BacMap

Definition	Flavobacterium johnsoniae UW101 chromosome, complete genome.
Accession	NC_009441
Length	6,096,872

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The map label for this gene is fabG [H]

Identifier: 146301854

GI number: 146301854

Start: 4949929

End: 4950726

Strand: Reverse

Name: fabG [H]

Synonym: Fjoh_4118

Alternate gene names: 146301854

Gene position: 4950726-4949929 (Counterclockwise)

Preceding gene: 146301855

Following gene: 146301853

Centisome position: 81.2

GC content: 37.47

Gene sequence:

>798_bases
ATGGATTTAAATTTAAAAAATAAAATTGTCGTTGTTTCCGGTTCAGCTGGAAAGGAAGGCAGTATTGGAGAAACAATTAT
TAACCGAATTGCAGACGAAGGTGCGATTCCGGTTTTGGTTGATAGAAATGCAAGAGGTTTCGCTTACGCGGAAGCTTTCC
AAAAAAGAGGAATTGATTCTTTATTTGTGCAGACAGATGTAACTGATCCTGTAGAAATCGAAAATGCGGTTAAAACAATT
GTGGCAAAATACGGAAGAATCGACGCTGTCATCAACAATGTTGGTGTAAACGACGGCGCAGGTTTGGATGCTTCTTACGA
GGAATTTATGGATTCTTTAAAACTGAATGTAGTAAGTTACTTTTTACTGGTTAAATACGCGCTCCCGTACTTAAAAGAAT
CAAAAGGAAATATCTTAAATATTGGTTCAAAAGTAGCTTTAACAGGGCAGGGCGGAACTTCTGGTTATGCTGCAGCAAAA
GGCGGCGTTTTAGGACTTACAAGAGAATGGGCGGTAGATTTAATCCAATTCGGAATTCGTTCTAATGCTATTATTATTGC
TGAAAGTTATACTCCTGCATACGAAGACTGGATTAAAACTTTGGCAGATGGAGAAACCGTTCTAAAGAAAATCAACAAAA
GTATTCCGTTTGAAGGCAGAATGACCAAAACAGAAGAAATTGCAGATACGGCTCTTTTTATTATTTCTGATCGTTCATCT
CATACTACAGGACAATTTGTTTTTGTAGATGGCGGTTACGTGCATTTAGATCGTGCTTTAATCAACGATGTAAACTAA

Upstream 100 bases:

>100_bases
TGTGTATTTATGCAAGTGAAACGCCTTTGAGCGGTTTTAAAATCTATGTTTCTATGTGTTTAAAAAATCTAACTATTATT
AAACTTTAATAACCACGAAA

Downstream 100 bases:

>100_bases
TTCAGGATGAATAACCGAATTGATTCTCATCAGCATTTTTGGAAATTTGATCCCGTTAGAGACAGCTGGATTGATGAAAG
TATGTCGAAAATTCAAAGAG

Product: short chain dehydrogenase

Products: NA

Alternate protein names: 3-ketoacyl-acyl carrier protein reductase [H]

Number of amino acids: Translated: 265; Mature: 265

Protein sequence:

>265_residues
MDLNLKNKIVVVSGSAGKEGSIGETIINRIADEGAIPVLVDRNARGFAYAEAFQKRGIDSLFVQTDVTDPVEIENAVKTI
VAKYGRIDAVINNVGVNDGAGLDASYEEFMDSLKLNVVSYFLLVKYALPYLKESKGNILNIGSKVALTGQGGTSGYAAAK
GGVLGLTREWAVDLIQFGIRSNAIIIAESYTPAYEDWIKTLADGETVLKKINKSIPFEGRMTKTEEIADTALFIISDRSS
HTTGQFVFVDGGYVHLDRALINDVN

Sequences:

>Translated_265_residues
MDLNLKNKIVVVSGSAGKEGSIGETIINRIADEGAIPVLVDRNARGFAYAEAFQKRGIDSLFVQTDVTDPVEIENAVKTI
VAKYGRIDAVINNVGVNDGAGLDASYEEFMDSLKLNVVSYFLLVKYALPYLKESKGNILNIGSKVALTGQGGTSGYAAAK
GGVLGLTREWAVDLIQFGIRSNAIIIAESYTPAYEDWIKTLADGETVLKKINKSIPFEGRMTKTEEIADTALFIISDRSS
HTTGQFVFVDGGYVHLDRALINDVN
>Mature_265_residues
MDLNLKNKIVVVSGSAGKEGSIGETIINRIADEGAIPVLVDRNARGFAYAEAFQKRGIDSLFVQTDVTDPVEIENAVKTI
VAKYGRIDAVINNVGVNDGAGLDASYEEFMDSLKLNVVSYFLLVKYALPYLKESKGNILNIGSKVALTGQGGTSGYAAAK
GGVLGLTREWAVDLIQFGIRSNAIIIAESYTPAYEDWIKTLADGETVLKKINKSIPFEGRMTKTEEIADTALFIISDRSS
HTTGQFVFVDGGYVHLDRALINDVN

Specific function: Unknown

COG id: COG1028

COG function: function code IQR; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI59889578, Length=223, Percent_Identity=30.4932735426009, Blast_Score=115, Evalue=5e-26,
Organism=Homo sapiens, GI40254992, Length=244, Percent_Identity=29.5081967213115, Blast_Score=92, Evalue=4e-19,
Organism=Homo sapiens, GI66933014, Length=195, Percent_Identity=33.3333333333333, Blast_Score=92, Evalue=7e-19,
Organism=Homo sapiens, GI4758504, Length=272, Percent_Identity=27.5735294117647, Blast_Score=83, Evalue=2e-16,
Organism=Homo sapiens, GI15277342, Length=261, Percent_Identity=28.3524904214559, Blast_Score=78, Evalue=7e-15,
Organism=Homo sapiens, GI83715985, Length=272, Percent_Identity=25.3676470588235, Blast_Score=77, Evalue=2e-14,
Organism=Homo sapiens, GI32483357, Length=256, Percent_Identity=28.515625, Blast_Score=75, Evalue=7e-14,
Organism=Homo sapiens, GI31542939, Length=194, Percent_Identity=28.8659793814433, Blast_Score=73, Evalue=3e-13,
Organism=Homo sapiens, GI5031737, Length=250, Percent_Identity=27.2, Blast_Score=73, Evalue=3e-13,
Organism=Homo sapiens, GI19923817, Length=273, Percent_Identity=26.007326007326, Blast_Score=68, Evalue=7e-12,
Organism=Homo sapiens, GI224922801, Length=175, Percent_Identity=28, Blast_Score=66, Evalue=3e-11,
Organism=Escherichia coli, GI87082100, Length=236, Percent_Identity=33.4745762711864, Blast_Score=103, Evalue=1e-23,
Organism=Escherichia coli, GI1787335, Length=255, Percent_Identity=30.1960784313725, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI1790717, Length=257, Percent_Identity=28.4046692607004, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1786812, Length=225, Percent_Identity=28, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1788459, Length=202, Percent_Identity=30.6930693069307, Blast_Score=79, Evalue=2e-16,
Organism=Escherichia coli, GI1787905, Length=256, Percent_Identity=28.125, Blast_Score=78, Evalue=5e-16,
Organism=Escherichia coli, GI87082160, Length=260, Percent_Identity=26.9230769230769, Blast_Score=75, Evalue=3e-15,
Organism=Escherichia coli, GI1789057, Length=182, Percent_Identity=29.1208791208791, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1789208, Length=179, Percent_Identity=29.0502793296089, Blast_Score=64, Evalue=9e-12,
Organism=Caenorhabditis elegans, GI71994600, Length=177, Percent_Identity=32.7683615819209, Blast_Score=87, Evalue=1e-17,
Organism=Caenorhabditis elegans, GI17560150, Length=262, Percent_Identity=30.9160305343511, Blast_Score=85, Evalue=4e-17,
Organism=Caenorhabditis elegans, GI17555706, Length=254, Percent_Identity=30.7086614173228, Blast_Score=84, Evalue=6e-17,
Organism=Caenorhabditis elegans, GI17562990, Length=258, Percent_Identity=30.2325581395349, Blast_Score=84, Evalue=1e-16,
Organism=Caenorhabditis elegans, GI25147288, Length=260, Percent_Identity=30.3846153846154, Blast_Score=83, Evalue=1e-16,
Organism=Caenorhabditis elegans, GI17559104, Length=262, Percent_Identity=29.3893129770992, Blast_Score=83, Evalue=1e-16,
Organism=Caenorhabditis elegans, GI71994604, Length=187, Percent_Identity=31.0160427807487, Blast_Score=80, Evalue=7e-16,
Organism=Caenorhabditis elegans, GI17562910, Length=269, Percent_Identity=29.368029739777, Blast_Score=79, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI17562904, Length=265, Percent_Identity=29.0566037735849, Blast_Score=78, Evalue=6e-15,
Organism=Caenorhabditis elegans, GI17560332, Length=273, Percent_Identity=27.1062271062271, Blast_Score=75, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI193204405, Length=260, Percent_Identity=28.8461538461538, Blast_Score=75, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI72000259, Length=264, Percent_Identity=29.9242424242424, Blast_Score=73, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17563726, Length=265, Percent_Identity=31.6981132075472, Blast_Score=73, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17560220, Length=267, Percent_Identity=27.3408239700375, Blast_Score=72, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI17561402, Length=236, Percent_Identity=28.3898305084746, Blast_Score=72, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI17562906, Length=261, Percent_Identity=27.9693486590038, Blast_Score=71, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI17562908, Length=268, Percent_Identity=29.4776119402985, Blast_Score=71, Evalue=5e-13,
Organism=Caenorhabditis elegans, GI17551412, Length=274, Percent_Identity=28.4671532846715, Blast_Score=71, Evalue=6e-13,
Organism=Caenorhabditis elegans, GI17538480, Length=269, Percent_Identity=29.7397769516729, Blast_Score=70, Evalue=9e-13,
Organism=Caenorhabditis elegans, GI17538486, Length=262, Percent_Identity=26.3358778625954, Blast_Score=70, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17538182, Length=208, Percent_Identity=26.4423076923077, Blast_Score=70, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17544670, Length=264, Percent_Identity=26.1363636363636, Blast_Score=68, Evalue=6e-12,
Organism=Caenorhabditis elegans, GI17560676, Length=255, Percent_Identity=24.3137254901961, Blast_Score=66, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17531453, Length=267, Percent_Identity=27.3408239700375, Blast_Score=66, Evalue=2e-11,
Organism=Saccharomyces cerevisiae, GI6324126, Length=197, Percent_Identity=35.0253807106599, Blast_Score=83, Evalue=4e-17,
Organism=Drosophila melanogaster, GI23397609, Length=257, Percent_Identity=31.1284046692607, Blast_Score=101, Evalue=4e-22,
Organism=Drosophila melanogaster, GI28571526, Length=257, Percent_Identity=30.7392996108949, Blast_Score=96, Evalue=2e-20,
Organism=Drosophila melanogaster, GI21357041, Length=259, Percent_Identity=28.1853281853282, Blast_Score=85, Evalue=4e-17,
Organism=Drosophila melanogaster, GI24639444, Length=254, Percent_Identity=28.740157480315, Blast_Score=83, Evalue=2e-16,
Organism=Drosophila melanogaster, GI21355319, Length=261, Percent_Identity=27.5862068965517, Blast_Score=81, Evalue=9e-16,
Organism=Drosophila melanogaster, GI17737361, Length=262, Percent_Identity=27.8625954198473, Blast_Score=76, Evalue=2e-14,
Organism=Drosophila melanogaster, GI24644339, Length=255, Percent_Identity=26.2745098039216, Blast_Score=76, Evalue=3e-14,
Organism=Drosophila melanogaster, GI24643142, Length=255, Percent_Identity=25.8823529411765, Blast_Score=75, Evalue=6e-14,
Organism=Drosophila melanogaster, GI21357673, Length=249, Percent_Identity=28.1124497991968, Blast_Score=66, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24644337, Length=236, Percent_Identity=28.3898305084746, Blast_Score=66, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011284
- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: =1.1.1.100 [H]

Molecular weight: Translated: 28633; Mature: 28633

Theoretical pI: Translated: 4.77; Mature: 4.77

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDLNLKNKIVVVSGSAGKEGSIGETIINRIADEGAIPVLVDRNARGFAYAEAFQKRGIDS
CCCCCCCEEEEEECCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHCCCCE
LFVQTDVTDPVEIENAVKTIVAKYGRIDAVINNVGVNDGAGLDASYEEFMDSLKLNVVSY
EEEEECCCCCHHHHHHHHHHHHHHCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHH
FLLVKYALPYLKESKGNILNIGSKVALTGQGGTSGYAAAKGGVLGLTREWAVDLIQFGIR
HHHHHHHHHHHHCCCCCEEECCCEEEEECCCCCCCCHHCCCCEEECHHHHHHHHHHHCCC
SNAIIIAESYTPAYEDWIKTLADGETVLKKINKSIPFEGRMTKTEEIADTALFIISDRSS
CCEEEEEECCCCHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCHHHHHCEEEEEEECCCC
HTTGQFVFVDGGYVHLDRALINDVN
CCCCEEEEEECCEEEECHHHHCCCC
>Mature Secondary Structure
MDLNLKNKIVVVSGSAGKEGSIGETIINRIADEGAIPVLVDRNARGFAYAEAFQKRGIDS
CCCCCCCEEEEEECCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHCCCCE
LFVQTDVTDPVEIENAVKTIVAKYGRIDAVINNVGVNDGAGLDASYEEFMDSLKLNVVSY
EEEEECCCCCHHHHHHHHHHHHHHCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHH
FLLVKYALPYLKESKGNILNIGSKVALTGQGGTSGYAAAKGGVLGLTREWAVDLIQFGIR
HHHHHHHHHHHHCCCCCEEECCCEEEEECCCCCCCCHHCCCCEEECHHHHHHHHHHHCCC
SNAIIIAESYTPAYEDWIKTLADGETVLKKINKSIPFEGRMTKTEEIADTALFIISDRSS
CCEEEEEECCCCHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCHHHHHCEEEEEEECCCC
HTTGQFVFVDGGYVHLDRALINDVN
CCCCEEEEEECCEEEECHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10360571 [H]