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The map label for this gene is xerC2 [H]

Identifier: 146301442

GI number: 146301442

Start: 4391810

End: 4392727

Strand: Reverse

Name: xerC2 [H]

Synonym: Fjoh_3700

Alternate gene names: 146301442

Gene position: 4392727-4391810 (Counterclockwise)

Preceding gene: 146301443

Following gene: 146301441

Centisome position: 72.05

GC content: 43.57

Gene sequence:

>918_bases
ATGAAAACAGCGATAAAAAATACAGCATTCCAGAATCTTCTTAGAGATTTTGACAGCTATGTAAAAGTGAAGAACTACAA
ACAGGGAAAAGGAAGCATGTACCAGACCGCAGTATCGGAATTTCTTATCTGGCTGGAAAAATCAGGAATCAACAGCATCA
GAAAAGTGACTGGAAGAGAATCGGTAAGCTATTACGAGCATCTGATAAGCAGACCCAAACACAGAGGAAACGGAACGCTC
GCAGAAAAGACCATCAAATTCCATCTTTTTGCTCTGGGTCTGTTTGTCCTGAACCTGCTGGAGAACAATCAGATTGAAAA
AGCATACTACATTCCAAGCTACTCGGGAGAAAGCGGAAATTCCAGAAATGCGCTGAGCGTTGAAGAAATCAGAATGCTCT
ACCAGCATTGCGAGAACGATTTACAGCGGGCTCTCATCTCAACAGCTTACGGATGCGGACTGCGGAGGTCGGAAATTGAA
GCCCTGAACACAAGAGACATCCAGCTCTCCAGAGGAATGGTAATTGTCAGGGACGGAAAAGGAAGCAAAAGACGTGAAGT
TCCGATGAGTGATATGGTTGCTGGACACATCAAAAAATACATAGCCGAGGAACGTTATGAGAAGCTGAAAGCCACAAATC
GTACTGAGGACGCCTTTTTCATTTATGACAGCGGTAAGCGGATGAATGGCGAATATCTCAACAGCATGCTAAAGAAAATC
GTTGGGCAGACCAGCAGTTATGAGCTTATCCAGAAAGACATAACGCTCCACTGCCTCAGACACAGCATTGCCAGCCACCT
GATGGAAAAGAACGCAGGTATTGATTTTATCCGTGGATTTTTAGGTCATTCCCAAATCAATACCACCTACATCTATGCCG
TAAAGAACAAGAGAAAAAAGCCAGTTACAACCTTTTAA

Upstream 100 bases:

>100_bases
AGACCCAGCAATTGCTGGCAATATAACGCTGGTGTTCCCAATTTTGCATAATGCGCCTAAGGAATATTTTCGAAATGATG
ACCAAAAAAACAGCAAACCA

Downstream 100 bases:

>100_bases
ACCAAACAGCCTATGACTAAAATAACAATTGAAGAATTCCTTCAACAAGATTACAGCCCGCAGACCGTAAAGAGCTACAT
GTTTGCCATCAATCACTTTT

Product: phage integrase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 305; Mature: 305

Protein sequence:

>305_residues
MKTAIKNTAFQNLLRDFDSYVKVKNYKQGKGSMYQTAVSEFLIWLEKSGINSIRKVTGRESVSYYEHLISRPKHRGNGTL
AEKTIKFHLFALGLFVLNLLENNQIEKAYYIPSYSGESGNSRNALSVEEIRMLYQHCENDLQRALISTAYGCGLRRSEIE
ALNTRDIQLSRGMVIVRDGKGSKRREVPMSDMVAGHIKKYIAEERYEKLKATNRTEDAFFIYDSGKRMNGEYLNSMLKKI
VGQTSSYELIQKDITLHCLRHSIASHLMEKNAGIDFIRGFLGHSQINTTYIYAVKNKRKKPVTTF

Sequences:

>Translated_305_residues
MKTAIKNTAFQNLLRDFDSYVKVKNYKQGKGSMYQTAVSEFLIWLEKSGINSIRKVTGRESVSYYEHLISRPKHRGNGTL
AEKTIKFHLFALGLFVLNLLENNQIEKAYYIPSYSGESGNSRNALSVEEIRMLYQHCENDLQRALISTAYGCGLRRSEIE
ALNTRDIQLSRGMVIVRDGKGSKRREVPMSDMVAGHIKKYIAEERYEKLKATNRTEDAFFIYDSGKRMNGEYLNSMLKKI
VGQTSSYELIQKDITLHCLRHSIASHLMEKNAGIDFIRGFLGHSQINTTYIYAVKNKRKKPVTTF
>Mature_305_residues
MKTAIKNTAFQNLLRDFDSYVKVKNYKQGKGSMYQTAVSEFLIWLEKSGINSIRKVTGRESVSYYEHLISRPKHRGNGTL
AEKTIKFHLFALGLFVLNLLENNQIEKAYYIPSYSGESGNSRNALSVEEIRMLYQHCENDLQRALISTAYGCGLRRSEIE
ALNTRDIQLSRGMVIVRDGKGSKRREVPMSDMVAGHIKKYIAEERYEKLKATNRTEDAFFIYDSGKRMNGEYLNSMLKKI
VGQTSSYELIQKDITLHCLRHSIASHLMEKNAGIDFIRGFLGHSQINTTYIYAVKNKRKKPVTTF

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell div

COG id: COG4974

COG function: function code L; Site-specific recombinase XerD

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790244, Length=150, Percent_Identity=29.3333333333333, Blast_Score=71, Evalue=7e-14,
Organism=Escherichia coli, GI1789261, Length=153, Percent_Identity=30.0653594771242, Blast_Score=67, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 35009; Mature: 35009

Theoretical pI: Translated: 10.10; Mature: 10.10

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTAIKNTAFQNLLRDFDSYVKVKNYKQGKGSMYQTAVSEFLIWLEKSGINSIRKVTGRE
CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHCCH
SVSYYEHLISRPKHRGNGTLAEKTIKFHLFALGLFVLNLLENNQIEKAYYIPSYSGESGN
HHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCC
SRNALSVEEIRMLYQHCENDLQRALISTAYGCGLRRSEIEALNTRDIQLSRGMVIVRDGK
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCEEEECCEEEEECCC
GSKRREVPMSDMVAGHIKKYIAEERYEKLKATNRTEDAFFIYDSGKRMNGEYLNSMLKKI
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHH
VGQTSSYELIQKDITLHCLRHSIASHLMEKNAGIDFIRGFLGHSQINTTYIYAVKNKRKK
HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCEEEEEEEECCCCC
PVTTF
CCCCC
>Mature Secondary Structure
MKTAIKNTAFQNLLRDFDSYVKVKNYKQGKGSMYQTAVSEFLIWLEKSGINSIRKVTGRE
CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHCCH
SVSYYEHLISRPKHRGNGTLAEKTIKFHLFALGLFVLNLLENNQIEKAYYIPSYSGESGN
HHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCC
SRNALSVEEIRMLYQHCENDLQRALISTAYGCGLRRSEIEALNTRDIQLSRGMVIVRDGK
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCEEEECCEEEEECCC
GSKRREVPMSDMVAGHIKKYIAEERYEKLKATNRTEDAFFIYDSGKRMNGEYLNSMLKKI
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHH
VGQTSSYELIQKDITLHCLRHSIASHLMEKNAGIDFIRGFLGHSQINTTYIYAVKNKRKK
HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCEEEEEEEECCCCC
PVTTF
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11823852 [H]