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The map label for this gene is araC [C]

Identifier: 146301050

GI number: 146301050

Start: 3949698

End: 3950543

Strand: Reverse

Name: araC [C]

Synonym: Fjoh_3306

Alternate gene names: 146301050

Gene position: 3950543-3949698 (Counterclockwise)

Preceding gene: 146301051

Following gene: 146301049

Centisome position: 64.8

GC content: 33.22

Gene sequence:

>846_bases
TTGAAAAATAAAATTCAAACGTATTCCTTAACAAAGCATAAAAGCCTTTTTTCGAGTACTGATAAAGAGGATTATTTCTA
CACTCAAACCACAGAACATCCCTACATAAGTGAACCGTATCGTGCAGAAAGCTATGCAATTGAATTTTTAAGAAAGGGTT
CAATTATAGTGCAGACACATTTGGATAAAAAAATAATCCATGCGCCTGCTGTCATTGCTTTGGGCCCAACAGTAACGAGA
AGTTTTACCAAAAACAGCGATGAAATTTTAATTGATATTATATTCTTTAAACCGCAGTTTTTTCTGGAAACCCAGACAAA
TGTTTTCTTTTTATCGCAATATGAATTTTTCGAAAATAATAATGTTCTAGAACTGAAAGGAAGTTTAAAAATTAAATTTG
AGCGCATTTTCAATTTGATTAAAGAACTTTTAGAAGGCGATTCTAAGCATCAATCGGCGACGTTAATAAGTTATCTGTAT
ATTTTGATATACGAGCTCGATTCGGTTCAGGAAGCCGTTTCTGCTGGAGGAACTCAAAATCCAATATTCGAAAATTTTAA
AAAACTTCTTTTTAAAGATTTCCTAAAACAAAGGTCAGTCGAGTATTATGCCGATTCCTTAAACGTAACCCGAAAACACC
TGTCAGAAGTAATTAAAAAGAACAGCGGCAAAACCGCAAGCGACTGGATTAATGAAGTCGTAATTCTGGAAGCTAAAGTT
TTATTGCAGAATAAAAGCTTAACCATCAATCAAATCAGCGACGAATTGAACTTTCAAAATCAATCCGCTTTTGGAAGGTT
TTTTAAAAATCATACTGGTATTTCACCTTTAGAATATCGGAAGTAG

Upstream 100 bases:

>100_bases
ATCTTATAAATTTAGAAATGGCGCTTTTTGCGCCATTTTTGTTTCTTTTCATATCGCTTTCATTCGTTATCTTTGAGTAT
CATTATTACAAAAGACAACT

Downstream 100 bases:

>100_bases
TTTTTTTTGTTTTCAGTCGCAGTCCCGGTTTTTAGTTTTTTTTGAATCTCGCAAAGTCGCAGAGTCGCAAAGTTTTTTTC
TTAATTTAAAACTTATTAAA

Product: helix-turn-helix domain-containing protein

Products: NA

Alternate protein names: Transcriptional Regulator AraC Family; AraC Family Transcriptional Regulator; AraC-Type Transcription Regulator; Helix-Turn-Helix Domain-Containing Protein; Transcriptional Regulator Arac Family; AraC/XylS Family Transcriptional Regulator; AraC-Family Regulatory Protein; Bacterial Regulatory Helix-Turn-Helix Protein; Helix-Turn-Helix- Domain Containing Protein AraC Type; AraC-Type Transcriptional Regulator; AraC-Family Transcriptional Regulator

Number of amino acids: Translated: 281; Mature: 281

Protein sequence:

>281_residues
MKNKIQTYSLTKHKSLFSSTDKEDYFYTQTTEHPYISEPYRAESYAIEFLRKGSIIVQTHLDKKIIHAPAVIALGPTVTR
SFTKNSDEILIDIIFFKPQFFLETQTNVFFLSQYEFFENNNVLELKGSLKIKFERIFNLIKELLEGDSKHQSATLISYLY
ILIYELDSVQEAVSAGGTQNPIFENFKKLLFKDFLKQRSVEYYADSLNVTRKHLSEVIKKNSGKTASDWINEVVILEAKV
LLQNKSLTINQISDELNFQNQSAFGRFFKNHTGISPLEYRK

Sequences:

>Translated_281_residues
MKNKIQTYSLTKHKSLFSSTDKEDYFYTQTTEHPYISEPYRAESYAIEFLRKGSIIVQTHLDKKIIHAPAVIALGPTVTR
SFTKNSDEILIDIIFFKPQFFLETQTNVFFLSQYEFFENNNVLELKGSLKIKFERIFNLIKELLEGDSKHQSATLISYLY
ILIYELDSVQEAVSAGGTQNPIFENFKKLLFKDFLKQRSVEYYADSLNVTRKHLSEVIKKNSGKTASDWINEVVILEAKV
LLQNKSLTINQISDELNFQNQSAFGRFFKNHTGISPLEYRK
>Mature_281_residues
MKNKIQTYSLTKHKSLFSSTDKEDYFYTQTTEHPYISEPYRAESYAIEFLRKGSIIVQTHLDKKIIHAPAVIALGPTVTR
SFTKNSDEILIDIIFFKPQFFLETQTNVFFLSQYEFFENNNVLELKGSLKIKFERIFNLIKELLEGDSKHQSATLISYLY
ILIYELDSVQEAVSAGGTQNPIFENFKKLLFKDFLKQRSVEYYADSLNVTRKHLSEVIKKNSGKTASDWINEVVILEAKV
LLQNKSLTINQISDELNFQNQSAFGRFFKNHTGISPLEYRK

Specific function: This Protein Controls The Expression Of At Least Six Genes That Are Involved In The Transport And Catabolism Of L-Arabinose. It Regulates Initiation Of Transcription Of The Arabad Operon And It Also Controls Its Own Synthesis. The L- Arabinose Operon Dis

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 32648; Mature: 32648

Theoretical pI: Translated: 8.98; Mature: 8.98

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.4 %Met     (Translated Protein)
0.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
0.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNKIQTYSLTKHKSLFSSTDKEDYFYTQTTEHPYISEPYRAESYAIEFLRKGSIIVQTH
CCCCCEEEECHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHCCCEEEEEC
LDKKIIHAPAVIALGPTVTRSFTKNSDEILIDIIFFKPQFFLETQTNVFFLSQYEFFENN
CCCHHHHCCEEEEECCHHHHHHCCCCCCEEEEEEEECCEEEEEECCCEEEEEEEEEECCC
NVLELKGSLKIKFERIFNLIKELLEGDSKHQSATLISYLYILIYELDSVQEAVSAGGTQN
CEEEEECCEEEEHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
PIFENFKKLLFKDFLKQRSVEYYADSLNVTRKHLSEVIKKNSGKTASDWINEVVILEAKV
HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHEEHHH
LLQNKSLTINQISDELNFQNQSAFGRFFKNHTGISPLEYRK
HHCCCCEEHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure
MKNKIQTYSLTKHKSLFSSTDKEDYFYTQTTEHPYISEPYRAESYAIEFLRKGSIIVQTH
CCCCCEEEECHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHCCCEEEEEC
LDKKIIHAPAVIALGPTVTRSFTKNSDEILIDIIFFKPQFFLETQTNVFFLSQYEFFENN
CCCHHHHCCEEEEECCHHHHHHCCCCCCEEEEEEEECCEEEEEECCCEEEEEEEEEECCC
NVLELKGSLKIKFERIFNLIKELLEGDSKHQSATLISYLYILIYELDSVQEAVSAGGTQN
CEEEEECCEEEEHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
PIFENFKKLLFKDFLKQRSVEYYADSLNVTRKHLSEVIKKNSGKTASDWINEVVILEAKV
HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHEEHHH
LLQNKSLTINQISDELNFQNQSAFGRFFKNHTGISPLEYRK
HHCCCCEEHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA