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The map label for this gene is rhaS [C]

Identifier: 146302014

GI number: 146302014

Start: 5168483

End: 5169406

Strand: Direct

Name: rhaS [C]

Synonym: Fjoh_4278

Alternate gene names: 146302014

Gene position: 5168483-5169406 (Clockwise)

Preceding gene: 146302013

Following gene: 146302015

Centisome position: 84.77

GC content: 33.01

Gene sequence:

>924_bases
ATGAAATCTTTAGATTCATTTTACCAGGATATTACCGAAGGTTCAACAGTAGAGCCCACTTCCCTATTACCAAACGACAT
TCAAAAAGAGATTGGCCATTTTAATGTTTTTGATATTAAAGAACTTCTGGAACGTATGAAAGGAAAGCCTGGAATGCCTT
ATGACAGAAGAGCTTATTACAAAATAAGTTTGATTAGAGGGAAAAACAGAGCCGAATATGCTGATAAAATAATCGACATT
GAAAAACAGGGATTGTTATTTGCAACTCCAAAAATTCCCTACAATTATTTACCGCAGGATACCAATCAGGGCGGACAGTT
TTGTGTATTTACAAGCGAGTTTTTATCTAAAAGTAAAAGCGGTATTGATTTAGACGAACTTCCAATTTTTGCTTCAGACG
GTTATCCTATTTTTCAGTTATCAGATGAAGAAGTCGAAGAAGTTGCTTTGATTTTCAAAAAGATACAAAAAGAAATCAAT
TCTGATTATATTTATAAATACGATTTAATCCGAAATTATGTCGCTGAATTAATTCATTTCGGACAAAAATTGCAGCCTAT
AACAGCACTTTATTCTAAACACAATTCGGCAGCAAGAGTTTCGTCTTTATTTGCCGAATTATTAGAAAGACAATTTCCTA
TAGAATCGCCAAATCAACGTTTAGAACTAAGAACTGCGAAGGATTTTGCAGAACGATTATCGGTTCACGTCAATCATTTA
AATAAAGTTTTAAAAGAAAACACTGGAAAAACCACAACCGAATTAATCAGTACCAGATTAACAAACGAAGCAAAAATACT
TTTAAAGCAGACAGACTGGAATATTTCTGAAATCGCCTATTCGCTTGGTTTTGAAGAATTAGCACATTTTTCAAACTTCT
TTAAAAAACAAACTTCTTACACGCCGATTGCTTTTAGAGCTTAA

Upstream 100 bases:

>100_bases
CAAAAAACTTTGCGAACCTTGCGTAAAATCTTTGCGCTATTCGCAGTTAAACTCACGAAGCATATTTTTCCGTATATTTG
AATTTTACAATTCACGAATT

Downstream 100 bases:

>100_bases
ATTTTGTTGCAAGTTTCAAGTTGATATTCTTTGTGTGTTTTAACCGCAAAGAGCGCAAGGTTTTTTCTAAGCTTTATGTT
ATATAAACATAAAGTTCGCA

Product: helix-turn-helix domain-containing protein

Products: NA

Alternate protein names: AraC Family Transcriptional Regulator; Helix-Turn-Helix Domain-Containing Protein; Transcriptional Regulator; Transcriptional Regulator Arac Family; Transcriptional Regulatory Protein; AraC-Family Regulatory Protein; Helix-Turn-Helix- Domain Containing Protein AraC Type; Regulatory Protein; AraC-Type Transcription Regulator; Bacterial Regulatory Helix-Turn-Helix Protein; Transcriptional Regulator AraC Family Protein; Transcriptional Regulator Protein

Number of amino acids: Translated: 307; Mature: 307

Protein sequence:

>307_residues
MKSLDSFYQDITEGSTVEPTSLLPNDIQKEIGHFNVFDIKELLERMKGKPGMPYDRRAYYKISLIRGKNRAEYADKIIDI
EKQGLLFATPKIPYNYLPQDTNQGGQFCVFTSEFLSKSKSGIDLDELPIFASDGYPIFQLSDEEVEEVALIFKKIQKEIN
SDYIYKYDLIRNYVAELIHFGQKLQPITALYSKHNSAARVSSLFAELLERQFPIESPNQRLELRTAKDFAERLSVHVNHL
NKVLKENTGKTTTELISTRLTNEAKILLKQTDWNISEIAYSLGFEELAHFSNFFKKQTSYTPIAFRA

Sequences:

>Translated_307_residues
MKSLDSFYQDITEGSTVEPTSLLPNDIQKEIGHFNVFDIKELLERMKGKPGMPYDRRAYYKISLIRGKNRAEYADKIIDI
EKQGLLFATPKIPYNYLPQDTNQGGQFCVFTSEFLSKSKSGIDLDELPIFASDGYPIFQLSDEEVEEVALIFKKIQKEIN
SDYIYKYDLIRNYVAELIHFGQKLQPITALYSKHNSAARVSSLFAELLERQFPIESPNQRLELRTAKDFAERLSVHVNHL
NKVLKENTGKTTTELISTRLTNEAKILLKQTDWNISEIAYSLGFEELAHFSNFFKKQTSYTPIAFRA
>Mature_307_residues
MKSLDSFYQDITEGSTVEPTSLLPNDIQKEIGHFNVFDIKELLERMKGKPGMPYDRRAYYKISLIRGKNRAEYADKIIDI
EKQGLLFATPKIPYNYLPQDTNQGGQFCVFTSEFLSKSKSGIDLDELPIFASDGYPIFQLSDEEVEEVALIFKKIQKEIN
SDYIYKYDLIRNYVAELIHFGQKLQPITALYSKHNSAARVSSLFAELLERQFPIESPNQRLELRTAKDFAERLSVHVNHL
NKVLKENTGKTTTELISTRLTNEAKILLKQTDWNISEIAYSLGFEELAHFSNFFKKQTSYTPIAFRA

Specific function: Positive Activator Of Genes Required For L-Rhamnose Utilization, Probably Of The Rhamnose Transporter Gene (Rhat). [C]

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 35395; Mature: 35395

Theoretical pI: Translated: 6.53; Mature: 6.53

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSLDSFYQDITEGSTVEPTSLLPNDIQKEIGHFNVFDIKELLERMKGKPGMPYDRRAYY
CCHHHHHHHHHHCCCCCCCHHCCCHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCEEE
KISLIRGKNRAEYADKIIDIEKQGLLFATPKIPYNYLPQDTNQGGQFCVFTSEFLSKSKS
EEEEEECCCHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCEEEEEHHHHHCCCC
GIDLDELPIFASDGYPIFQLSDEEVEEVALIFKKIQKEINSDYIYKYDLIRNYVAELIHF
CCCHHHCCEEECCCEEEEEECHHHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHH
GQKLQPITALYSKHNSAARVSSLFAELLERQFPIESPNQRLELRTAKDFAERLSVHVNHL
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEHHHHHHHHHHHHHHHHHH
NKVLKENTGKTTTELISTRLTNEAKILLKQTDWNISEIAYSLGFEELAHFSNFFKKQTSY
HHHHHHCCCCHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHCHHHHHHHHHHHHHHCCC
TPIAFRA
CCEEECC
>Mature Secondary Structure
MKSLDSFYQDITEGSTVEPTSLLPNDIQKEIGHFNVFDIKELLERMKGKPGMPYDRRAYY
CCHHHHHHHHHHCCCCCCCHHCCCHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCEEE
KISLIRGKNRAEYADKIIDIEKQGLLFATPKIPYNYLPQDTNQGGQFCVFTSEFLSKSKS
EEEEEECCCHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCEEEEEHHHHHCCCC
GIDLDELPIFASDGYPIFQLSDEEVEEVALIFKKIQKEINSDYIYKYDLIRNYVAELIHF
CCCHHHCCEEECCCEEEEEECHHHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHH
GQKLQPITALYSKHNSAARVSSLFAELLERQFPIESPNQRLELRTAKDFAERLSVHVNHL
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEHHHHHHHHHHHHHHHHHH
NKVLKENTGKTTTELISTRLTNEAKILLKQTDWNISEIAYSLGFEELAHFSNFFKKQTSY
HHHHHHCCCCHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHCHHHHHHHHHHHHHHCCC
TPIAFRA
CCEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA