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The map label for this gene is xerD [H]

Identifier: 146301441

GI number: 146301441

Start: 4390931

End: 4391797

Strand: Reverse

Name: xerD [H]

Synonym: Fjoh_3699

Alternate gene names: 146301441

Gene position: 4391797-4390931 (Counterclockwise)

Preceding gene: 146301442

Following gene: 146301438

Centisome position: 72.03

GC content: 44.52

Gene sequence:

>867_bases
ATGACTAAAATAACAATTGAAGAATTCCTTCAACAAGATTACAGCCCGCAGACCGTAAAGAGCTACATGTTTGCCATCAA
TCACTTTTTGAAGCTGAACCGCAAAGCCAAACGATACAAATACAAGAATATCGTTGAGTACATGGAAGAAATCAGCCAGC
AACAGCCCAACGCCAAATATCGTGTAGTTATCCTCTCGGCTATCAAGAAGTATTACGACTATCTGGTTATGAGCGGTTAC
AGAGCTGACCATCCCTGCAAAAAGCTCAATATCAAAGTCAACAGCAATCAGGCAGTTCAGGTTCAGGATTTGTTCAGCTC
AGAAGAGCTCCAGCTTCTTTTGAACCGTGAGAACCGATATGAGAATCTGGACACCAGAAACAGCGTTCTTTTGAGTCTTC
TGATTTATCAGGGATTGACCAGCGATGAGATTATCAGGCTCAATGTAAAAGATATTGATTTGGATTCGGGAACAGTCTAC
ATCAAGTCATCCGCTAACCTCAACAACAGAAGACTCCAATTGTTAGCCAAGCAGATACTGCTGTTCTCCAAGTACATCAG
CGAAGTCAGACCCAGAATGCTCAGAAGCTCAACTGACAAGCTGATTATTACAAAGCTGGGAAAACCCATTGCAGTGAACA
GCATCCACGCCATGATTGAGCCGTTGAAGCCATTGTTCCCAGACAAGAGCCTCAACCCGAAGACCATCCGAATGAGCGTT
ATCTGCAACTGGCTCAACGAAAAGGAACTGCCTCTGGAGCAAGTTCAGGAACTTGCGGGACATAAGTGGCCTGGCACTAC
CGAGAAGTATTTCAAAGCAGACAGCCAGCAACAGAGAGAGCTGATAAACAGATACTTTCCGCTGTGA

Upstream 100 bases:

>100_bases
CCGTGGATTTTTAGGTCATTCCCAAATCAATACCACCTACATCTATGCCGTAAAGAACAAGAGAAAAAAGCCAGTTACAA
CCTTTTAAACCAAACAGCCT

Downstream 100 bases:

>100_bases
TAATCTGACCTGATAGCATAAAAAAAGAGAGATAAATCCCTCTTTTTCAAACTTGTAATAATCTCTCTATTCAGCTACAG
CAGTCAGAGTGCCTTTCGAA

Product: phage integrase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 288; Mature: 287

Protein sequence:

>288_residues
MTKITIEEFLQQDYSPQTVKSYMFAINHFLKLNRKAKRYKYKNIVEYMEEISQQQPNAKYRVVILSAIKKYYDYLVMSGY
RADHPCKKLNIKVNSNQAVQVQDLFSSEELQLLLNRENRYENLDTRNSVLLSLLIYQGLTSDEIIRLNVKDIDLDSGTVY
IKSSANLNNRRLQLLAKQILLFSKYISEVRPRMLRSSTDKLIITKLGKPIAVNSIHAMIEPLKPLFPDKSLNPKTIRMSV
ICNWLNEKELPLEQVQELAGHKWPGTTEKYFKADSQQQRELINRYFPL

Sequences:

>Translated_288_residues
MTKITIEEFLQQDYSPQTVKSYMFAINHFLKLNRKAKRYKYKNIVEYMEEISQQQPNAKYRVVILSAIKKYYDYLVMSGY
RADHPCKKLNIKVNSNQAVQVQDLFSSEELQLLLNRENRYENLDTRNSVLLSLLIYQGLTSDEIIRLNVKDIDLDSGTVY
IKSSANLNNRRLQLLAKQILLFSKYISEVRPRMLRSSTDKLIITKLGKPIAVNSIHAMIEPLKPLFPDKSLNPKTIRMSV
ICNWLNEKELPLEQVQELAGHKWPGTTEKYFKADSQQQRELINRYFPL
>Mature_287_residues
TKITIEEFLQQDYSPQTVKSYMFAINHFLKLNRKAKRYKYKNIVEYMEEISQQQPNAKYRVVILSAIKKYYDYLVMSGYR
ADHPCKKLNIKVNSNQAVQVQDLFSSEELQLLLNRENRYENLDTRNSVLLSLLIYQGLTSDEIIRLNVKDIDLDSGTVYI
KSSANLNNRRLQLLAKQILLFSKYISEVRPRMLRSSTDKLIITKLGKPIAVNSIHAMIEPLKPLFPDKSLNPKTIRMSVI
CNWLNEKELPLEQVQELAGHKWPGTTEKYFKADSQQQRELINRYFPL

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell div

COG id: COG4974

COG function: function code L; Site-specific recombinase XerD

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerD subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109
- InterPro:   IPR004107
- InterPro:   IPR011932 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 33771; Mature: 33640

Theoretical pI: Translated: 9.96; Mature: 9.96

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKITIEEFLQQDYSPQTVKSYMFAINHFLKLNRKAKRYKYKNIVEYMEEISQQQPNAKY
CCEEEHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCE
RVVILSAIKKYYDYLVMSGYRADHPCKKLNIKVNSNQAVQVQDLFSSEELQLLLNRENRY
EEHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCEEEHHHHHCCHHHHHHHCCCCCC
ENLDTRNSVLLSLLIYQGLTSDEIIRLNVKDIDLDSGTVYIKSSANLNNRRLQLLAKQIL
CCCCHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCEEEEEECCCCCHHHHHHHHHHHH
LFSKYISEVRPRMLRSSTDKLIITKLGKPIAVNSIHAMIEPLKPLFPDKSLNPKTIRMSV
HHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCHHEEHHH
ICNWLNEKELPLEQVQELAGHKWPGTTEKYFKADSQQQRELINRYFPL
HHHHCCCCCCCHHHHHHHHCCCCCCCCHHHHCCCCHHHHHHHHHHCCC
>Mature Secondary Structure 
TKITIEEFLQQDYSPQTVKSYMFAINHFLKLNRKAKRYKYKNIVEYMEEISQQQPNAKY
CEEEHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCE
RVVILSAIKKYYDYLVMSGYRADHPCKKLNIKVNSNQAVQVQDLFSSEELQLLLNRENRY
EEHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCEEEHHHHHCCHHHHHHHCCCCCC
ENLDTRNSVLLSLLIYQGLTSDEIIRLNVKDIDLDSGTVYIKSSANLNNRRLQLLAKQIL
CCCCHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCEEEEEECCCCCHHHHHHHHHHHH
LFSKYISEVRPRMLRSSTDKLIITKLGKPIAVNSIHAMIEPLKPLFPDKSLNPKTIRMSV
HHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCHHEEHHH
ICNWLNEKELPLEQVQELAGHKWPGTTEKYFKADSQQQRELINRYFPL
HHHHCCCCCCCHHHHHHHHCCCCCCCCHHHHCCCCHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA