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The map label for this gene is yxkH [H]

Identifier: 146300277

GI number: 146300277

Start: 3006870

End: 3007583

Strand: Direct

Name: yxkH [H]

Synonym: Fjoh_2522

Alternate gene names: 146300277

Gene position: 3006870-3007583 (Clockwise)

Preceding gene: 146300276

Following gene: 146300278

Centisome position: 49.32

GC content: 26.33

Gene sequence:

>714_bases
ATGTCAAAGTTACCCATTTTAATGTACCACAATGTTGTTGTGGATGAAGCTAAATCTTTGAATTTAAGTATTTCTATTTC
TAAGCTGGAATCTCAATTAAAGTTTCTGCATGATAATAATTATACAACATTTCATTTTAAGGATTTAGAGAATTTAAATG
AGCTGCCTTCAAAAAGCATTATCATCACTTTTGATGATGTTACAGAATGCCAGCTTTTGTATGCGGTGCCTTTGCTTGAA
AAATATCAATTAAAAGCTTCTTTTTTTATACCATTTTCTTTCGTTGGTAATTTTGATTATTGGATTGAAGGAAAAGAAAA
AATAATGAGTGTTGACCAATTAAAAGAATTAAACACTAATCTTATTGAATTAGGGTATCATTCTTTTGAACATAAAAGAT
ACAGCTCATTATCAAAAGAAGAATTAGAAGCTGATTTCATTAAGTCAAATGATTTTATAAAAAAAAATCAATTAGATATA
AAACCAGTTTTAGCTTATCCTTATGGTAATTATGCTAAAAAAGAGGCTCAATTTGCTGTTTTTGAAAAAATTATGCGCGA
TAATGGCATAAAATATGGTTTGAGAATTGGAAACAGGGTTAATAAATTTCCTTTTAAAAATAATTATTTAGTAAAAAGAA
TTGACATAAAAGGAGAGGACAGTCTGTTTAGATTTAGGTTAAAATTAAAGATTGGAAAACTTAAATTATTTTAA

Upstream 100 bases:

>100_bases
AATAATAGGCTTGAAATATGTGAAATATTATTTTTTGTTTAATTTTTTCTTTTTTTTGTTAATCAATTCTATAAATATAT
AGATTTGCACAAAAAAGTAG

Downstream 100 bases:

>100_bases
ATAATACATGAAAATCAGCGGATTGGTAATAACCTATAATGAGGAGAAAAATATAGGTAAATGTATAGATGCACTTTTTA
GAATTTGTGATGAAGTAATC

Product: polysaccharide deacetylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 237; Mature: 236

Protein sequence:

>237_residues
MSKLPILMYHNVVVDEAKSLNLSISISKLESQLKFLHDNNYTTFHFKDLENLNELPSKSIIITFDDVTECQLLYAVPLLE
KYQLKASFFIPFSFVGNFDYWIEGKEKIMSVDQLKELNTNLIELGYHSFEHKRYSSLSKEELEADFIKSNDFIKKNQLDI
KPVLAYPYGNYAKKEAQFAVFEKIMRDNGIKYGLRIGNRVNKFPFKNNYLVKRIDIKGEDSLFRFRLKLKIGKLKLF

Sequences:

>Translated_237_residues
MSKLPILMYHNVVVDEAKSLNLSISISKLESQLKFLHDNNYTTFHFKDLENLNELPSKSIIITFDDVTECQLLYAVPLLE
KYQLKASFFIPFSFVGNFDYWIEGKEKIMSVDQLKELNTNLIELGYHSFEHKRYSSLSKEELEADFIKSNDFIKKNQLDI
KPVLAYPYGNYAKKEAQFAVFEKIMRDNGIKYGLRIGNRVNKFPFKNNYLVKRIDIKGEDSLFRFRLKLKIGKLKLF
>Mature_236_residues
SKLPILMYHNVVVDEAKSLNLSISISKLESQLKFLHDNNYTTFHFKDLENLNELPSKSIIITFDDVTECQLLYAVPLLEK
YQLKASFFIPFSFVGNFDYWIEGKEKIMSVDQLKELNTNLIELGYHSFEHKRYSSLSKEELEADFIKSNDFIKKNQLDIK
PVLAYPYGNYAKKEAQFAVFEKIMRDNGIKYGLRIGNRVNKFPFKNNYLVKRIDIKGEDSLFRFRLKLKIGKLKLF

Specific function: Unknown

COG id: COG0726

COG function: function code G; Predicted xylanase/chitin deacetylase

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the polysaccharide deacetylase family [H]

Homologues:

Organism=Escherichia coli, GI1786322, Length=237, Percent_Identity=27.4261603375527, Blast_Score=67, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011330
- InterPro:   IPR002509 [H]

Pfam domain/function: PF01522 Polysacc_deac_1 [H]

EC number: NA

Molecular weight: Translated: 27866; Mature: 27734

Theoretical pI: Translated: 9.55; Mature: 9.55

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKLPILMYHNVVVDEAKSLNLSISISKLESQLKFLHDNNYTTFHFKDLENLNELPSKSI
CCCCCEEEEECEEEECCCCEEEEEEHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCCCEE
IITFDDVTECQLLYAVPLLEKYQLKASFFIPFSFVGNFDYWIEGKEKIMSVDQLKELNTN
EEEECCCCCEEEEEHHHHHHHHEEEEEEEEEEEEECCEEEEECCHHHHHHHHHHHHHCCC
LIELGYHSFEHKRYSSLSKEELEADFIKSNDFIKKNQLDIKPVLAYPYGNYAKKEAQFAV
EEECCCHHHHHHHHHCCCHHHHHHHHHCCCCCEECCCCCCEEEEECCCCCCHHHHHHHHH
FEKIMRDNGIKYGLRIGNRVNKFPFKNNYLVKRIDIKGEDSLFRFRLKLKIGKLKLF
HHHHHHHCCCEEEEEECCCCCCCCCCCCEEEEEEECCCCCCEEEEEEEEEEEEEECC
>Mature Secondary Structure 
SKLPILMYHNVVVDEAKSLNLSISISKLESQLKFLHDNNYTTFHFKDLENLNELPSKSI
CCCCEEEEECEEEECCCCEEEEEEHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCCCEE
IITFDDVTECQLLYAVPLLEKYQLKASFFIPFSFVGNFDYWIEGKEKIMSVDQLKELNTN
EEEECCCCCEEEEEHHHHHHHHEEEEEEEEEEEEECCEEEEECCHHHHHHHHHHHHHCCC
LIELGYHSFEHKRYSSLSKEELEADFIKSNDFIKKNQLDIKPVLAYPYGNYAKKEAQFAV
EEECCCHHHHHHHHHCCCHHHHHHHHHCCCCCEECCCCCCEEEEECCCCCCHHHHHHHHH
FEKIMRDNGIKYGLRIGNRVNKFPFKNNYLVKRIDIKGEDSLFRFRLKLKIGKLKLF
HHHHHHHCCCEEEEEECCCCCCCCCCCCEEEEEEECCCCCCEEEEEEEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8969509; 9384377 [H]