGACTTATATTGGG GAGATGCTAATAATTTTAACTCGTCTTTACTATTTGTACAGCATTGGGCTAAAATTCAATACACTGAGCCAGACAGATAT GATGTTTCGAACACGTCTTTTACTTCTTTATGGAATACAGGTTATGCAACCTTGATTACAGACTTGAATACCATTATTAA TTTCCCGGATGCTCAGGCCAATTCAAATTATAAAGGAATTGCTATTGCTTTGCGTTCATGGACATTTTTATTGTTAACAG ATGCTTACGGAAATATTCCGTACAAAGAAGCAGGTCAAAAAGTAACACCAGCATACGATAGTCAAAAAGATGTGTACACA GGTCTGCTTGAAGATTTAAAAAAAGCCCAATCTTTGTTAGGAGCAGCAAATGGTACTGTAACTGGAGATTTAGTTTACAA GGGAGATGTTGTAAAATGGAAAAGATTTGTGAATTCACTTCGTCTGAGAATTGCATTAAGAATTTCAGACAGAGAACCGG TTTTAGCTAAACAAGCGGCTATTGATGCAACAAGTGATGCGGCTGGAGTATTAGCCAGTAATGCAGATACATTTAAGTTT ACTTACATCAGCTCGCCTCAACAAAACCCTGCATCAGCCTGGTTTGAAACTCGTGATGATTTCCGTATTTCAAAAACTAT GGTAGATAAATTAAAAGAATTTTCAGATCCGCGTTTACCGGTTTATGCACAATTGCCATCAGATGCAAGTGTTGGTACAT ACGTTGGCGGCGGTAACGGATTATCAAACAGTGATGCCAACAGCCAGGGTTTTGCCAAAACATCAAAACCAGGAACTTAT TTTCTGACATCAACATCACCGGCGGTAATTTATTCTTACTCTGAAGTATTGTTCAATCTTGCTGAAGCTGCAGCTAGAGG TTATATTTCTGGAGATGCAGAACAGCTTTATAAAAATGCAATTACGGCATCTTTCAATCAATTTGGAATTACTGATGCAA CAGTTATTTCTAATTATTTGAATCAGGCAAACGTGAAGTACGATGCGGCTAATTATGCTAAATCAATTGGTACTCAAAAA TGGATTGCTTTCTTCGGACAAGGTTTAGATGCTTTTACAGAATGGAGAAGATTAGATTATCCAGTATTAACAGCGGGGCC GGCTACCGTTTTAGACGGAAAAATTCCTTCTCGTTTTTTCTATCCGGGTACAGAGCAGTCACTAAATGGTGTAAGCTACC AGGCGGCGATAGAAGCTCAGGGAAAAGATTTACTGACTACAAAATTATGGTTTGATGTAAAATAA
Upstream 100 bases:
>100_bases TTTCAATACTGGAAATGCACAAGGTTTGGAGAGTTTAGCTTTACCAACAACTAGAAATTTCAGCCTTAATGTTAATCTTA AATTCTAAAAATACAGAATC
Downstream 100 bases:
>100_bases TCTGCATTAGAACTAATTTTTAAGCTGAATATATAAAAAGGCTGTCTCACAATTCGTGAGGCAGCCTTTTTTGTTTTACT GCAAAACAGCAATTAGAAAT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 474; Mature: 474
Protein sequence:
>474_residues MLKKIAYITLFALTLTSCSDTLDDINKNPNATETPLAPYLLTGTLKQGADLYWGDANNFNSSLLFVQHWAKIQYTEPDRY DVSNTSFTSLWNTGYATLITDLNTIINFPDAQANSNYKGIAIALRSWTFLLLTDAYGNIPYKEAGQKVTPAYDSQKDVYT GLLEDLKKAQSLLGAANGTVTGDLVYKGDVVKWKRFVNSLRLRIALRISDREPVLAKQAAIDATSDAAGVLASNADTFKF TYISSPQQNPASAWFETRDDFRISKTMVDKLKEFSDPRLPVYAQLPSDASVGTYVGGGNGLSNSDANSQGFAKTSKPGTY FLTSTSPAVIYSYSEVLFNLAEAAARGYISGDAEQLYKNAITASFNQFGITDATVISNYLNQANVKYDAANYAKSIGTQK WIAFFGQGLDAFTEWRRLDYPVLTAGPATVLDGKIPSRFFYPGTEQSLNGVSYQAAIEAQGKDLLTTKLWFDVK
Sequences:
>Translated_474_residues MLKKIAYITLFALTLTSCSDTLDDINKNPNATETPLAPYLLTGTLKQGADLYWGDANNFNSSLLFVQHWAKIQYTEPDRY DVSNTSFTSLWNTGYATLITDLNTIINFPDAQANSNYKGIAIALRSWTFLLLTDAYGNIPYKEAGQKVTPAYDSQKDVYT GLLEDLKKAQSLLGAANGTVTGDLVYKGDVVKWKRFVNSLRLRIALRISDREPVLAKQAAIDATSDAAGVLASNADTFKF TYISSPQQNPASAWFETRDDFRISKTMVDKLKEFSDPRLPVYAQLPSDASVGTYVGGGNGLSNSDANSQGFAKTSKPGTY FLTSTSPAVIYSYSEVLFNLAEAAARGYISGDAEQLYKNAITASFNQFGITDATVISNYLNQANVKYDAANYAKSIGTQK WIAFFGQGLDAFTEWRRLDYPVLTAGPATVLDGKIPSRFFYPGTEQSLNGVSYQAAIEAQGKDLLTTKLWFDVK >Mature_474_residues MLKKIAYITLFALTLTSCSDTLDDINKNPNATETPLAPYLLTGTLKQGADLYWGDANNFNSSLLFVQHWAKIQYTEPDRY DVSNTSFTSLWNTGYATLITDLNTIINFPDAQANSNYKGIAIALRSWTFLLLTDAYGNIPYKEAGQKVTPAYDSQKDVYT GLLEDLKKAQSLLGAANGTVTGDLVYKGDVVKWKRFVNSLRLRIALRISDREPVLAKQAAIDATSDAAGVLASNADTFKF TYISSPQQNPASAWFETRDDFRISKTMVDKLKEFSDPRLPVYAQLPSDASVGTYVGGGNGLSNSDANSQGFAKTSKPGTY FLTSTSPAVIYSYSEVLFNLAEAAARGYISGDAEQLYKNAITASFNQFGITDATVISNYLNQANVKYDAANYAKSIGTQK WIAFFGQGLDAFTEWRRLDYPVLTAGPATVLDGKIPSRFFYPGTEQSLNGVSYQAAIEAQGKDLLTTKLWFDVK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 52025; Mature: 52025
Theoretical pI: Translated: 5.30; Mature: 5.30
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 0.4 %Met (Translated Protein) 0.6 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 0.4 %Met (Mature Protein) 0.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLKKIAYITLFALTLTSCSDTLDDINKNPNATETPLAPYLLTGTLKQGADLYWGDANNFN CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCHHCCCEEEECCCCCCC SSLLFVQHWAKIQYTEPDRYDVSNTSFTSLWNTGYATLITDLNTIINFPDAQANSNYKGI CEEEEEEECCEEEECCCCCCCCCCCCHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCEE AIALRSWTFLLLTDAYGNIPYKEAGQKVTPAYDSQKDVYTGLLEDLKKAQSLLGAANGTV EEEEECEEEEEEECCCCCCCHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCE TGDLVYKGDVVKWKRFVNSLRLRIALRISDREPVLAKQAAIDATSDAAGVLASNADTFKF EEEEEEECCHHHHHHHHHHEEEEEEEEECCCCCCHHHHHHCCCCCCCCHHEECCCCEEEE TYISSPQQNPASAWFETRDDFRISKTMVDKLKEFSDPRLPVYAQLPSDASVGTYVGGGNG EEECCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCEEECCCCC LSNSDANSQGFAKTSKPGTYFLTSTSPAVIYSYSEVLFNLAEAAARGYISGDAEQLYKNA CCCCCCCCCCCEECCCCCEEEEECCCCEEEEEHHHHHHHHHHHHHCCCCCCCHHHHHHHH ITASFNQFGITDATVISNYLNQANVKYDAANYAKSIGTQKWIAFFGQGLDAFTEWRRLDY HHHCHHHCCCCHHHHHHHHHHHCCCEECHHHHHHHHCHHHHHHHHHCCHHHHHHHHHCCC PVLTAGPATVLDGKIPSRFFYPGTEQSLNGVSYQAAIEAQGKDLLTTKLWFDVK CEEECCCCCEECCCCCCCEECCCCCCCCCCCEEEEEEECCCCEEEEEEEEEECC >Mature Secondary Structure MLKKIAYITLFALTLTSCSDTLDDINKNPNATETPLAPYLLTGTLKQGADLYWGDANNFN CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCHHCCCEEEECCCCCCC SSLLFVQHWAKIQYTEPDRYDVSNTSFTSLWNTGYATLITDLNTIINFPDAQANSNYKGI CEEEEEEECCEEEECCCCCCCCCCCCHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCEE AIALRSWTFLLLTDAYGNIPYKEAGQKVTPAYDSQKDVYTGLLEDLKKAQSLLGAANGTV EEEEECEEEEEEECCCCCCCHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCE TGDLVYKGDVVKWKRFVNSLRLRIALRISDREPVLAKQAAIDATSDAAGVLASNADTFKF EEEEEEECCHHHHHHHHHHEEEEEEEEECCCCCCHHHHHHCCCCCCCCHHEECCCCEEEE TYISSPQQNPASAWFETRDDFRISKTMVDKLKEFSDPRLPVYAQLPSDASVGTYVGGGNG EEECCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCEEECCCCC LSNSDANSQGFAKTSKPGTYFLTSTSPAVIYSYSEVLFNLAEAAARGYISGDAEQLYKNA CCCCCCCCCCCEECCCCCEEEEECCCCEEEEEHHHHHHHHHHHHHCCCCCCCHHHHHHHH ITASFNQFGITDATVISNYLNQANVKYDAANYAKSIGTQKWIAFFGQGLDAFTEWRRLDY HHHCHHHCCCCHHHHHHHHHHHCCCEECHHHHHHHHCHHHHHHHHHCCHHHHHHHHHCCC PVLTAGPATVLDGKIPSRFFYPGTEQSLNGVSYQAAIEAQGKDLLTTKLWFDVK CEEECCCCCEECCCCCCCEECCCCCCCCCCCEEEEEEECCCCEEEEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA