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The map label for this gene is yfdE [H]

Identifier: 146301859

GI number: 146301859

Start: 4955509

End: 4956651

Strand: Direct

Name: yfdE [H]

Synonym: Fjoh_4123

Alternate gene names: 146301859

Gene position: 4955509-4956651 (Clockwise)

Preceding gene: 146301858

Following gene: 146301860

Centisome position: 81.28

GC content: 37.62

Gene sequence:

>1143_bases
ATGAAACCATTAGAAGGATTAATTGTATTAGAGTTCTGCCAGTTTTTGGCGGGTCCTTCTGCCGGATTAAAGTTAGCCGA
TTTAGGCGCGAGAATTATTAAAATTGAACGTCCCGTAAAAGGCGAAGCCTGCCGACAATTAAGCATCAAAGATCTTTTTG
TGGATGACAGCAGTCTTTTGTTTCACACAATTAACAGAAACAAAGAATCTTTTGCAGCCGATTTAAAAAATCCTGATGAT
TTAGTTTTAATTAAAAAACTAATCGAAAAAGCTGATATTATGACGCATAATTTCAGGCCAGGTGTAATGGAAAAAATCGG
TTTAGATTTTACTGCATCACTTGCGATTAATCCAAAAATAATATACGGAACCATAACAGGTTACGGCGATAAAGGTCCTT
GGGCAAAAAAACCGGGACAAGATTTGCTTTTACAGTCACTCTCTGGCTTAAGCTGGCTGAGCGGACGAAAAAGTCAGGGC
CCAGTTCCATTTGGTTTGGCTGTCGCCGATTTAATGTGCGGGAATCATTTCGTACAGGGAATTTTAGCCGCATTATTAAA
AAGAGCCAAAACCGGAAAAGGCGTTTTGGTTGAAGTGAGTTTACTGGAATCTATTTTGGATGTTCAGTTTGAAGCAATTA
CTTCTTTCTTAAATGATGGCGGGCAACAACCGGAACGAGGCGATATTAAAGGAAGCGCACACGCTTTTTTAAGCGCGCCT
TACGGAGTTTATAAAACACAAGACGATTATATTTCGCTGGCAATGGGCGATTTACTTTTTATAGGAAATACACTTGGAGT
CGATTTAAATCAATATGCAGCTAAACATCTCTGGTTTGAAAAAAGAGATGAAATCAGAATTCTTTTAGCCGATAAATTAG
CAGAACAAAAAGCAGATTATTGGTTAGAATTGCTTCAAAAACAAGGTATTTGGGCAGGAAAAGTTCTCAATTATGAAACT
TTAGACCAACAGCAATTTGTTAATGAATTACACTTAAAACAAACCGTAAAAAATTCTGACGGCGAAACTTTGATTACAAC
CCGAAGTCCAATTCAGCTTGACGGTAAAATTTTAAGCAGCACAAAAGCAGCTCCAAAAGTGGGCGAAGATAATGCAGTAA
TACACAAAGAGTTTATTCAGTAA

Upstream 100 bases:

>100_bases
GCGATGTAGTTCGTGATTATTTAATGAACGGCGGTGACGAAGAACTTGTTTTAGATGCATTAAATGCGCTTTATGCTAAA
TCTTTAAAACTGCAAAATTC

Downstream 100 bases:

>100_bases
ACTGTTGAATCTTTGAATAGTTGATTCGTTTAATCGTGTTGAACAAAACGACGAATTAACGAATTAACGATTAAACAAAT
ACAACGATTAAACAAATACA

Product: L-carnitine dehydratase/bile acid-inducible protein F

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 380; Mature: 380

Protein sequence:

>380_residues
MKPLEGLIVLEFCQFLAGPSAGLKLADLGARIIKIERPVKGEACRQLSIKDLFVDDSSLLFHTINRNKESFAADLKNPDD
LVLIKKLIEKADIMTHNFRPGVMEKIGLDFTASLAINPKIIYGTITGYGDKGPWAKKPGQDLLLQSLSGLSWLSGRKSQG
PVPFGLAVADLMCGNHFVQGILAALLKRAKTGKGVLVEVSLLESILDVQFEAITSFLNDGGQQPERGDIKGSAHAFLSAP
YGVYKTQDDYISLAMGDLLFIGNTLGVDLNQYAAKHLWFEKRDEIRILLADKLAEQKADYWLELLQKQGIWAGKVLNYET
LDQQQFVNELHLKQTVKNSDGETLITTRSPIQLDGKILSSTKAAPKVGEDNAVIHKEFIQ

Sequences:

>Translated_380_residues
MKPLEGLIVLEFCQFLAGPSAGLKLADLGARIIKIERPVKGEACRQLSIKDLFVDDSSLLFHTINRNKESFAADLKNPDD
LVLIKKLIEKADIMTHNFRPGVMEKIGLDFTASLAINPKIIYGTITGYGDKGPWAKKPGQDLLLQSLSGLSWLSGRKSQG
PVPFGLAVADLMCGNHFVQGILAALLKRAKTGKGVLVEVSLLESILDVQFEAITSFLNDGGQQPERGDIKGSAHAFLSAP
YGVYKTQDDYISLAMGDLLFIGNTLGVDLNQYAAKHLWFEKRDEIRILLADKLAEQKADYWLELLQKQGIWAGKVLNYET
LDQQQFVNELHLKQTVKNSDGETLITTRSPIQLDGKILSSTKAAPKVGEDNAVIHKEFIQ
>Mature_380_residues
MKPLEGLIVLEFCQFLAGPSAGLKLADLGARIIKIERPVKGEACRQLSIKDLFVDDSSLLFHTINRNKESFAADLKNPDD
LVLIKKLIEKADIMTHNFRPGVMEKIGLDFTASLAINPKIIYGTITGYGDKGPWAKKPGQDLLLQSLSGLSWLSGRKSQG
PVPFGLAVADLMCGNHFVQGILAALLKRAKTGKGVLVEVSLLESILDVQFEAITSFLNDGGQQPERGDIKGSAHAFLSAP
YGVYKTQDDYISLAMGDLLFIGNTLGVDLNQYAAKHLWFEKRDEIRILLADKLAEQKADYWLELLQKQGIWAGKVLNYET
LDQQQFVNELHLKQTVKNSDGETLITTRSPIQLDGKILSSTKAAPKVGEDNAVIHKEFIQ

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI300863128, Length=387, Percent_Identity=29.7157622739018, Blast_Score=185, Evalue=7e-47,
Organism=Homo sapiens, GI300863124, Length=328, Percent_Identity=32.6219512195122, Blast_Score=184, Evalue=1e-46,
Organism=Homo sapiens, GI13376042, Length=328, Percent_Identity=29.5731707317073, Blast_Score=148, Evalue=8e-36,
Organism=Homo sapiens, GI300863126, Length=387, Percent_Identity=25.5813953488372, Blast_Score=138, Evalue=8e-33,
Organism=Homo sapiens, GI42794625, Length=388, Percent_Identity=26.0309278350515, Blast_Score=115, Evalue=9e-26,
Organism=Homo sapiens, GI266456254, Length=388, Percent_Identity=26.0309278350515, Blast_Score=115, Evalue=9e-26,
Organism=Homo sapiens, GI266458397, Length=205, Percent_Identity=30.7317073170732, Blast_Score=102, Evalue=4e-22,
Organism=Homo sapiens, GI266458393, Length=205, Percent_Identity=30.7317073170732, Blast_Score=102, Evalue=5e-22,
Organism=Homo sapiens, GI42822893, Length=146, Percent_Identity=30.1369863013699, Blast_Score=83, Evalue=4e-16,
Organism=Homo sapiens, GI266458395, Length=146, Percent_Identity=30.1369863013699, Blast_Score=83, Evalue=4e-16,
Organism=Escherichia coli, GI87082093, Length=322, Percent_Identity=30.7453416149068, Blast_Score=174, Evalue=6e-45,
Organism=Escherichia coli, GI1788717, Length=206, Percent_Identity=34.4660194174757, Blast_Score=112, Evalue=3e-26,
Organism=Caenorhabditis elegans, GI32564160, Length=347, Percent_Identity=27.6657060518732, Blast_Score=100, Evalue=1e-21,
Organism=Caenorhabditis elegans, GI115535051, Length=358, Percent_Identity=25.1396648044693, Blast_Score=81, Evalue=7e-16,
Organism=Drosophila melanogaster, GI24648431, Length=374, Percent_Identity=29.9465240641711, Blast_Score=178, Evalue=6e-45,
Organism=Drosophila melanogaster, GI24585488, Length=334, Percent_Identity=28.4431137724551, Blast_Score=115, Evalue=5e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 41873; Mature: 41873

Theoretical pI: Translated: 6.89; Mature: 6.89

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKPLEGLIVLEFCQFLAGPSAGLKLADLGARIIKIERPVKGEACRQLSIKDLFVDDSSLL
CCCCHHHHHHHHHHHHCCCCCCCCHHHCCCEEEEECCCCCCHHHHHCCHHHEEECCCCEE
FHTINRNKESFAADLKNPDDLVLIKKLIEKADIMTHNFRPGVMEKIGLDFTASLAINPKI
EEECCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCEEEEEEECCEE
IYGTITGYGDKGPWAKKPGQDLLLQSLSGLSWLSGRKSQGPVPFGLAVADLMCGNHFVQG
EEEEEECCCCCCCCCCCCCHHHHHHHHCCCHHHCCCCCCCCCCHHHHHHHHHHHHHHHHH
ILAALLKRAKTGKGVLVEVSLLESILDVQFEAITSFLNDGGQQPERGDIKGSAHAFLSAP
HHHHHHHHCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEECC
YGVYKTQDDYISLAMGDLLFIGNTLGVDLNQYAAKHLWFEKRDEIRILLADKLAEQKADY
CCCEECCCCHHHHHHHHHHEECCCCCCCHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHH
WLELLQKQGIWAGKVLNYETLDQQQFVNELHLKQTVKNSDGETLITTRSPIQLDGKILSS
HHHHHHHCCCCEEEECCHHHCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCEECCHHHHC
TKAAPKVGEDNAVIHKEFIQ
CCCCCCCCCCCCCHHHHHCC
>Mature Secondary Structure
MKPLEGLIVLEFCQFLAGPSAGLKLADLGARIIKIERPVKGEACRQLSIKDLFVDDSSLL
CCCCHHHHHHHHHHHHCCCCCCCCHHHCCCEEEEECCCCCCHHHHHCCHHHEEECCCCEE
FHTINRNKESFAADLKNPDDLVLIKKLIEKADIMTHNFRPGVMEKIGLDFTASLAINPKI
EEECCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCEEEEEEECCEE
IYGTITGYGDKGPWAKKPGQDLLLQSLSGLSWLSGRKSQGPVPFGLAVADLMCGNHFVQG
EEEEEECCCCCCCCCCCCCHHHHHHHHCCCHHHCCCCCCCCCCHHHHHHHHHHHHHHHHH
ILAALLKRAKTGKGVLVEVSLLESILDVQFEAITSFLNDGGQQPERGDIKGSAHAFLSAP
HHHHHHHHCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEECC
YGVYKTQDDYISLAMGDLLFIGNTLGVDLNQYAAKHLWFEKRDEIRILLADKLAEQKADY
CCCEECCCCHHHHHHHHHHEECCCCCCCHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHH
WLELLQKQGIWAGKVLNYETLDQQQFVNELHLKQTVKNSDGETLITTRSPIQLDGKILSS
HHHHHHHCCCCEEEECCHHHCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCEECCHHHHC
TKAAPKVGEDNAVIHKEFIQ
CCCCCCCCCCCCCHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]