| Definition | Flavobacterium johnsoniae UW101 chromosome, complete genome. |
|---|---|
| Accession | NC_009441 |
| Length | 6,096,872 |
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The map label for this gene is fct [H]
Identifier: 146301775
GI number: 146301775
Start: 4818465
End: 4820909
Strand: Direct
Name: fct [H]
Synonym: Fjoh_4039
Alternate gene names: 146301775
Gene position: 4818465-4820909 (Clockwise)
Preceding gene: 146301774
Following gene: 146301776
Centisome position: 79.03
GC content: 36.07
Gene sequence:
>2445_bases ATGAAGTTTACTTATTTATTTTTGATGCTTGCCTTTTTTACCATAGGCCAGGCTCAAAATGCTAAAATTACCGGAAGGAT AACTTCCGAAAACAATGAAGCCGTTTCTTATGCTTCTGTCTCAATCAAAAGTCCAAAAAAGAACACAACCTCTGATGATA AAGGAAATTTTGAAATCAGCAATCTAACACCAGGAAATTATACTATTTATTTTTCGGCAATGGGTTTTTCTGTTCAGGAA AAAACCGTAGAACTGCATGAAAATGAAAACCTTGAACTTTCTATCTCTTTACAGGAAAACATTAATACACTGCAGACTGT AGAAATTACAGGACGAAAAGAAAAATCATATAAAAACACAAAATCGTTTATTGGAGCTAAAACAGAAATCGCTCTAAAAG ATCTTCCACAGGCAGTTTCGTATGCTACAAAAGAATTAATTGCAGATCAGGGATCCATTCGCGTAGGCGAAGTTGTCAAA AATTTCAGCGGTGTAAGCCAGTTTACTTTTTATGATGATATTTCGATAAGAGGTTTTAGAATTAACGGAGGAAGCAACAC GCAATTGCTTAACGGAATGAGAACTTCGACTGGTTTCTGGAAACAGCCTCTTGCCAACTATCTTGAGCGTGTAGAGGTTT TAAAAGGTCCTTCTTCTGCTCTATTTGGAAATGCATCTCCTGGAGGAGTTTTAAACCGTGTTACAAAAAAACCATTAGAT CAGGCTGCAAACAGCGTAAGCTTTTCTACAGGAAGTTTTAATACTTTAAGAGCTTTAGCTGATTTTACAGGTCCGTTAAC CGAAGATAAATCACTTTTGTACCGTTTGAACTTGGGTTACGAAAATGCCAATTCTTTTAGAGATTTACAATTCGATAAAA ATATTGTAATTGCTCCTTCTCTTTCGTTCCTTCCAAATGATAAAACAAGCGTTAACTTTGACTTAATTTACACGGGTTCA AAAAGTAACTTAGACCGCGGACAGTCGACTTATGAAAATAATTTGTATTCGACTAAAATTTCAAATTCTTTAAACTCTAC AAATGATTATTTAAATGAAGAAACGTATATCGTTACAACGTCATTAAATCATCAGTTTACAGATCGTTTGTCATTTTCGG CTTCGTACATTCGTACAGGTTACACAGAAGATCTTTTGGAACACCGCGGTGCTAATAAATATGCTTCTGCCGGAGACGGA TCTACAATTCCAACAGCAATCGAAATGCAGGTTTTTCAGCGTAAACGTAAGCGTTATATTGACAATCTTTCTGCTTTCTT TAACTATCAGGCAAAAACAGGAGCTTTAGACCACAATTTAATTGCAGGTTACGATTATGCTCAGGAACAAGTTCCGTCTG GAGGTTCGCAGTTACAAGCAACGGGATATAGAAATGCTGCAAACAATGGTTCTATTGCAACGTATGATCCGGCAAAAAAG AATCTGTATTTGTTAGATTCTAAAGGAAATCCTGTACCAAACGTGGCGCATTTCGATTTAACAAATCCAATGGCTTCACA GCAGTTAAAAGACATGAGCAAATATTTCTATGTTGCCCGTCCGTTTGATCCAACCTATTATTCGTTGTATGGAGTTTATC TTCAGGATCATATTAAATTTGGTGCTTTTCAGGCTTTAATTGGTGTTCGTTATGATGAATACAGCGATAAAGAAAATTAT AAAAAGGCAACTGAAAAGAAAGTAAAACAGCATTCATTCCTTCCTCGTTTTGGATTAACTTATACACTTAACCCAAATAT CAACTTATACGGAACTTATGTAAAAGGATACAACCCGCAGACCGCTTCTTCATTATCAAACCCAAATGCAGGAGGACCGT TTGATCCGTTAGAAAGTAATATGGTCGAGTTTGGAGGAAAATCTTCGTGGTTTAAAGAAAAACTTTTTGTGACAGTAGCT TTGTTTAAAATCCAGCAGAAAAACACTTTATATCCTGCCAACGATCCAACAAATCCAGATTTAATGAGATCAATTGGTCA GGAAGAATCAAAAGGTATTGAAATTGATGTAAACGGAAGCATAACGCGCAACTGGAGTATTTCGGCAGCGTATTCATACA ATGAAGCTGCCATTACAGAAAGCCCTGTAGATTCTGAAATTGGAAGACAAAAACCAAATACACCAAAACAGCAGGGAAAT GTCTGGACACGTTATAACTTTACAGACGGTGCTTTAAAAGATTTTGGCGTTGCTTTTGGAAGTAATTTTGTAACAACCCG TAACTTAAGCCAGACAGTAACACAGACCATTCCGGGTTATACTTTATTTAATGCTGCTTTGTATTACAACATTAATAAAT TTAAAATTCAGCTGAATGCTAACAACATAACCAATAAAACGTATTGGGTTGGAGGTTACGATTATATTCGTTTATTCCCT GGTGCTCCTTCGAACTGGCTGTTAACACTTGGATACTCATTTTAA
Upstream 100 bases:
>100_bases ATCGATTTCTTAAAATTAATATGAATTGTGATAGTTATTTATTTGTATTTATTCTAAATAAACATAGATTTGCGGTCTAA AATTAAAATAATCGCCCGCC
Downstream 100 bases:
>100_bases TAAATGCTTTATTTATATTTGAAAACATTTTTGGACTATCTATTATGAATAAAACGTTTAAGAAAAATATTGGCTTATTA CATCTTTGGCTCGGACTTGC
Product: TonB-dependent siderophore receptor
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 814; Mature: 814
Protein sequence:
>814_residues MKFTYLFLMLAFFTIGQAQNAKITGRITSENNEAVSYASVSIKSPKKNTTSDDKGNFEISNLTPGNYTIYFSAMGFSVQE KTVELHENENLELSISLQENINTLQTVEITGRKEKSYKNTKSFIGAKTEIALKDLPQAVSYATKELIADQGSIRVGEVVK NFSGVSQFTFYDDISIRGFRINGGSNTQLLNGMRTSTGFWKQPLANYLERVEVLKGPSSALFGNASPGGVLNRVTKKPLD QAANSVSFSTGSFNTLRALADFTGPLTEDKSLLYRLNLGYENANSFRDLQFDKNIVIAPSLSFLPNDKTSVNFDLIYTGS KSNLDRGQSTYENNLYSTKISNSLNSTNDYLNEETYIVTTSLNHQFTDRLSFSASYIRTGYTEDLLEHRGANKYASAGDG STIPTAIEMQVFQRKRKRYIDNLSAFFNYQAKTGALDHNLIAGYDYAQEQVPSGGSQLQATGYRNAANNGSIATYDPAKK NLYLLDSKGNPVPNVAHFDLTNPMASQQLKDMSKYFYVARPFDPTYYSLYGVYLQDHIKFGAFQALIGVRYDEYSDKENY KKATEKKVKQHSFLPRFGLTYTLNPNINLYGTYVKGYNPQTASSLSNPNAGGPFDPLESNMVEFGGKSSWFKEKLFVTVA LFKIQQKNTLYPANDPTNPDLMRSIGQEESKGIEIDVNGSITRNWSISAAYSYNEAAITESPVDSEIGRQKPNTPKQQGN VWTRYNFTDGALKDFGVAFGSNFVTTRNLSQTVTQTIPGYTLFNAALYYNINKFKIQLNANNITNKTYWVGGYDYIRLFP GAPSNWLLTLGYSF
Sequences:
>Translated_814_residues MKFTYLFLMLAFFTIGQAQNAKITGRITSENNEAVSYASVSIKSPKKNTTSDDKGNFEISNLTPGNYTIYFSAMGFSVQE KTVELHENENLELSISLQENINTLQTVEITGRKEKSYKNTKSFIGAKTEIALKDLPQAVSYATKELIADQGSIRVGEVVK NFSGVSQFTFYDDISIRGFRINGGSNTQLLNGMRTSTGFWKQPLANYLERVEVLKGPSSALFGNASPGGVLNRVTKKPLD QAANSVSFSTGSFNTLRALADFTGPLTEDKSLLYRLNLGYENANSFRDLQFDKNIVIAPSLSFLPNDKTSVNFDLIYTGS KSNLDRGQSTYENNLYSTKISNSLNSTNDYLNEETYIVTTSLNHQFTDRLSFSASYIRTGYTEDLLEHRGANKYASAGDG STIPTAIEMQVFQRKRKRYIDNLSAFFNYQAKTGALDHNLIAGYDYAQEQVPSGGSQLQATGYRNAANNGSIATYDPAKK NLYLLDSKGNPVPNVAHFDLTNPMASQQLKDMSKYFYVARPFDPTYYSLYGVYLQDHIKFGAFQALIGVRYDEYSDKENY KKATEKKVKQHSFLPRFGLTYTLNPNINLYGTYVKGYNPQTASSLSNPNAGGPFDPLESNMVEFGGKSSWFKEKLFVTVA LFKIQQKNTLYPANDPTNPDLMRSIGQEESKGIEIDVNGSITRNWSISAAYSYNEAAITESPVDSEIGRQKPNTPKQQGN VWTRYNFTDGALKDFGVAFGSNFVTTRNLSQTVTQTIPGYTLFNAALYYNINKFKIQLNANNITNKTYWVGGYDYIRLFP GAPSNWLLTLGYSF >Mature_814_residues MKFTYLFLMLAFFTIGQAQNAKITGRITSENNEAVSYASVSIKSPKKNTTSDDKGNFEISNLTPGNYTIYFSAMGFSVQE KTVELHENENLELSISLQENINTLQTVEITGRKEKSYKNTKSFIGAKTEIALKDLPQAVSYATKELIADQGSIRVGEVVK NFSGVSQFTFYDDISIRGFRINGGSNTQLLNGMRTSTGFWKQPLANYLERVEVLKGPSSALFGNASPGGVLNRVTKKPLD QAANSVSFSTGSFNTLRALADFTGPLTEDKSLLYRLNLGYENANSFRDLQFDKNIVIAPSLSFLPNDKTSVNFDLIYTGS KSNLDRGQSTYENNLYSTKISNSLNSTNDYLNEETYIVTTSLNHQFTDRLSFSASYIRTGYTEDLLEHRGANKYASAGDG STIPTAIEMQVFQRKRKRYIDNLSAFFNYQAKTGALDHNLIAGYDYAQEQVPSGGSQLQATGYRNAANNGSIATYDPAKK NLYLLDSKGNPVPNVAHFDLTNPMASQQLKDMSKYFYVARPFDPTYYSLYGVYLQDHIKFGAFQALIGVRYDEYSDKENY KKATEKKVKQHSFLPRFGLTYTLNPNINLYGTYVKGYNPQTASSLSNPNAGGPFDPLESNMVEFGGKSSWFKEKLFVTVA LFKIQQKNTLYPANDPTNPDLMRSIGQEESKGIEIDVNGSITRNWSISAAYSYNEAAITESPVDSEIGRQKPNTPKQQGN VWTRYNFTDGALKDFGVAFGSNFVTTRNLSQTVTQTIPGYTLFNAALYYNINKFKIQLNANNITNKTYWVGGYDYIRLFP GAPSNWLLTLGYSF
Specific function: Involved in the initial step of iron uptake by binding chrysobactin, an iron chelatin siderophore that allows the bacteria to extract iron from the environment [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell outer membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the tonB-dependent receptor family [H]
Homologues:
Organism=Escherichia coli, GI1786344, Length=729, Percent_Identity=24.2798353909465, Blast_Score=156, Evalue=5e-39, Organism=Escherichia coli, GI1787344, Length=726, Percent_Identity=23.8292011019284, Blast_Score=129, Evalue=7e-31, Organism=Escherichia coli, GI1787024, Length=256, Percent_Identity=26.5625, Blast_Score=74, Evalue=3e-14,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012910 - InterPro: IPR000531 - InterPro: IPR010916 - InterPro: IPR010105 [H]
Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]
EC number: NA
Molecular weight: Translated: 90892; Mature: 90892
Theoretical pI: Translated: 9.16; Mature: 9.16
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 1.1 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKFTYLFLMLAFFTIGQAQNAKITGRITSENNEAVSYASVSIKSPKKNTTSDDKGNFEIS CCHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCEEEEEEEEECCCCCCCCCCCCCCEEEE NLTPGNYTIYFSAMGFSVQEKTVELHENENLELSISLQENINTLQTVEITGRKEKSYKNT EECCCCEEEEEEEECCEEEHHEEEECCCCCEEEEEEEHHCCCEEEEEEEECCCCHHHHHH KSFIGAKTEIALKDLPQAVSYATKELIADQGSIRVGEVVKNFSGVSQFTFYDDISIRGFR HHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHHHCCCCCEEEEEECCEEEEEE INGGSNTQLLNGMRTSTGFWKQPLANYLERVEVLKGPSSALFGNASPGGVLNRVTKKPLD ECCCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHCCCCCCCCHHHHHHHHHHHH QAANSVSFSTGSFNTLRALADFTGPLTEDKSLLYRLNLGYENANSFRDLQFDKNIVIAPS HHHCCEEECCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCCEECCCCEEEECC LSFLPNDKTSVNFDLIYTGSKSNLDRGQSTYENNLYSTKISNSLNSTNDYLNEETYIVTT CCCCCCCCCEEEEEEEEECCCCCCCCCCHHHHCCCEEEHHCCCCCCCHHHCCCCEEEEEE SLNHQFTDRLSFSASYIRTGYTEDLLEHRGANKYASAGDGSTIPTAIEMQVFQRKRKRYI ECCCHHHHHHHCCHHHHHCCCHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH DNLSAFFNYQAKTGALDHNLIAGYDYAQEQVPSGGSQLQATGYRNAANNGSIATYDPAKK HHHHHHEECCCCCCCCCCCEEECCCHHHHHCCCCCCEEEECCCCCCCCCCCEEEECCCCC NLYLLDSKGNPVPNVAHFDLTNPMASQQLKDMSKYFYVARPFDPTYYSLYGVYLQDHIKF CEEEEECCCCCCCCEEEEECCCCHHHHHHHHHHHHEEEECCCCCCCEEEEEEHHHHHHHH GAFQALIGVRYDEYSDKENYKKATEKKVKQHSFLPRFGLTYTLNPNINLYGTYVKGYNPQ HHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCEEEEEEEECCCCC TASSLSNPNAGGPFDPLESNMVEFGGKSSWFKEKLFVTVALFKIQQKNTLYPANDPTNPD HHHHCCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHEEEEEEEECCCCCCCCCCCCCCHH LMRSIGQEESKGIEIDVNGSITRNWSISAAYSYNEAAITESPVDSEIGRQKPNTPKQQGN HHHHCCCHHHCCEEEEECCCEEECEEEEEEEECCCCCCCCCCCCHHHCCCCCCCCHHCCC VWTRYNFTDGALKDFGVAFGSNFVTTRNLSQTVTQTIPGYTLFNAALYYNINKFKIQLNA EEEEEECCCCCHHHHHHHHCCCEEEECCHHHHHHHHCCCCEEEEEEEEEEEEEEEEEEEC NNITNKTYWVGGYDYIRLFPGAPSNWLLTLGYSF CCCCCCEEEECCEEEEEEECCCCCCEEEEEECCC >Mature Secondary Structure MKFTYLFLMLAFFTIGQAQNAKITGRITSENNEAVSYASVSIKSPKKNTTSDDKGNFEIS CCHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCEEEEEEEEECCCCCCCCCCCCCCEEEE NLTPGNYTIYFSAMGFSVQEKTVELHENENLELSISLQENINTLQTVEITGRKEKSYKNT EECCCCEEEEEEEECCEEEHHEEEECCCCCEEEEEEEHHCCCEEEEEEEECCCCHHHHHH KSFIGAKTEIALKDLPQAVSYATKELIADQGSIRVGEVVKNFSGVSQFTFYDDISIRGFR HHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHHHCCCCCEEEEEECCEEEEEE INGGSNTQLLNGMRTSTGFWKQPLANYLERVEVLKGPSSALFGNASPGGVLNRVTKKPLD ECCCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHCCCCCCCCHHHHHHHHHHHH QAANSVSFSTGSFNTLRALADFTGPLTEDKSLLYRLNLGYENANSFRDLQFDKNIVIAPS HHHCCEEECCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCCEECCCCEEEECC LSFLPNDKTSVNFDLIYTGSKSNLDRGQSTYENNLYSTKISNSLNSTNDYLNEETYIVTT CCCCCCCCCEEEEEEEEECCCCCCCCCCHHHHCCCEEEHHCCCCCCCHHHCCCCEEEEEE SLNHQFTDRLSFSASYIRTGYTEDLLEHRGANKYASAGDGSTIPTAIEMQVFQRKRKRYI ECCCHHHHHHHCCHHHHHCCCHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH DNLSAFFNYQAKTGALDHNLIAGYDYAQEQVPSGGSQLQATGYRNAANNGSIATYDPAKK HHHHHHEECCCCCCCCCCCEEECCCHHHHHCCCCCCEEEECCCCCCCCCCCEEEECCCCC NLYLLDSKGNPVPNVAHFDLTNPMASQQLKDMSKYFYVARPFDPTYYSLYGVYLQDHIKF CEEEEECCCCCCCCEEEEECCCCHHHHHHHHHHHHEEEECCCCCCCEEEEEEHHHHHHHH GAFQALIGVRYDEYSDKENYKKATEKKVKQHSFLPRFGLTYTLNPNINLYGTYVKGYNPQ HHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCEEEEEEEECCCCC TASSLSNPNAGGPFDPLESNMVEFGGKSSWFKEKLFVTVALFKIQQKNTLYPANDPTNPD HHHHCCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHEEEEEEEECCCCCCCCCCCCCCHH LMRSIGQEESKGIEIDVNGSITRNWSISAAYSYNEAAITESPVDSEIGRQKPNTPKQQGN HHHHCCCHHHCCEEEEECCCEEECEEEEEEEECCCCCCCCCCCCHHHCCCCCCCCHHCCC VWTRYNFTDGALKDFGVAFGSNFVTTRNLSQTVTQTIPGYTLFNAALYYNINKFKIQLNA EEEEEECCCCCHHHHHHHHCCCEEEECCHHHHHHHHCCCCEEEEEEEEEEEEEEEEEEEC NNITNKTYWVGGYDYIRLFPGAPSNWLLTLGYSF CCCCCCEEEECCEEEEEEECCCCCCEEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8576065 [H]