BacMap

Definition	Flavobacterium johnsoniae UW101 chromosome, complete genome.
Accession	NC_009441
Length	6,096,872

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The map label for this gene is idnO [H]

Identifier: 146301999

GI number: 146301999

Start: 5149734

End: 5150525

Strand: Reverse

Name: idnO [H]

Synonym: Fjoh_4263

Alternate gene names: 146301999

Gene position: 5150525-5149734 (Counterclockwise)

Preceding gene: 146302000

Following gene: 146301998

Centisome position: 84.48

GC content: 38.01

Gene sequence:

>792_bases
ATGACAAACTTATTTGACATAAAAGGAAAAGTTGCCCTTATTACAGGAAGTACGCACGGACTGGGAATGGCAATGGCAAA
AGGACTTGGACAAGCCGGAGCAACAATTGTTGTAAACGGAAATTCATCTCAGGAAAAAATTGATAATGCTGTAAAAGAAC
TTCAAAGTGAAGGGATTAATGCAGTGGGTTATAAATTTAATGTAACTGAAGAACAGGAAGTAAAAGATGCTGTTGCTAAA
ATTCAGGCAGAAGTTGGACCAATCGATATCCTGATTAACAATGCAGGAATCATTAAAAGAATTCCGCTTCTGGATATGGA
AGTTTCAGATTTCAGAGAAGTGGTTGATATTGATTTAGTAAGTCCATTTATCGTTTCTAAGCATGTTGCAAAAGGAATGA
TTGAAAGACGTCAGGGAAAAATAATCAACATTTGCTCTATGATGAGCGAATTAGGAAGAAATACGGTTTCTGCTTACGCT
GCTGCAAAAGGCGGTTTAAAAATGCTGACGAAAAACATGGCAACAGAATGGGCAAAATATAACGTTCAGATCAACGGAAT
CGGGCCAGGTTATTTTGCAACAGAGCAGACAAAACCAATTAGAGTTGACGGGCATCCGTTTAATGATTTTATCATAAGCA
GAACTCCTGCTGCAAAATGGGGAGATCCAAGTGATTTAGCCGGAGCAGCAATATTTTTATCTTCCAAAGCGAGTGATTTT
GTAAACGGGCATATTTTATATGTTGACGGTGGAATCCTGGCTACAATTGGAAAACCTTCAAACGAAGAATAA

Upstream 100 bases:

>100_bases
TCAGGAACCAGCAACTATACTTTTATCTGGGGAATGGCTGGTGAAAACTTAGATTACGGAGATATGGACGTTTGTAAAAT
CACTGATTTAAGATAAGAAA

Downstream 100 bases:

>100_bases
TTCTCAAATTATATTTAAAAAGACATGAGCGCAAATACATTCATACACGACAATTTTTTATTAGAAAATAAATACGCTGA
AGAGTTATATCATAATTACT

Product: gluconate 5-dehydrogenase

Products: NA

Alternate protein names: 5-keto-D-gluconate 5-reductase [H]

Number of amino acids: Translated: 263; Mature: 262

Protein sequence:

>263_residues
MTNLFDIKGKVALITGSTHGLGMAMAKGLGQAGATIVVNGNSSQEKIDNAVKELQSEGINAVGYKFNVTEEQEVKDAVAK
IQAEVGPIDILINNAGIIKRIPLLDMEVSDFREVVDIDLVSPFIVSKHVAKGMIERRQGKIINICSMMSELGRNTVSAYA
AAKGGLKMLTKNMATEWAKYNVQINGIGPGYFATEQTKPIRVDGHPFNDFIISRTPAAKWGDPSDLAGAAIFLSSKASDF
VNGHILYVDGGILATIGKPSNEE

Sequences:

>Translated_263_residues
MTNLFDIKGKVALITGSTHGLGMAMAKGLGQAGATIVVNGNSSQEKIDNAVKELQSEGINAVGYKFNVTEEQEVKDAVAK
IQAEVGPIDILINNAGIIKRIPLLDMEVSDFREVVDIDLVSPFIVSKHVAKGMIERRQGKIINICSMMSELGRNTVSAYA
AAKGGLKMLTKNMATEWAKYNVQINGIGPGYFATEQTKPIRVDGHPFNDFIISRTPAAKWGDPSDLAGAAIFLSSKASDF
VNGHILYVDGGILATIGKPSNEE
>Mature_262_residues
TNLFDIKGKVALITGSTHGLGMAMAKGLGQAGATIVVNGNSSQEKIDNAVKELQSEGINAVGYKFNVTEEQEVKDAVAKI
QAEVGPIDILINNAGIIKRIPLLDMEVSDFREVVDIDLVSPFIVSKHVAKGMIERRQGKIINICSMMSELGRNTVSAYAA
AKGGLKMLTKNMATEWAKYNVQINGIGPGYFATEQTKPIRVDGHPFNDFIISRTPAAKWGDPSDLAGAAIFLSSKASDFV
NGHILYVDGGILATIGKPSNEE

Specific function: Catalyzes a reversible reduction of 5-ketoglutanate to form D-gluconate. Dependent on NADP, almost inactive with NAD [H]

COG id: COG1028

COG function: function code IQR; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI32483357, Length=252, Percent_Identity=30.1587301587302, Blast_Score=113, Evalue=2e-25,
Organism=Homo sapiens, GI7705925, Length=250, Percent_Identity=29.6, Blast_Score=107, Evalue=1e-23,
Organism=Homo sapiens, GI15277342, Length=256, Percent_Identity=28.125, Blast_Score=103, Evalue=1e-22,
Organism=Homo sapiens, GI40254992, Length=243, Percent_Identity=25.1028806584362, Blast_Score=103, Evalue=2e-22,
Organism=Homo sapiens, GI19923817, Length=251, Percent_Identity=27.4900398406374, Blast_Score=100, Evalue=9e-22,
Organism=Homo sapiens, GI10190704, Length=252, Percent_Identity=26.984126984127, Blast_Score=98, Evalue=1e-20,
Organism=Homo sapiens, GI5031737, Length=245, Percent_Identity=27.7551020408163, Blast_Score=96, Evalue=4e-20,
Organism=Homo sapiens, GI20149619, Length=228, Percent_Identity=29.3859649122807, Blast_Score=95, Evalue=7e-20,
Organism=Homo sapiens, GI4758504, Length=265, Percent_Identity=29.4339622641509, Blast_Score=95, Evalue=7e-20,
Organism=Homo sapiens, GI59889578, Length=225, Percent_Identity=29.3333333333333, Blast_Score=89, Evalue=5e-18,
Organism=Homo sapiens, GI33667109, Length=197, Percent_Identity=28.4263959390863, Blast_Score=87, Evalue=2e-17,
Organism=Homo sapiens, GI126723750, Length=255, Percent_Identity=28.6274509803922, Blast_Score=84, Evalue=1e-16,
Organism=Homo sapiens, GI4503817, Length=205, Percent_Identity=27.8048780487805, Blast_Score=83, Evalue=2e-16,
Organism=Homo sapiens, GI4503301, Length=249, Percent_Identity=28.9156626506024, Blast_Score=83, Evalue=2e-16,
Organism=Homo sapiens, GI83715985, Length=265, Percent_Identity=28.6792452830189, Blast_Score=82, Evalue=4e-16,
Organism=Homo sapiens, GI126723191, Length=188, Percent_Identity=30.8510638297872, Blast_Score=82, Evalue=6e-16,
Organism=Homo sapiens, GI7706318, Length=224, Percent_Identity=24.5535714285714, Blast_Score=75, Evalue=6e-14,
Organism=Homo sapiens, GI4504505, Length=198, Percent_Identity=30.8080808080808, Blast_Score=75, Evalue=7e-14,
Organism=Homo sapiens, GI109715829, Length=246, Percent_Identity=26.0162601626016, Blast_Score=74, Evalue=2e-13,
Organism=Homo sapiens, GI66933014, Length=182, Percent_Identity=26.3736263736264, Blast_Score=72, Evalue=4e-13,
Organism=Homo sapiens, GI210032110, Length=196, Percent_Identity=21.4285714285714, Blast_Score=70, Evalue=1e-12,
Organism=Homo sapiens, GI7657478, Length=193, Percent_Identity=28.4974093264249, Blast_Score=70, Evalue=3e-12,
Organism=Homo sapiens, GI40254986, Length=200, Percent_Identity=27.5, Blast_Score=69, Evalue=6e-12,
Organism=Homo sapiens, GI7705855, Length=202, Percent_Identity=26.7326732673267, Blast_Score=67, Evalue=2e-11,
Organism=Escherichia coli, GI1790717, Length=256, Percent_Identity=50.78125, Blast_Score=280, Evalue=1e-76,
Organism=Escherichia coli, GI87082160, Length=252, Percent_Identity=41.2698412698413, Blast_Score=189, Evalue=1e-49,
Organism=Escherichia coli, GI1789208, Length=257, Percent_Identity=42.4124513618677, Blast_Score=182, Evalue=2e-47,
Organism=Escherichia coli, GI1787335, Length=248, Percent_Identity=33.0645161290323, Blast_Score=150, Evalue=8e-38,
Organism=Escherichia coli, GI1788459, Length=249, Percent_Identity=30.9236947791165, Blast_Score=125, Evalue=2e-30,
Organism=Escherichia coli, GI1787905, Length=245, Percent_Identity=33.8775510204082, Blast_Score=124, Evalue=6e-30,
Organism=Escherichia coli, GI87082100, Length=255, Percent_Identity=30.1960784313725, Blast_Score=111, Evalue=5e-26,
Organism=Escherichia coli, GI2367175, Length=250, Percent_Identity=26.4, Blast_Score=88, Evalue=7e-19,
Organism=Escherichia coli, GI1789057, Length=259, Percent_Identity=26.2548262548263, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI2367365, Length=247, Percent_Identity=27.9352226720648, Blast_Score=77, Evalue=8e-16,
Organism=Escherichia coli, GI1787820, Length=196, Percent_Identity=27.5510204081633, Blast_Score=75, Evalue=6e-15,
Organism=Escherichia coli, GI1786812, Length=253, Percent_Identity=24.1106719367589, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1789378, Length=250, Percent_Identity=24, Blast_Score=68, Evalue=7e-13,
Organism=Caenorhabditis elegans, GI17560676, Length=251, Percent_Identity=28.2868525896414, Blast_Score=109, Evalue=2e-24,
Organism=Caenorhabditis elegans, GI17555706, Length=249, Percent_Identity=28.1124497991968, Blast_Score=103, Evalue=1e-22,
Organism=Caenorhabditis elegans, GI17561402, Length=260, Percent_Identity=28.4615384615385, Blast_Score=100, Evalue=8e-22,
Organism=Caenorhabditis elegans, GI25147288, Length=252, Percent_Identity=28.968253968254, Blast_Score=98, Evalue=4e-21,
Organism=Caenorhabditis elegans, GI17562910, Length=275, Percent_Identity=29.4545454545455, Blast_Score=96, Evalue=2e-20,
Organism=Caenorhabditis elegans, GI193203115, Length=194, Percent_Identity=31.9587628865979, Blast_Score=96, Evalue=2e-20,
Organism=Caenorhabditis elegans, GI17536651, Length=253, Percent_Identity=28.4584980237154, Blast_Score=94, Evalue=6e-20,
Organism=Caenorhabditis elegans, GI17538182, Length=267, Percent_Identity=29.9625468164794, Blast_Score=94, Evalue=9e-20,
Organism=Caenorhabditis elegans, GI193203117, Length=196, Percent_Identity=31.1224489795918, Blast_Score=93, Evalue=2e-19,
Organism=Caenorhabditis elegans, GI17536025, Length=250, Percent_Identity=27.2, Blast_Score=92, Evalue=2e-19,
Organism=Caenorhabditis elegans, GI17562906, Length=265, Percent_Identity=27.5471698113208, Blast_Score=91, Evalue=8e-19,
Organism=Caenorhabditis elegans, GI71994604, Length=251, Percent_Identity=27.8884462151394, Blast_Score=87, Evalue=6e-18,
Organism=Caenorhabditis elegans, GI115534694, Length=248, Percent_Identity=24.5967741935484, Blast_Score=86, Evalue=2e-17,
Organism=Caenorhabditis elegans, GI17568967, Length=210, Percent_Identity=33.3333333333333, Blast_Score=84, Evalue=6e-17,
Organism=Caenorhabditis elegans, GI17544670, Length=264, Percent_Identity=28.7878787878788, Blast_Score=84, Evalue=8e-17,
Organism=Caenorhabditis elegans, GI71994600, Length=247, Percent_Identity=26.7206477732794, Blast_Score=84, Evalue=1e-16,
Organism=Caenorhabditis elegans, GI17562908, Length=270, Percent_Identity=26.6666666666667, Blast_Score=83, Evalue=1e-16,
Organism=Caenorhabditis elegans, GI17559104, Length=263, Percent_Identity=26.9961977186312, Blast_Score=82, Evalue=3e-16,
Organism=Caenorhabditis elegans, GI71997099, Length=214, Percent_Identity=29.4392523364486, Blast_Score=81, Evalue=5e-16,
Organism=Caenorhabditis elegans, GI17561272, Length=250, Percent_Identity=27.6, Blast_Score=80, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI17560220, Length=277, Percent_Identity=26.7148014440433, Blast_Score=79, Evalue=3e-15,
Organism=Caenorhabditis elegans, GI17563726, Length=260, Percent_Identity=29.2307692307692, Blast_Score=79, Evalue=3e-15,
Organism=Caenorhabditis elegans, GI17551412, Length=264, Percent_Identity=26.1363636363636, Blast_Score=78, Evalue=4e-15,
Organism=Caenorhabditis elegans, GI17531453, Length=272, Percent_Identity=26.1029411764706, Blast_Score=77, Evalue=8e-15,
Organism=Caenorhabditis elegans, GI17560150, Length=269, Percent_Identity=24.907063197026, Blast_Score=77, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI17560332, Length=266, Percent_Identity=25.5639097744361, Blast_Score=76, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI17562990, Length=268, Percent_Identity=25, Blast_Score=76, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI17538480, Length=273, Percent_Identity=26.007326007326, Blast_Score=75, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI17562904, Length=274, Percent_Identity=24.8175182481752, Blast_Score=74, Evalue=6e-14,
Organism=Caenorhabditis elegans, GI193204405, Length=261, Percent_Identity=24.1379310344828, Blast_Score=74, Evalue=8e-14,
Organism=Caenorhabditis elegans, GI17564282, Length=194, Percent_Identity=28.3505154639175, Blast_Score=71, Evalue=5e-13,
Organism=Caenorhabditis elegans, GI17565030, Length=280, Percent_Identity=27.1428571428571, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17538486, Length=267, Percent_Identity=26.5917602996255, Blast_Score=68, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI17555612, Length=206, Percent_Identity=26.2135922330097, Blast_Score=67, Evalue=7e-12,
Organism=Caenorhabditis elegans, GI17508895, Length=158, Percent_Identity=24.6835443037975, Blast_Score=65, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI71982365, Length=198, Percent_Identity=27.2727272727273, Blast_Score=65, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI72000259, Length=257, Percent_Identity=25.2918287937743, Blast_Score=64, Evalue=7e-11,
Organism=Caenorhabditis elegans, GI25152911, Length=226, Percent_Identity=24.3362831858407, Blast_Score=64, Evalue=9e-11,
Organism=Saccharomyces cerevisiae, GI6322861, Length=196, Percent_Identity=33.6734693877551, Blast_Score=89, Evalue=1e-18,
Organism=Saccharomyces cerevisiae, GI6324126, Length=252, Percent_Identity=26.984126984127, Blast_Score=88, Evalue=1e-18,
Organism=Saccharomyces cerevisiae, GI6320089, Length=181, Percent_Identity=30.3867403314917, Blast_Score=71, Evalue=2e-13,
Organism=Drosophila melanogaster, GI24639444, Length=253, Percent_Identity=31.2252964426877, Blast_Score=114, Evalue=5e-26,
Organism=Drosophila melanogaster, GI21355319, Length=251, Percent_Identity=25.8964143426295, Blast_Score=107, Evalue=1e-23,
Organism=Drosophila melanogaster, GI23397609, Length=255, Percent_Identity=29.0196078431373, Blast_Score=105, Evalue=2e-23,
Organism=Drosophila melanogaster, GI24640492, Length=202, Percent_Identity=31.6831683168317, Blast_Score=100, Evalue=2e-21,
Organism=Drosophila melanogaster, GI28571526, Length=247, Percent_Identity=27.1255060728745, Blast_Score=91, Evalue=6e-19,
Organism=Drosophila melanogaster, GI24643142, Length=253, Percent_Identity=25.296442687747, Blast_Score=88, Evalue=5e-18,
Organism=Drosophila melanogaster, GI21357041, Length=247, Percent_Identity=26.3157894736842, Blast_Score=87, Evalue=1e-17,
Organism=Drosophila melanogaster, GI24644339, Length=254, Percent_Identity=27.9527559055118, Blast_Score=86, Evalue=2e-17,
Organism=Drosophila melanogaster, GI24581726, Length=195, Percent_Identity=29.7435897435897, Blast_Score=81, Evalue=7e-16,
Organism=Drosophila melanogaster, GI24644337, Length=252, Percent_Identity=27.3809523809524, Blast_Score=78, Evalue=5e-15,
Organism=Drosophila melanogaster, GI281364892, Length=174, Percent_Identity=27.0114942528736, Blast_Score=78, Evalue=5e-15,
Organism=Drosophila melanogaster, GI24649181, Length=194, Percent_Identity=28.3505154639175, Blast_Score=77, Evalue=1e-14,
Organism=Drosophila melanogaster, GI21357673, Length=266, Percent_Identity=26.3157894736842, Blast_Score=77, Evalue=2e-14,
Organism=Drosophila melanogaster, GI21358495, Length=193, Percent_Identity=25.3886010362694, Blast_Score=77, Evalue=2e-14,
Organism=Drosophila melanogaster, GI17737361, Length=262, Percent_Identity=25.5725190839695, Blast_Score=75, Evalue=6e-14,
Organism=Drosophila melanogaster, GI24584748, Length=227, Percent_Identity=26.8722466960352, Blast_Score=71, Evalue=6e-13,
Organism=Drosophila melanogaster, GI161076933, Length=227, Percent_Identity=26.8722466960352, Blast_Score=71, Evalue=6e-13,
Organism=Drosophila melanogaster, GI21355631, Length=176, Percent_Identity=27.2727272727273, Blast_Score=71, Evalue=6e-13,
Organism=Drosophila melanogaster, GI24640442, Length=196, Percent_Identity=28.0612244897959, Blast_Score=71, Evalue=9e-13,
Organism=Drosophila melanogaster, GI18859837, Length=189, Percent_Identity=32.2751322751323, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI28571387, Length=199, Percent_Identity=28.643216080402, Blast_Score=69, Evalue=4e-12,
Organism=Drosophila melanogaster, GI24648693, Length=200, Percent_Identity=28.5, Blast_Score=68, Evalue=6e-12,
Organism=Drosophila melanogaster, GI21355889, Length=200, Percent_Identity=28.5, Blast_Score=68, Evalue=6e-12,
Organism=Drosophila melanogaster, GI221510726, Length=158, Percent_Identity=30.379746835443, Blast_Score=68, Evalue=8e-12,
Organism=Drosophila melanogaster, GI24584744, Length=234, Percent_Identity=25.2136752136752, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI28574402, Length=234, Percent_Identity=25.2136752136752, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI24641388, Length=201, Percent_Identity=29.3532338308458, Blast_Score=65, Evalue=6e-11,
Organism=Drosophila melanogaster, GI24641232, Length=206, Percent_Identity=28.6407766990291, Blast_Score=65, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: =1.1.1.69 [H]

Molecular weight: Translated: 28137; Mature: 28005

Theoretical pI: Translated: 6.53; Mature: 6.53

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTNLFDIKGKVALITGSTHGLGMAMAKGLGQAGATIVVNGNSSQEKIDNAVKELQSEGIN
CCCEEECCCEEEEEECCCCCHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCC
AVGYKFNVTEEQEVKDAVAKIQAEVGPIDILINNAGIIKRIPLLDMEVSDFREVVDIDLV
EEEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCCCEEECCCCCCCHHHHHHHHHHHHH
SPFIVSKHVAKGMIERRQGKIINICSMMSELGRNTVSAYAAAKGGLKMLTKNMATEWAKY
HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHHHEEE
NVQINGIGPGYFATEQTKPIRVDGHPFNDFIISRTPAAKWGDPSDLAGAAIFLSSKASDF
EEEEECCCCCCCCCCCCCCEEECCCCCCCEEEECCCCCCCCCCCHHCCEEEEEECCCCHH
VNGHILYVDGGILATIGKPSNEE
HCCEEEEECCCEEEEECCCCCCC
>Mature Secondary Structure 
TNLFDIKGKVALITGSTHGLGMAMAKGLGQAGATIVVNGNSSQEKIDNAVKELQSEGIN
CCEEECCCEEEEEECCCCCHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCC
AVGYKFNVTEEQEVKDAVAKIQAEVGPIDILINNAGIIKRIPLLDMEVSDFREVVDIDLV
EEEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCCCEEECCCCCCCHHHHHHHHHHHHH
SPFIVSKHVAKGMIERRQGKIINICSMMSELGRNTVSAYAAAKGGLKMLTKNMATEWAKY
HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHHHEEE
NVQINGIGPGYFATEQTKPIRVDGHPFNDFIISRTPAAKWGDPSDLAGAAIFLSSKASDF
EEEEECCCCCCCCCCCCCCEEECCCCCCCEEEECCCCCCCCCCCHHCCEEEEEECCCCHH
VNGHILYVDGGILATIGKPSNEE
HCCEEEEECCCEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]