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The map label for this gene is yfdE [H]

Identifier: 146301860

GI number: 146301860

Start: 4956793

End: 4957929

Strand: Direct

Name: yfdE [H]

Synonym: Fjoh_4124

Alternate gene names: 146301860

Gene position: 4956793-4957929 (Clockwise)

Preceding gene: 146301859

Following gene: 146301861

Centisome position: 81.3

GC content: 38.96

Gene sequence:

>1137_bases
ATGAAACCCTTAGAAGATTATTTAATAGTAGATTTTAGTCAGTTTCTTTCGGGTCCTTCGGCGAGTCTCCGCTTGGCCGA
TTTAGGCGCACGCGTTATAAAAATTGAAAAACCGGGAACTGGCGATATCTGCAGAACCTTATATACTTCTGACTTAATCA
TGAACGGCGAATCGTCTGTTTTTCATACCATAAACAGAAATAAAGAATCGTTTGCCATAGATTTTAAACAGCCGGAAGAA
CTTCAAAAATTAAAAAAATTATTGGCAAAAGCCGATGTTGTCATGCACAATTTCAGACCAGGCGTTATGGAACGCATTGG
TTTAAGTTATGATGATGTAAAAGCGATAAATCCTACGGTGGTTTACGCTTCGATTTCTGGTTTCGGGAATCATCCTGAAC
TTAAAGATTTACCGGGACAAGATTTGTTATTACAATCTTTAACGGCTTTAACCTGGCTGAGCGGCAATCAGGAAGACGGT
CCTGTGCCAATGGGATTGTCAATTGTTGATATGCTTGCGGGCGCGCATTTAGCACAAGGAATTTTAGCCGCTTTATATCG
AAAAGCATCACAAAATATTGGCGGAACGGTTCAGGTAAGTATGCTCGAATCTGCTTTTGATTTTCAGTTTGAAACGATTA
CCACTTTCTTTAATGACGGCGGTGAACTTCCTGTTCGTACCAAAACCAATAATGCACATGCTTATTTGGGCGCTCCTTAC
GGAATTTACGAAACTAAAAACGGTTATCTGGCTCTGGCAATGGGATCAATTCCCGTTTTGGCTTCATTGCTTAAATGTGA
TGAATTGTTACAATTCCCGGAAAATAAATTTACGCTTAGAGACGAAATTAAAAATATTCTGGCTTCTCACCTATTGACAC
AGGAAACCCAGTTTTGGCTGGATATTTTAGAACCTGCTGACATTTGGTGTGCGGGAGTTTTAAACTATGAACAGCTTTTC
AAAGAAGACGGTTTTAAAGTTTTAGAATTTACGCAGCAAGTCGAAATGCTCGACGGCTATTCGTATAAAACAACAAGATG
TCCTATAAAAATCGACGGCGAATACTTTACATCGACTAAAGGTTCTCCAAAATTAGGACAGGATAACGAGCGAATTATAA
AAGAATTTATAGCATAG

Upstream 100 bases:

>100_bases
AACAAAACGACGAATTAACGAATTAACGATTAAACAAATACAACGATTAAACAAATACAACGATTAAACGAATAAACAAC
AAAAACGGTTAAACAAAAAA

Downstream 100 bases:

>100_bases
ATATGGAAAAATTTAGAATCGCTGTTAGAAAATTTTCTCCTTTTGAAAGTACGCTGCAAAAGCTGTGGGATAACTTCTGT
CTGAAAAATAATATTCAGAT

Product: L-carnitine dehydratase/bile acid-inducible protein F

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 378; Mature: 378

Protein sequence:

>378_residues
MKPLEDYLIVDFSQFLSGPSASLRLADLGARVIKIEKPGTGDICRTLYTSDLIMNGESSVFHTINRNKESFAIDFKQPEE
LQKLKKLLAKADVVMHNFRPGVMERIGLSYDDVKAINPTVVYASISGFGNHPELKDLPGQDLLLQSLTALTWLSGNQEDG
PVPMGLSIVDMLAGAHLAQGILAALYRKASQNIGGTVQVSMLESAFDFQFETITTFFNDGGELPVRTKTNNAHAYLGAPY
GIYETKNGYLALAMGSIPVLASLLKCDELLQFPENKFTLRDEIKNILASHLLTQETQFWLDILEPADIWCAGVLNYEQLF
KEDGFKVLEFTQQVEMLDGYSYKTTRCPIKIDGEYFTSTKGSPKLGQDNERIIKEFIA

Sequences:

>Translated_378_residues
MKPLEDYLIVDFSQFLSGPSASLRLADLGARVIKIEKPGTGDICRTLYTSDLIMNGESSVFHTINRNKESFAIDFKQPEE
LQKLKKLLAKADVVMHNFRPGVMERIGLSYDDVKAINPTVVYASISGFGNHPELKDLPGQDLLLQSLTALTWLSGNQEDG
PVPMGLSIVDMLAGAHLAQGILAALYRKASQNIGGTVQVSMLESAFDFQFETITTFFNDGGELPVRTKTNNAHAYLGAPY
GIYETKNGYLALAMGSIPVLASLLKCDELLQFPENKFTLRDEIKNILASHLLTQETQFWLDILEPADIWCAGVLNYEQLF
KEDGFKVLEFTQQVEMLDGYSYKTTRCPIKIDGEYFTSTKGSPKLGQDNERIIKEFIA
>Mature_378_residues
MKPLEDYLIVDFSQFLSGPSASLRLADLGARVIKIEKPGTGDICRTLYTSDLIMNGESSVFHTINRNKESFAIDFKQPEE
LQKLKKLLAKADVVMHNFRPGVMERIGLSYDDVKAINPTVVYASISGFGNHPELKDLPGQDLLLQSLTALTWLSGNQEDG
PVPMGLSIVDMLAGAHLAQGILAALYRKASQNIGGTVQVSMLESAFDFQFETITTFFNDGGELPVRTKTNNAHAYLGAPY
GIYETKNGYLALAMGSIPVLASLLKCDELLQFPENKFTLRDEIKNILASHLLTQETQFWLDILEPADIWCAGVLNYEQLF
KEDGFKVLEFTQQVEMLDGYSYKTTRCPIKIDGEYFTSTKGSPKLGQDNERIIKEFIA

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI300863128, Length=387, Percent_Identity=27.906976744186, Blast_Score=161, Evalue=8e-40,
Organism=Homo sapiens, GI300863124, Length=330, Percent_Identity=28.7878787878788, Blast_Score=159, Evalue=6e-39,
Organism=Homo sapiens, GI300863126, Length=387, Percent_Identity=25.8397932816537, Blast_Score=130, Evalue=2e-30,
Organism=Homo sapiens, GI42794625, Length=391, Percent_Identity=26.8542199488491, Blast_Score=113, Evalue=3e-25,
Organism=Homo sapiens, GI266456254, Length=391, Percent_Identity=26.8542199488491, Blast_Score=113, Evalue=3e-25,
Organism=Homo sapiens, GI13376042, Length=330, Percent_Identity=24.5454545454545, Blast_Score=112, Evalue=4e-25,
Organism=Homo sapiens, GI266458397, Length=285, Percent_Identity=29.1228070175439, Blast_Score=104, Evalue=1e-22,
Organism=Homo sapiens, GI266458393, Length=263, Percent_Identity=28.1368821292776, Blast_Score=97, Evalue=2e-20,
Organism=Homo sapiens, GI42822893, Length=140, Percent_Identity=32.1428571428571, Blast_Score=86, Evalue=6e-17,
Organism=Homo sapiens, GI266458395, Length=140, Percent_Identity=32.1428571428571, Blast_Score=86, Evalue=7e-17,
Organism=Escherichia coli, GI87082093, Length=384, Percent_Identity=30.46875, Blast_Score=179, Evalue=2e-46,
Organism=Escherichia coli, GI1788717, Length=206, Percent_Identity=30.0970873786408, Blast_Score=99, Evalue=3e-22,
Organism=Escherichia coli, GI1786222, Length=392, Percent_Identity=22.4489795918367, Blast_Score=75, Evalue=7e-15,
Organism=Caenorhabditis elegans, GI32564160, Length=329, Percent_Identity=24.0121580547112, Blast_Score=74, Evalue=1e-13,
Organism=Drosophila melanogaster, GI24648431, Length=384, Percent_Identity=28.6458333333333, Blast_Score=176, Evalue=2e-44,
Organism=Drosophila melanogaster, GI24585488, Length=364, Percent_Identity=26.3736263736264, Blast_Score=108, Evalue=8e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 42044; Mature: 42044

Theoretical pI: Translated: 4.78; Mature: 4.78

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKPLEDYLIVDFSQFLSGPSASLRLADLGARVIKIEKPGTGDICRTLYTSDLIMNGESSV
CCCCHHHHEEEHHHHHCCCCCCEEEEECCCEEEEEECCCCCHHHHHHHHHHHEECCCCCE
FHTINRNKESFAIDFKQPEELQKLKKLLAKADVVMHNFRPGVMERIGLSYDDVKAINPTV
EEECCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCHHCCCCCEE
VYASISGFGNHPELKDLPGQDLLLQSLTALTWLSGNQEDGPVPMGLSIVDMLAGAHLAQG
EEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHH
ILAALYRKASQNIGGTVQVSMLESAFDFQFETITTFFNDGGELPVRTKTNNAHAYLGAPY
HHHHHHHHHHCCCCCEEEEEEHHHHHCCHHHHHHHHHCCCCCCCEEEECCCCEEEECCCC
GIYETKNGYLALAMGSIPVLASLLKCDELLQFPENKFTLRDEIKNILASHLLTQETQFWL
CCEECCCCEEEEEECCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
DILEPADIWCAGVLNYEQLFKEDGFKVLEFTQQVEMLDGYSYKTTRCPIKIDGEYFTSTK
HHCCCCHHHHHHHCCHHHHHHHCCCHHHHHHHHHHHHCCCCCEEEECCEEECCCEEECCC
GSPKLGQDNERIIKEFIA
CCCCCCCCHHHHHHHHCC
>Mature Secondary Structure
MKPLEDYLIVDFSQFLSGPSASLRLADLGARVIKIEKPGTGDICRTLYTSDLIMNGESSV
CCCCHHHHEEEHHHHHCCCCCCEEEEECCCEEEEEECCCCCHHHHHHHHHHHEECCCCCE
FHTINRNKESFAIDFKQPEELQKLKKLLAKADVVMHNFRPGVMERIGLSYDDVKAINPTV
EEECCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCHHCCCCCEE
VYASISGFGNHPELKDLPGQDLLLQSLTALTWLSGNQEDGPVPMGLSIVDMLAGAHLAQG
EEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHH
ILAALYRKASQNIGGTVQVSMLESAFDFQFETITTFFNDGGELPVRTKTNNAHAYLGAPY
HHHHHHHHHHCCCCCEEEEEEHHHHHCCHHHHHHHHHCCCCCCCEEEECCCCEEEECCCC
GIYETKNGYLALAMGSIPVLASLLKCDELLQFPENKFTLRDEIKNILASHLLTQETQFWL
CCEECCCCEEEEEECCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
DILEPADIWCAGVLNYEQLFKEDGFKVLEFTQQVEMLDGYSYKTTRCPIKIDGEYFTSTK
HHCCCCHHHHHHHCCHHHHHHHCCCHHHHHHHHHHHHCCCCCEEEECCEEECCCEEECCC
GSPKLGQDNERIIKEFIA
CCCCCCCCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]