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The map label for this gene is kduI1 [H]

Identifier: 146302000

GI number: 146302000

Start: 5150530

End: 5151369

Strand: Reverse

Name: kduI1 [H]

Synonym: Fjoh_4264

Alternate gene names: 146302000

Gene position: 5151369-5150530 (Counterclockwise)

Preceding gene: 146302001

Following gene: 146301999

Centisome position: 84.49

GC content: 36.9

Gene sequence:

>840_bases
ATGACAAAATATAGTTCAAGATACGCGTCAAGTCCAGAAGCTGTAAAAAAATATGATACACAACAATTGAGAGAAGAATT
CTTAATTGATGATTTAATGCAGGAAGATGAAGTTGTATTAGTTTATTCTCATTACGACAGATATATTGCAGGATCTGCAG
TACCAGTAAAAGGAGATTTAGTTTTAGAAACTATTGATCCCTTAAAAGCACCATATTTTTTAGAAAGAAGAGAGCTTGGA
ATTATTAATGTAGGAGGAAGCGGTTCTGTGGTTGTTGAAGGAACCACTTATGAATTAGGATTTAAAGATGCTTTATACAT
TGGAGCTGGAAATAAAGAGGTGGTTTTTAAAAGTGATGACAAAAACAATCCTGCTAAGTTCTATTTAAACTCTGCACCAG
CACACACAACTTATCCAACTAAGAAAGTAAGTTTAGCTGAAGCGAATAAATTACAATTGGGTACAATGGAAACGGCAAAT
CACCGTACCGTTAACCAAATGATTATTGGAAGTGTTGTTACTACCTGTCAATTACAAATGGGAATGACAGAATTAAAACC
AGGAAGCGTTTGGAACACTATGCCGGCTCACGTTCACGACCGTAGAATGGAAGTTTATTTCTATTTAGATATTCCGCAAG
ATCAGGCAGTTTGCCACTTCATGGGGCAACCGCAAGAAACGAGACATATCTGGATGAACAATCATCAGGCCGTAATTTCG
CCGCCTTGGTCAATTCACTCAGGTTCAGGAACCAGCAACTATACTTTTATCTGGGGAATGGCTGGTGAAAACTTAGATTA
CGGAGATATGGACGTTTGTAAAATCACTGATTTAAGATAA

Upstream 100 bases:

>100_bases
AATGGATAATTTTTCTAAATAGAATAATTTTTTCATTTGAATTATGGTTTTTCAATATAAAAAATTAATTTTGTGCAATC
GATTACATTAAACAAAAATT

Downstream 100 bases:

>100_bases
GAAAATGACAAACTTATTTGACATAAAAGGAAAAGTTGCCCTTATTACAGGAAGTACGCACGGACTGGGAATGGCAATGG
CAAAAGGACTTGGACAAGCC

Product: 5-keto-4-deoxyuronate isomerase

Products: NA

Alternate protein names: 5-keto-4-deoxyuronate isomerase 1; DKI isomerase 1 [H]

Number of amino acids: Translated: 279; Mature: 278

Protein sequence:

>279_residues
MTKYSSRYASSPEAVKKYDTQQLREEFLIDDLMQEDEVVLVYSHYDRYIAGSAVPVKGDLVLETIDPLKAPYFLERRELG
IINVGGSGSVVVEGTTYELGFKDALYIGAGNKEVVFKSDDKNNPAKFYLNSAPAHTTYPTKKVSLAEANKLQLGTMETAN
HRTVNQMIIGSVVTTCQLQMGMTELKPGSVWNTMPAHVHDRRMEVYFYLDIPQDQAVCHFMGQPQETRHIWMNNHQAVIS
PPWSIHSGSGTSNYTFIWGMAGENLDYGDMDVCKITDLR

Sequences:

>Translated_279_residues
MTKYSSRYASSPEAVKKYDTQQLREEFLIDDLMQEDEVVLVYSHYDRYIAGSAVPVKGDLVLETIDPLKAPYFLERRELG
IINVGGSGSVVVEGTTYELGFKDALYIGAGNKEVVFKSDDKNNPAKFYLNSAPAHTTYPTKKVSLAEANKLQLGTMETAN
HRTVNQMIIGSVVTTCQLQMGMTELKPGSVWNTMPAHVHDRRMEVYFYLDIPQDQAVCHFMGQPQETRHIWMNNHQAVIS
PPWSIHSGSGTSNYTFIWGMAGENLDYGDMDVCKITDLR
>Mature_278_residues
TKYSSRYASSPEAVKKYDTQQLREEFLIDDLMQEDEVVLVYSHYDRYIAGSAVPVKGDLVLETIDPLKAPYFLERRELGI
INVGGSGSVVVEGTTYELGFKDALYIGAGNKEVVFKSDDKNNPAKFYLNSAPAHTTYPTKKVSLAEANKLQLGTMETANH
RTVNQMIIGSVVTTCQLQMGMTELKPGSVWNTMPAHVHDRRMEVYFYLDIPQDQAVCHFMGQPQETRHIWMNNHQAVISP
PWSIHSGSGTSNYTFIWGMAGENLDYGDMDVCKITDLR

Specific function: Pectin degradation. [C]

COG id: COG3717

COG function: function code G; 5-keto 4-deoxyuronate isomerase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the kduI family [H]

Homologues:

Organism=Escherichia coli, GI1789209, Length=266, Percent_Identity=57.1428571428571, Blast_Score=322, Evalue=1e-89,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011051
- InterPro:   IPR007045
- InterPro:   IPR021120 [H]

Pfam domain/function: PF04962 KduI [H]

EC number: =5.3.1.17 [H]

Molecular weight: Translated: 31391; Mature: 31260

Theoretical pI: Translated: 5.56; Mature: 5.56

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKYSSRYASSPEAVKKYDTQQLREEFLIDDLMQEDEVVLVYSHYDRYIAGSAVPVKGDL
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCEECCCCCCCCCCE
VLETIDPLKAPYFLERRELGIINVGGSGSVVVEGTTYELGFKDALYIGAGNKEVVFKSDD
EEEECCCCCCCEEEECCCEEEEEECCCCCEEEECCEEEECCCEEEEEECCCCEEEEECCC
KNNPAKFYLNSAPAHTTYPTKKVSLAEANKLQLGTMETANHRTVNQMIIGSVVTTCQLQM
CCCCEEEEECCCCCCCCCCCCEEEECCCCEEEEEEECCCCCCHHHHHHHHHHHHHEEEEC
GMTELKPGSVWNTMPAHVHDRRMEVYFYLDIPQDQAVCHFMGQPQETRHIWMNNHQAVIS
CCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCHHEECCCCCCCEEEEECCCEEEEC
PPWSIHSGSGTSNYTFIWGMAGENLDYGDMDVCKITDLR
CCCEEECCCCCCCEEEEEEECCCCCCCCCCCEEEEECCC
>Mature Secondary Structure 
TKYSSRYASSPEAVKKYDTQQLREEFLIDDLMQEDEVVLVYSHYDRYIAGSAVPVKGDL
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCEECCCCCCCCCCE
VLETIDPLKAPYFLERRELGIINVGGSGSVVVEGTTYELGFKDALYIGAGNKEVVFKSDD
EEEECCCCCCCEEEECCCEEEEEECCCCCEEEECCEEEECCCEEEEEECCCCEEEEECCC
KNNPAKFYLNSAPAHTTYPTKKVSLAEANKLQLGTMETANHRTVNQMIIGSVVTTCQLQM
CCCCEEEEECCCCCCCCCCCCEEEECCCCEEEEEEECCCCCCHHHHHHHHHHHHHEEEEC
GMTELKPGSVWNTMPAHVHDRRMEVYFYLDIPQDQAVCHFMGQPQETRHIWMNNHQAVIS
CCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCHHEECCCCCCCEEEEECCCEEEEC
PPWSIHSGSGTSNYTFIWGMAGENLDYGDMDVCKITDLR
CCCEEECCCCCCCEEEEEEECCCCCCCCCCCEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12663928 [H]