| Definition | Flavobacterium johnsoniae UW101 chromosome, complete genome. |
|---|---|
| Accession | NC_009441 |
| Length | 6,096,872 |
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The map label for this gene is 146301822
Identifier: 146301822
GI number: 146301822
Start: 4891073
End: 4892935
Strand: Reverse
Name: 146301822
Synonym: Fjoh_4086
Alternate gene names: NA
Gene position: 4892935-4891073 (Counterclockwise)
Preceding gene: 146301823
Following gene: 146301821
Centisome position: 80.25
GC content: 38.33
Gene sequence:
>1863_bases ATGATTACTTTCCAAAACATAAAAACCAACATTATCACAGCCACAATTATATTGGCTTGCACCGCTGTAAATGCACAAAA CGACACTGTGCGTTATGTTGGAAAAACACTTTCAAACATTGATTACCATCACGGACAATTAAGCCCCGCGGTTGGAGTTC ACGCCACGCAAATCATGCGTGCAAGCCGCGAACATCCTGAAAAAGCGGATGGTTTTGGATGGACATACAATCACCAGCCG ATGATGGCTTATTGGAATAATACATTTTATTTACATTATTTAAGCGATCCTTCGGGCGAACATATTCCGCCAAGCCAAAC TTTATTAATGACTTCTAAAGATGGTGTAACGTGGACAAAACCAGAAGTTATTTTTCCAATTTATAGAATTCCTGACGGAT GGAAGAAAGAAGGCGTTGAAGGCGTTGCTAAAAATCTTGATGCAATTATGCACCAAAGAATGGGCTTTTATACCTCAAAA GACAACCGACTTTTTGCGTTAGCGTATTACGGAATTGCAATGGATGAAAAAGATGATCCAAACGATGGAAAAGGAATTGG ACGCGTCATTCGTGAAATCAAGAAAGACGGTAGTTTCGGCGAAATCTATTTCATTAGATACAACAAAACTTGGGACAAAT CGAAATCGAAATTCCCATTTTATACCGCATCAAAAGATAAAGGTTTGAAAAAGGCTTGTGAAGAAATTTTATCAGAACCA TTGGTTTTACAGCAATGGGTGGAAGAAGCCGATCGTGACGATGAATTGATTCCGTTACAAAAACCATATAAAGCGTTTAG TTATTATCATTTACCAAACGGAAATGTAGTGGGTTTATGGAAACATGCTTTAACTTCTATTAGTAAGGATGGAGGAAAAT CATGGGATTATATGCCGTTGCGTGCTCTTGGATTTGTAAACAGCAATGCTAAAATCTGGGGACAAAAAACGTCAGACAAT CGTTATGCAACGCTTTATAACCCGTCAGAATATCGTTGGCCTTTGGCAATTTCAACAAGTGATGATGGATTAAATTATAA AGATTTATTATTAGTTCATGGAGAAGTTAGTCCGATGCGTTACGGCGGAAACTACAAATCGGCAGGTCCTCAATACGTTC GTGGAATTACAGAGAAAAATGGAACTCCGCCAGACGGAAAAATCTGGGTAGGATACAGTATGAATAAAGAGGATATTTGG GTGGCATCGATTCCCGTTCCTGTAACTTCTGTGGTTACCGAAAATGTAAATGATGTTTTCAATAATCTTCCAGACGGACA AGAATTAAAATTGTGGAATACGTATGACCTTTCTTGGGCATCAACCAAAATCGAAAAGAAAGTCGATGGTAAAAAATGGC TGACGTTAAGAGATCAGGATTATTTTGATTATTCTCGTGCTGAAAGAGTGATTCCTTTCGCATCAAAAATGGAAGCGGTT TTCACCGTAAAACCAGAGCAAAACAATCACGGTTTATTGCAGGTTGAATTCCAAAATAAACAAGGCTTGCCTTCTGTAAG ATTGATTTTTGATTCGGATGGAGAATTAAAGGTAAAAAATGGTGCGCGTTTGAGTTCGGTTACAAAATACGAAGCAAACA AAGCATATACAATCACAGTTAAATTAGATGCTAAAAACCGTCAGTACACTATAAAAGTAAACGATGGAAAAGAATCAACA AAGATATTTTATGCGCCAACAGACGGTTTTGAGCGAATTATGTTCCGCACAGGAGAACAGAGACATTCGCCAGATCCGGA CACAGCACCGGACACAGACGATTATGACGACCTGCCTCAAACAGGAAAATTAATTCCAGAAGCAGTATTCAATATCGAAT CTTTGATAACTAGAAAGTTGTAA
Upstream 100 bases:
>100_bases TTCATTCTTTGCTATAAATATTTCGCTTCTCCGAAGCTTACAAAATGAAGCTTCCTTTTTAGACAGCTTTTTTATTCAGG ATTAAAAAAATAAAATATCA
Downstream 100 bases:
>100_bases AAATTATGGAACACAGATGAGACGGATTCGCTACCGCGAAGACGCAGATTAACACAGATTTTATATTTTAGAGTAAATAA AAAAATCCGTTTTATCCACG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 620; Mature: 620
Protein sequence:
>620_residues MITFQNIKTNIITATIILACTAVNAQNDTVRYVGKTLSNIDYHHGQLSPAVGVHATQIMRASREHPEKADGFGWTYNHQP MMAYWNNTFYLHYLSDPSGEHIPPSQTLLMTSKDGVTWTKPEVIFPIYRIPDGWKKEGVEGVAKNLDAIMHQRMGFYTSK DNRLFALAYYGIAMDEKDDPNDGKGIGRVIREIKKDGSFGEIYFIRYNKTWDKSKSKFPFYTASKDKGLKKACEEILSEP LVLQQWVEEADRDDELIPLQKPYKAFSYYHLPNGNVVGLWKHALTSISKDGGKSWDYMPLRALGFVNSNAKIWGQKTSDN RYATLYNPSEYRWPLAISTSDDGLNYKDLLLVHGEVSPMRYGGNYKSAGPQYVRGITEKNGTPPDGKIWVGYSMNKEDIW VASIPVPVTSVVTENVNDVFNNLPDGQELKLWNTYDLSWASTKIEKKVDGKKWLTLRDQDYFDYSRAERVIPFASKMEAV FTVKPEQNNHGLLQVEFQNKQGLPSVRLIFDSDGELKVKNGARLSSVTKYEANKAYTITVKLDAKNRQYTIKVNDGKEST KIFYAPTDGFERIMFRTGEQRHSPDPDTAPDTDDYDDLPQTGKLIPEAVFNIESLITRKL
Sequences:
>Translated_620_residues MITFQNIKTNIITATIILACTAVNAQNDTVRYVGKTLSNIDYHHGQLSPAVGVHATQIMRASREHPEKADGFGWTYNHQP MMAYWNNTFYLHYLSDPSGEHIPPSQTLLMTSKDGVTWTKPEVIFPIYRIPDGWKKEGVEGVAKNLDAIMHQRMGFYTSK DNRLFALAYYGIAMDEKDDPNDGKGIGRVIREIKKDGSFGEIYFIRYNKTWDKSKSKFPFYTASKDKGLKKACEEILSEP LVLQQWVEEADRDDELIPLQKPYKAFSYYHLPNGNVVGLWKHALTSISKDGGKSWDYMPLRALGFVNSNAKIWGQKTSDN RYATLYNPSEYRWPLAISTSDDGLNYKDLLLVHGEVSPMRYGGNYKSAGPQYVRGITEKNGTPPDGKIWVGYSMNKEDIW VASIPVPVTSVVTENVNDVFNNLPDGQELKLWNTYDLSWASTKIEKKVDGKKWLTLRDQDYFDYSRAERVIPFASKMEAV FTVKPEQNNHGLLQVEFQNKQGLPSVRLIFDSDGELKVKNGARLSSVTKYEANKAYTITVKLDAKNRQYTIKVNDGKEST KIFYAPTDGFERIMFRTGEQRHSPDPDTAPDTDDYDDLPQTGKLIPEAVFNIESLITRKL >Mature_620_residues MITFQNIKTNIITATIILACTAVNAQNDTVRYVGKTLSNIDYHHGQLSPAVGVHATQIMRASREHPEKADGFGWTYNHQP MMAYWNNTFYLHYLSDPSGEHIPPSQTLLMTSKDGVTWTKPEVIFPIYRIPDGWKKEGVEGVAKNLDAIMHQRMGFYTSK DNRLFALAYYGIAMDEKDDPNDGKGIGRVIREIKKDGSFGEIYFIRYNKTWDKSKSKFPFYTASKDKGLKKACEEILSEP LVLQQWVEEADRDDELIPLQKPYKAFSYYHLPNGNVVGLWKHALTSISKDGGKSWDYMPLRALGFVNSNAKIWGQKTSDN RYATLYNPSEYRWPLAISTSDDGLNYKDLLLVHGEVSPMRYGGNYKSAGPQYVRGITEKNGTPPDGKIWVGYSMNKEDIW VASIPVPVTSVVTENVNDVFNNLPDGQELKLWNTYDLSWASTKIEKKVDGKKWLTLRDQDYFDYSRAERVIPFASKMEAV FTVKPEQNNHGLLQVEFQNKQGLPSVRLIFDSDGELKVKNGARLSSVTKYEANKAYTITVKLDAKNRQYTIKVNDGKEST KIFYAPTDGFERIMFRTGEQRHSPDPDTAPDTDDYDDLPQTGKLIPEAVFNIESLITRKL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 70565; Mature: 70565
Theoretical pI: Translated: 7.78; Mature: 7.78
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MITFQNIKTNIITATIILACTAVNAQNDTVRYVGKTLSNIDYHHGQLSPAVGVHATQIMR CEEECCCCHHHHHEEEEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHH ASREHPEKADGFGWTYNHQPMMAYWNNTFYLHYLSDPSGEHIPPSQTLLMTSKDGVTWTK HHHCCCCCCCCCCEEECCCCEEEEECCEEEEEEECCCCCCCCCCCCEEEEECCCCCEECC PEVIFPIYRIPDGWKKEGVEGVAKNLDAIMHQRMGFYTSKDNRLFALAYYGIAMDEKDDP CCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCEECCCCCEEEEEEEEEEECCCCCC NDGKGIGRVIREIKKDGSFGEIYFIRYNKTWDKSKSKFPFYTASKDKGLKKACEEILSEP CCCHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCEEECCCCCCHHHHHHHHHHCC LVLQQWVEEADRDDELIPLQKPYKAFSYYHLPNGNVVGLWKHALTSISKDGGKSWDYMPL HHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCCEEEEHHHHHHHHCCCCCCCCCCCCE RALGFVNSNAKIWGQKTSDNRYATLYNPSEYRWPLAISTSDDGLNYKDLLLVHGEVSPMR EEEEEECCCCEEEEEECCCCEEEEEECCCCEEEEEEEECCCCCCCCEEEEEEECCCCCEE YGGNYKSAGPQYVRGITEKNGTPPDGKIWVGYSMNKEDIWVASIPVPVTSVVTENVNDVF ECCCCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCEEEEECCCCHHHHHHHHHHHHH NNLPDGQELKLWNTYDLSWASTKIEKKVDGKKWLTLRDQDYFDYSRAERVIPFASKMEAV HCCCCCCEEEEEEEECCCHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHCCCCHHCCCEE FTVKPEQNNHGLLQVEFQNKQGLPSVRLIFDSDGELKVKNGARLSSVTKYEANKAYTITV EEECCCCCCCCEEEEEECCCCCCCEEEEEECCCCCEEECCCCCCCCEEEECCCCEEEEEE KLDAKNRQYTIKVNDGKESTKIFYAPTDGFERIMFRTGEQRHSPDPDTAPDTDDYDDLPQ EEECCCCEEEEEECCCCCCCEEEEECCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC TGKLIPEAVFNIESLITRKL CCCHHHHHHHHHHHHHHHCC >Mature Secondary Structure MITFQNIKTNIITATIILACTAVNAQNDTVRYVGKTLSNIDYHHGQLSPAVGVHATQIMR CEEECCCCHHHHHEEEEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHH ASREHPEKADGFGWTYNHQPMMAYWNNTFYLHYLSDPSGEHIPPSQTLLMTSKDGVTWTK HHHCCCCCCCCCCEEECCCCEEEEECCEEEEEEECCCCCCCCCCCCEEEEECCCCCEECC PEVIFPIYRIPDGWKKEGVEGVAKNLDAIMHQRMGFYTSKDNRLFALAYYGIAMDEKDDP CCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCEECCCCCEEEEEEEEEEECCCCCC NDGKGIGRVIREIKKDGSFGEIYFIRYNKTWDKSKSKFPFYTASKDKGLKKACEEILSEP CCCHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCEEECCCCCCHHHHHHHHHHCC LVLQQWVEEADRDDELIPLQKPYKAFSYYHLPNGNVVGLWKHALTSISKDGGKSWDYMPL HHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCCEEEEHHHHHHHHCCCCCCCCCCCCE RALGFVNSNAKIWGQKTSDNRYATLYNPSEYRWPLAISTSDDGLNYKDLLLVHGEVSPMR EEEEEECCCCEEEEEECCCCEEEEEECCCCEEEEEEEECCCCCCCCEEEEEEECCCCCEE YGGNYKSAGPQYVRGITEKNGTPPDGKIWVGYSMNKEDIWVASIPVPVTSVVTENVNDVF ECCCCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCEEEEECCCCHHHHHHHHHHHHH NNLPDGQELKLWNTYDLSWASTKIEKKVDGKKWLTLRDQDYFDYSRAERVIPFASKMEAV HCCCCCCEEEEEEEECCCHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHCCCCHHCCCEE FTVKPEQNNHGLLQVEFQNKQGLPSVRLIFDSDGELKVKNGARLSSVTKYEANKAYTITV EEECCCCCCCCEEEEEECCCCCCCEEEEEECCCCCEEECCCCCCCCEEEECCCCEEEEEE KLDAKNRQYTIKVNDGKESTKIFYAPTDGFERIMFRTGEQRHSPDPDTAPDTDDYDDLPQ EEECCCCEEEEEECCCCCCCEEEEECCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC TGKLIPEAVFNIESLITRKL CCCHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA