| Definition | Flavobacterium johnsoniae UW101 chromosome, complete genome. |
|---|---|
| Accession | NC_009441 |
| Length | 6,096,872 |
Click here to switch to the map view.
The map label for this gene is 146302221
Identifier: 146302221
GI number: 146302221
Start: 5422614
End: 5424299
Strand: Direct
Name: 146302221
Synonym: Fjoh_4494
Alternate gene names: NA
Gene position: 5422614-5424299 (Clockwise)
Preceding gene: 146302219
Following gene: 146302222
Centisome position: 88.94
GC content: 34.4
Gene sequence:
>1686_bases ATGCACTTCGCAATTCGATATTTATTTTATCTTTATCTTATGTATAGATCAGCTTTTTTTACCATTTTTTTAGTGCTATT GTTTACATCATGTAAGCAGTATACGGAGTTCGTCAAATCTGATGTAACCTATTATAAAGATGACGATAAACCACATGATT ATCTGGGTTCATCACCAGATTCTATATTTAAGGTTAATATTGATGTTGATCTTTACAAACGAGAAAATCCCTCTGCTCCG CTGGGACTGCAGATTAATGCTTTTGGTGCTTTTGACGTTTATTGGGACGGTGTATTAGTGGGAAGCAACGGTAAAATGGC AAAATCTGGTCAGAGCGAAGTACCGGGAACAGAAATGAGCTATTACCAAATACCCGAAAAACTGGCTGGTAAAGGCAAAC ATATTGTAACCATAACAGGAACACAAATGCAGCTTAGAGAAACCCTGCGCGGCATAGATGTAAAACTCGAAAGTTATTTA AGGCTGCACCGCGCACCGCTTATTGTTATGTCTTTTATGAACCTCATGGCTGGGGCTTTTCTCATTGCATCAATTTATTA TTTTTTTCTATACATCAACAGCACTCGAAAAGAAGCAACAGTTTTGCTTTTCGGAATAATCTGTCTGCTCTTTTTCTGTC TGCTTATTATAGAATACATAAAATTTTATATCGATATTCCGTATACACACTTTTATACACGGCTGCAAATTGTAGGCTTG CTTACTTTTATAATTTCCATATTGGTTCCGTGGTATTTTATGCTGCAGTTTGGCTTTAAAAGAAAGCGGTTATTTCTATT TCTTTTGTTTGCAGGTCTTGTAATAATCTATGTTAAACATTACGGACATTACGACAAAACAGCCATATATTTTAGCTATG TAATGTGCTTTGTCTCTATTATTATTGCAGCCGATGCGGCATTTCGAAAAATTAAAGGCGGAGTAATAGTAGTTGCGGGT TTATTGGCCAGCATTGTGGTAAATAAGTTTATATTTTATGATTTTGGATTGTTTATCTCTTTTACCATTATCGTATTGTC AATGCTTTACCTGCATACCATTAAAACTAAAGCTTTAGAAGAAGCTCATAATGCATCGTTATTACTTTCGTCCAGATTAC AGCTTGAACTTGTTAAGAAAAATATTCAGCCTCATTTTCTTCGCAATACCCTTACTTCTCTAATTGACTGGATCGAAGAA TCGCCGCAACAGGGCGTTGTGTTTATTCGGGCGCTGGCAGATGAATTTGATATTATGAATTCAATTTCTGAAGATACCTT AATACCTGTAAGGCAGGAGATTGAATTATGCAAAAAACATTTAGAAGTAATGTCTTTTAGAAAAGAATTGAATTACAAAT GGGAAGAAAAAAATATTGATGAAAATGAAGAAATTCCGCCTGCTATTATTCACACCATTATAGAAAATGGCATTACACAC AGTTTACCTTCAAAAGACGGTTCAATTACTTTCTGTTTAAGTTTTATAAGAGAAAAAAAATACAAACAATATACTTTGCT TACCGTGGCAAAAAATCGAAATAAAAAGAAAAGCGACCTCAGCGGAACAGGTTTTAAATATATAAAGGCCCGATTAAATG AAAGTTATGGCAATAACTGGCAGTTTGATTCTTTTGCTGTTGAAGAAGGATGGCTCACAGAAATTAAAATTTTTGATACA AAATGA
Upstream 100 bases:
>100_bases TATTACTGTTTTCATGTTTATTGGTTTTATGATACAAGATTACTTTATAAAACAAACCAGTGTTCTTTAAAACATTCAAA CGGCTCTAAGAGCTTTTGAA
Downstream 100 bases:
>100_bases AAATTCTAATTATTGAAGACGAAGCGAGAATTGCAAAACGAATCGAAAGAATGACCAGAGGTTTTTTTAATAAAGATGTC CAGATTTTTCTTTCTGATTC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 561; Mature: 561
Protein sequence:
>561_residues MHFAIRYLFYLYLMYRSAFFTIFLVLLFTSCKQYTEFVKSDVTYYKDDDKPHDYLGSSPDSIFKVNIDVDLYKRENPSAP LGLQINAFGAFDVYWDGVLVGSNGKMAKSGQSEVPGTEMSYYQIPEKLAGKGKHIVTITGTQMQLRETLRGIDVKLESYL RLHRAPLIVMSFMNLMAGAFLIASIYYFFLYINSTRKEATVLLFGIICLLFFCLLIIEYIKFYIDIPYTHFYTRLQIVGL LTFIISILVPWYFMLQFGFKRKRLFLFLLFAGLVIIYVKHYGHYDKTAIYFSYVMCFVSIIIAADAAFRKIKGGVIVVAG LLASIVVNKFIFYDFGLFISFTIIVLSMLYLHTIKTKALEEAHNASLLLSSRLQLELVKKNIQPHFLRNTLTSLIDWIEE SPQQGVVFIRALADEFDIMNSISEDTLIPVRQEIELCKKHLEVMSFRKELNYKWEEKNIDENEEIPPAIIHTIIENGITH SLPSKDGSITFCLSFIREKKYKQYTLLTVAKNRNKKKSDLSGTGFKYIKARLNESYGNNWQFDSFAVEEGWLTEIKIFDT K
Sequences:
>Translated_561_residues MHFAIRYLFYLYLMYRSAFFTIFLVLLFTSCKQYTEFVKSDVTYYKDDDKPHDYLGSSPDSIFKVNIDVDLYKRENPSAP LGLQINAFGAFDVYWDGVLVGSNGKMAKSGQSEVPGTEMSYYQIPEKLAGKGKHIVTITGTQMQLRETLRGIDVKLESYL RLHRAPLIVMSFMNLMAGAFLIASIYYFFLYINSTRKEATVLLFGIICLLFFCLLIIEYIKFYIDIPYTHFYTRLQIVGL LTFIISILVPWYFMLQFGFKRKRLFLFLLFAGLVIIYVKHYGHYDKTAIYFSYVMCFVSIIIAADAAFRKIKGGVIVVAG LLASIVVNKFIFYDFGLFISFTIIVLSMLYLHTIKTKALEEAHNASLLLSSRLQLELVKKNIQPHFLRNTLTSLIDWIEE SPQQGVVFIRALADEFDIMNSISEDTLIPVRQEIELCKKHLEVMSFRKELNYKWEEKNIDENEEIPPAIIHTIIENGITH SLPSKDGSITFCLSFIREKKYKQYTLLTVAKNRNKKKSDLSGTGFKYIKARLNESYGNNWQFDSFAVEEGWLTEIKIFDT K >Mature_561_residues MHFAIRYLFYLYLMYRSAFFTIFLVLLFTSCKQYTEFVKSDVTYYKDDDKPHDYLGSSPDSIFKVNIDVDLYKRENPSAP LGLQINAFGAFDVYWDGVLVGSNGKMAKSGQSEVPGTEMSYYQIPEKLAGKGKHIVTITGTQMQLRETLRGIDVKLESYL RLHRAPLIVMSFMNLMAGAFLIASIYYFFLYINSTRKEATVLLFGIICLLFFCLLIIEYIKFYIDIPYTHFYTRLQIVGL LTFIISILVPWYFMLQFGFKRKRLFLFLLFAGLVIIYVKHYGHYDKTAIYFSYVMCFVSIIIAADAAFRKIKGGVIVVAG LLASIVVNKFIFYDFGLFISFTIIVLSMLYLHTIKTKALEEAHNASLLLSSRLQLELVKKNIQPHFLRNTLTSLIDWIEE SPQQGVVFIRALADEFDIMNSISEDTLIPVRQEIELCKKHLEVMSFRKELNYKWEEKNIDENEEIPPAIIHTIIENGITH SLPSKDGSITFCLSFIREKKYKQYTLLTVAKNRNKKKSDLSGTGFKYIKARLNESYGNNWQFDSFAVEEGWLTEIKIFDT K
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 64997; Mature: 64997
Theoretical pI: Translated: 8.86; Mature: 8.86
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MHFAIRYLFYLYLMYRSAFFTIFLVLLFTSCKQYTEFVKSDVTYYKDDDKPHDYLGSSPD CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCHHHCCCCCC SIFKVNIDVDLYKRENPSAPLGLQINAFGAFDVYWDGVLVGSNGKMAKSGQSEVPGTEMS CEEEEEEEEEEEECCCCCCCCEEEEEEEEEEEEEECCEEECCCCCCCCCCCCCCCCCCCH YYQIPEKLAGKGKHIVTITGTQMQLRETLRGIDVKLESYLRLHRAPLIVMSFMNLMAGAF HHHCCHHHCCCCCEEEEEECCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH LIASIYYFFLYINSTRKEATVLLFGIICLLFFCLLIIEYIKFYIDIPYTHFYTRLQIVGL HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH LTFIISILVPWYFMLQFGFKRKRLFLFLLFAGLVIIYVKHYGHYDKTAIYFSYVMCFVSI HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH IIAADAAFRKIKGGVIVVAGLLASIVVNKFIFYDFGLFISFTIIVLSMLYLHTIKTKALE HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH EAHNASLLLSSRLQLELVKKNIQPHFLRNTLTSLIDWIEESPQQGVVFIRALADEFDIMN HHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH SISEDTLIPVRQEIELCKKHLEVMSFRKELNYKWEEKNIDENEEIPPAIIHTIIENGITH CCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCC SLPSKDGSITFCLSFIREKKYKQYTLLTVAKNRNKKKSDLSGTGFKYIKARLNESYGNNW CCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCCCC QFDSFAVEEGWLTEIKIFDTK CCCCEEECCCCEEEEEEEECC >Mature Secondary Structure MHFAIRYLFYLYLMYRSAFFTIFLVLLFTSCKQYTEFVKSDVTYYKDDDKPHDYLGSSPD CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCHHHCCCCCC SIFKVNIDVDLYKRENPSAPLGLQINAFGAFDVYWDGVLVGSNGKMAKSGQSEVPGTEMS CEEEEEEEEEEEECCCCCCCCEEEEEEEEEEEEEECCEEECCCCCCCCCCCCCCCCCCCH YYQIPEKLAGKGKHIVTITGTQMQLRETLRGIDVKLESYLRLHRAPLIVMSFMNLMAGAF HHHCCHHHCCCCCEEEEEECCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH LIASIYYFFLYINSTRKEATVLLFGIICLLFFCLLIIEYIKFYIDIPYTHFYTRLQIVGL HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH LTFIISILVPWYFMLQFGFKRKRLFLFLLFAGLVIIYVKHYGHYDKTAIYFSYVMCFVSI HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH IIAADAAFRKIKGGVIVVAGLLASIVVNKFIFYDFGLFISFTIIVLSMLYLHTIKTKALE HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH EAHNASLLLSSRLQLELVKKNIQPHFLRNTLTSLIDWIEESPQQGVVFIRALADEFDIMN HHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH SISEDTLIPVRQEIELCKKHLEVMSFRKELNYKWEEKNIDENEEIPPAIIHTIIENGITH CCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCC SLPSKDGSITFCLSFIREKKYKQYTLLTVAKNRNKKKSDLSGTGFKYIKARLNESYGNNW CCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCCCC QFDSFAVEEGWLTEIKIFDTK CCCCEEECCCCEEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA