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The map label for this gene is ylmE [H]

Identifier: 146301878

GI number: 146301878

Start: 4976654

End: 4977385

Strand: Direct

Name: ylmE [H]

Synonym: Fjoh_4142

Alternate gene names: 146301878

Gene position: 4976654-4977385 (Clockwise)

Preceding gene: 146301874

Following gene: 146301879

Centisome position: 81.63

GC content: 34.29

Gene sequence:

>732_bases
ATGAAAGAGAATATTATTTATAATTTAAAGCAGGTTCACGATCGTATCGAAAAAGCCTGTAAAGCTTCGGGAAGAGATAC
AGCAGATGTTCAGTTATTGCTGGCAACCAAAACAGTTCCTGCCGAAAGAATACGAATTGCCATTGAAGCCGGAGAAAATT
TAATTGGCGAAAATAAAATGCAGGAATTTCGGGATAAGGATTCAGAATTAAAAGATTTGAATATCGAACGTCATTTCATT
GGTCATCTGCAGACAAATAAAGTAAAAGATGTTTTGAAATATGTAAGCTGTATTCAATCTCTTGACCGATTAAGTCTGGC
AGAAGAATTACACAAACAGCTCCAGAAAGAAAACCGGGCTATTGCTGTTTTTGTTCAAGTTAATACCTCTTTTGAAGAAA
GTAAATTCGGTCTTTCTCCAACAGAAGTAATTCCGTTTATTAAAGAAATCAGGAAATATGATACTCTAAAAATCAAAGGA
TTAATGACAATTGGTTTATTAGATGTCGAGAAAGAAAAAATGCGTCCGTCGCTTCATCTGCTTAAAGAAATAAGAGATCA
AATTTATGAGGCTGAAATTGAAGGTTTAAGCAATTTAAAACTTTCAATGGGAATGTCTCAGGATTTAGAATTGGCTATTG
CCGAAGGTTCTAATCTGGTAAGAGTGGGAACTTCTATTTTTGGAAACCGCTTTTTAGGCAAAGAAATCTGGAACGAAAAT
ATTGCAGAATAA

Upstream 100 bases:

>100_bases
TCGGGCGTTTTCTGGTCTGGTTCTTTATTTATCTGGACTACTTTATATAGAAAAAACTGGATCTTTTTTATAATCCACTT
TACCTCTAACTTTGCTCATT

Downstream 100 bases:

>100_bases
AACCTAATTTTGCACCAAATAAAATATCAAATGAATCTGTACGAACTTGTTGTAAACGATACTGAAAAAGTTGCACTCGA
TGATCTGTTTTTCAGCCAAG

Product: alanine racemase domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 243; Mature: 243

Protein sequence:

>243_residues
MKENIIYNLKQVHDRIEKACKASGRDTADVQLLLATKTVPAERIRIAIEAGENLIGENKMQEFRDKDSELKDLNIERHFI
GHLQTNKVKDVLKYVSCIQSLDRLSLAEELHKQLQKENRAIAVFVQVNTSFEESKFGLSPTEVIPFIKEIRKYDTLKIKG
LMTIGLLDVEKEKMRPSLHLLKEIRDQIYEAEIEGLSNLKLSMGMSQDLELAIAEGSNLVRVGTSIFGNRFLGKEIWNEN
IAE

Sequences:

>Translated_243_residues
MKENIIYNLKQVHDRIEKACKASGRDTADVQLLLATKTVPAERIRIAIEAGENLIGENKMQEFRDKDSELKDLNIERHFI
GHLQTNKVKDVLKYVSCIQSLDRLSLAEELHKQLQKENRAIAVFVQVNTSFEESKFGLSPTEVIPFIKEIRKYDTLKIKG
LMTIGLLDVEKEKMRPSLHLLKEIRDQIYEAEIEGLSNLKLSMGMSQDLELAIAEGSNLVRVGTSIFGNRFLGKEIWNEN
IAE
>Mature_243_residues
MKENIIYNLKQVHDRIEKACKASGRDTADVQLLLATKTVPAERIRIAIEAGENLIGENKMQEFRDKDSELKDLNIERHFI
GHLQTNKVKDVLKYVSCIQSLDRLSLAEELHKQLQKENRAIAVFVQVNTSFEESKFGLSPTEVIPFIKEIRKYDTLKIKG
LMTIGLLDVEKEKMRPSLHLLKEIRDQIYEAEIEGLSNLKLSMGMSQDLELAIAEGSNLVRVGTSIFGNRFLGKEIWNEN
IAE

Specific function: Unknown

COG id: COG0325

COG function: function code R; Predicted enzyme with a TIM-barrel fold

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0001 family [H]

Homologues:

Organism=Homo sapiens, GI6005842, Length=239, Percent_Identity=34.3096234309623, Blast_Score=122, Evalue=2e-28,
Organism=Escherichia coli, GI1789321, Length=240, Percent_Identity=37.0833333333333, Blast_Score=132, Evalue=2e-32,
Organism=Caenorhabditis elegans, GI17533025, Length=213, Percent_Identity=33.3333333333333, Blast_Score=99, Evalue=2e-21,
Organism=Saccharomyces cerevisiae, GI6319435, Length=217, Percent_Identity=38.2488479262673, Blast_Score=107, Evalue=2e-24,
Organism=Drosophila melanogaster, GI45550861, Length=211, Percent_Identity=34.5971563981043, Blast_Score=104, Evalue=4e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001608
- InterPro:   IPR011078 [H]

Pfam domain/function: PF01168 Ala_racemase_N [H]

EC number: NA

Molecular weight: Translated: 27752; Mature: 27752

Theoretical pI: Translated: 6.38; Mature: 6.38

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKENIIYNLKQVHDRIEKACKASGRDTADVQLLLATKTVPAERIRIAIEAGENLIGENKM
CCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCHHHEEEEEECCCCCCCHHHH
QEFRDKDSELKDLNIERHFIGHLQTNKVKDVLKYVSCIQSLDRLSLAEELHKQLQKENRA
HHHHCCCCHHHHCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCE
IAVFVQVNTSFEESKFGLSPTEVIPFIKEIRKYDTLKIKGLMTIGLLDVEKEKMRPSLHL
EEEEEEECCCCCHHHCCCCHHHHHHHHHHHHHHCCEEEEEEEEEEEEECCHHHHCHHHHH
LKEIRDQIYEAEIEGLSNLKLSMGMSQDLELAIAEGSNLVRVGTSIFGNRFLGKEIWNEN
HHHHHHHHHHHHHHCHHCCHHHCCCCCCCEEEEECCCCEEEEHHHHHCCHHHHHHHHCCC
IAE
CCC
>Mature Secondary Structure
MKENIIYNLKQVHDRIEKACKASGRDTADVQLLLATKTVPAERIRIAIEAGENLIGENKM
CCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCHHHEEEEEECCCCCCCHHHH
QEFRDKDSELKDLNIERHFIGHLQTNKVKDVLKYVSCIQSLDRLSLAEELHKQLQKENRA
HHHHCCCCHHHHCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCE
IAVFVQVNTSFEESKFGLSPTEVIPFIKEIRKYDTLKIKGLMTIGLLDVEKEKMRPSLHL
EEEEEEECCCCCHHHCCCCHHHHHHHHHHHHHHCCEEEEEEEEEEEEECCHHHHCHHHHH
LKEIRDQIYEAEIEGLSNLKLSMGMSQDLELAIAEGSNLVRVGTSIFGNRFLGKEIWNEN
HHHHHHHHHHHHHHCHHCCHHHCCCCCCCEEEEECCCCEEEEHHHHHCCHHHHHHHHCCC
IAE
CCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]