| Definition | Flavobacterium johnsoniae UW101 chromosome, complete genome. |
|---|---|
| Accession | NC_009441 |
| Length | 6,096,872 |
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The map label for this gene is 146301823
Identifier: 146301823
GI number: 146301823
Start: 4893231
End: 4894148
Strand: Reverse
Name: 146301823
Synonym: Fjoh_4087
Alternate gene names: NA
Gene position: 4894148-4893231 (Counterclockwise)
Preceding gene: 146301824
Following gene: 146301822
Centisome position: 80.27
GC content: 34.86
Gene sequence:
>918_bases ATGAAAAAAATATTCATCATAATAACCCTTTCACTTTTCGCGATTAGTTATTCGCAGAAAAAGAAAGATTTATATCTTTT TACGTCGTTTAGAGAACCTGCAACAGAAGGTTTATATTTGGCCTATAGCGAAGACGGTTACAATTGGAAAGGATTAGTAG GATCATTTTTAAAACCCGAAATCGGAGCCAGCAAAATTATGCGTGATCCGTCCATCACAAAAGGAGCAGACGGAACCTAT CACATGGTTTGGACAACAGATTGGAAAGGTGGGAACGGTTTTGGATATGCAAGTTCAAAAGACCTGATTCATTGGTCGCA ACAGGAATATATTCCAGTAATGAAAAACGAACCAGAAGTGGTAAACGTTTGGGCGCCGGAGATTTTTTATGATGATGTCA AAAAAGAATACATTATTATTTGGGCATCAACAATTCCGTTCCGATTTGAAAAAGGAGTTGAAGAAGAGAAAAATAACCAC AGAATGTATTATGTAACGACAAAAGATTTTAAAACTTTTTCAGATACAAAACTATACTACGATCCAGGTTTCAGTGTAAT TGATTGTGTGATTGTCAAAAAAGGAAAGAAAGATTATGTTTTGGTTTTGAAAGACAATACAAGACCCATGCGAAACATAA AAGTAGCTTTCGGGAAATCGCCTTTAGGTCCGTTTGAAAAGAGTTCTGAACCGTTAACAGAATATTTATCAGAAGGCCCG ACAGTAGTGAAAGTCGATAAAAACTGGTTATTGTATTATGATAATTACGGTTCAAAAAATTATAAAGCGTTAAGCACAAC AGATTTTGTTCATTTTGAAGATGTATCATCCAAAATAAGCCTTCCCGAAGGACACAAACACGGAACGATTACAACAATCT CTGAAGACGTTTTAAAAGGATTAATTGAAAGAAAATAA
Upstream 100 bases:
>100_bases AATGCGTTCCTGCAAGGTTTTCAAAACCTTGTAGGTTTAGTTTGTGCACATAGAAATACCTACGAGGTTTTGGAAACCTC GCAGGAAAAGAAAACAAGAA
Downstream 100 bases:
>100_bases AAGAATTTATTCTCAAAAAGGCTCTTTTGCCTGAACAGAATATTTTAAAATTATTTTTATCAGCAAAAGCCCCAGAGGGG TAAAATATTTATAGAAATTC
Product: hypothetical protein
Products: NA
Alternate protein names: Glycoside Hydrolase Family; Alpha-N-Arabinofuranosidase; Glycosyl Hydrolase Family; Beta-Galactosidase I; Endo-1 4-Beta-Xylanase D; Arabinofuranosidase; Glycosylhydrolase; Pectinesterase; Beta-Galactosidase; Beta-Xylosidase; Alpha L-Arabinofuranosidase; Beta-Fructosidase Superfamily Protein; Xylosidase/Arabinofuranosidase; Hydrolase; Alpha-L-Arabinofuranosidase B
Number of amino acids: Translated: 305; Mature: 305
Protein sequence:
>305_residues MKKIFIIITLSLFAISYSQKKKDLYLFTSFREPATEGLYLAYSEDGYNWKGLVGSFLKPEIGASKIMRDPSITKGADGTY HMVWTTDWKGGNGFGYASSKDLIHWSQQEYIPVMKNEPEVVNVWAPEIFYDDVKKEYIIIWASTIPFRFEKGVEEEKNNH RMYYVTTKDFKTFSDTKLYYDPGFSVIDCVIVKKGKKDYVLVLKDNTRPMRNIKVAFGKSPLGPFEKSSEPLTEYLSEGP TVVKVDKNWLLYYDNYGSKNYKALSTTDFVHFEDVSSKISLPEGHKHGTITTISEDVLKGLIERK
Sequences:
>Translated_305_residues MKKIFIIITLSLFAISYSQKKKDLYLFTSFREPATEGLYLAYSEDGYNWKGLVGSFLKPEIGASKIMRDPSITKGADGTY HMVWTTDWKGGNGFGYASSKDLIHWSQQEYIPVMKNEPEVVNVWAPEIFYDDVKKEYIIIWASTIPFRFEKGVEEEKNNH RMYYVTTKDFKTFSDTKLYYDPGFSVIDCVIVKKGKKDYVLVLKDNTRPMRNIKVAFGKSPLGPFEKSSEPLTEYLSEGP TVVKVDKNWLLYYDNYGSKNYKALSTTDFVHFEDVSSKISLPEGHKHGTITTISEDVLKGLIERK >Mature_305_residues MKKIFIIITLSLFAISYSQKKKDLYLFTSFREPATEGLYLAYSEDGYNWKGLVGSFLKPEIGASKIMRDPSITKGADGTY HMVWTTDWKGGNGFGYASSKDLIHWSQQEYIPVMKNEPEVVNVWAPEIFYDDVKKEYIIIWASTIPFRFEKGVEEEKNNH RMYYVTTKDFKTFSDTKLYYDPGFSVIDCVIVKKGKKDYVLVLKDNTRPMRNIKVAFGKSPLGPFEKSSEPLTEYLSEGP TVVKVDKNWLLYYDNYGSKNYKALSTTDFVHFEDVSSKISLPEGHKHGTITTISEDVLKGLIERK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 35098; Mature: 35098
Theoretical pI: Translated: 8.65; Mature: 8.65
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKIFIIITLSLFAISYSQKKKDLYLFTSFREPATEGLYLAYSEDGYNWKGLVGSFLKPE CCEEEEEEEEEEHHEECCCCCCEEEEEEECCCCCCCCEEEEECCCCCCCHHHHHHHCCCC IGASKIMRDPSITKGADGTYHMVWTTDWKGGNGFGYASSKDLIHWSQQEYIPVMKNEPEV CCHHHHHCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCEEECCCCCCCEECCCCCE VNVWAPEIFYDDVKKEYIIIWASTIPFRFEKGVEEEKNNHRMYYVTTKDFKTFSDTKLYY EEEECCHHHHHCCCCEEEEEEECCCCCHHHCCCCCCCCCCEEEEEECCCCCCCCCCEEEE DPGFSVIDCVIVKKGKKDYVLVLKDNTRPMRNIKVAFGKSPLGPFEKSSEPLTEYLSEGP CCCCCEEEEEEEECCCCCEEEEEECCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHCCC TVVKVDKNWLLYYDNYGSKNYKALSTTDFVHFEDVSSKISLPEGHKHGTITTISEDVLKG EEEEECCCEEEEEECCCCCCEEEEECCCEEEEECCCCCCCCCCCCCCCEEEEEHHHHHHH LIERK HHCCC >Mature Secondary Structure MKKIFIIITLSLFAISYSQKKKDLYLFTSFREPATEGLYLAYSEDGYNWKGLVGSFLKPE CCEEEEEEEEEEHHEECCCCCCEEEEEEECCCCCCCCEEEEECCCCCCCHHHHHHHCCCC IGASKIMRDPSITKGADGTYHMVWTTDWKGGNGFGYASSKDLIHWSQQEYIPVMKNEPEV CCHHHHHCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCEEECCCCCCCEECCCCCE VNVWAPEIFYDDVKKEYIIIWASTIPFRFEKGVEEEKNNHRMYYVTTKDFKTFSDTKLYY EEEECCHHHHHCCCCEEEEEEECCCCCHHHCCCCCCCCCCEEEEEECCCCCCCCCCEEEE DPGFSVIDCVIVKKGKKDYVLVLKDNTRPMRNIKVAFGKSPLGPFEKSSEPLTEYLSEGP CCCCCEEEEEEEECCCCCEEEEEECCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHCCC TVVKVDKNWLLYYDNYGSKNYKALSTTDFVHFEDVSSKISLPEGHKHGTITTISEDVLKG EEEEECCCEEEEEECCCCCCEEEEECCCEEEEECCCCCCCCCCCCCCCEEEEEHHHHHHH LIERK HHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA