| Definition | Flavobacterium johnsoniae UW101 chromosome, complete genome. |
|---|---|
| Accession | NC_009441 |
| Length | 6,096,872 |
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The map label for this gene is 146299799
Identifier: 146299799
GI number: 146299799
Start: 2400248
End: 2401732
Strand: Direct
Name: 146299799
Synonym: Fjoh_2040
Alternate gene names: NA
Gene position: 2400248-2401732 (Clockwise)
Preceding gene: 146299798
Following gene: 146299800
Centisome position: 39.37
GC content: 35.76
Gene sequence:
>1485_bases ATGAAAAGAGGGATATTTATAATCGCATTATTATTTTCCGTTCAAATGTTTTCGCAGGCCATTTATGAAGATGAGCGATA TGTACCGGAAACAGATCCGGCAGTGTTGAAAAACTTAGACGAGTGGCAGGGCAAAAAATTTGGTCTGTTAATGCACTGGG GAACTTACAGCCAATGGGGAATTGTAGAATCTTGGTCTATCTGTCCAGAAGATTACGGATGGTGTGAACGTAAAAAAGGA AGCAATCCGTCTAATTATAATGATTATATTAAAGATTACGAAGGATTAAGAAAAACATTTAATCCTGTAAAATTTAATCC GGAAAAATGGGCAAAAGCAGCTAAATATGCCGGAATGAAATACATGGTTTTTACAACAAAACACCATGACGGATTTAATA TGTATGATACTAAATATTCTGATTACAAAATCACGAGCAAAGATGTTCCTTTTCATACCAACCCAAAAGCAGATGTTTTA AAAGAAATTTTCAACTCGTTTAGAGGAGAAGGTATTTCAACAGGAGCTTATTTCTCTAAACCAGACTGGCATAATGAAAA CTACTGGGATCCATACTTTCCTCCTTTCGACAGAAACGTAAACTACGATCCGTCATTATATCCAGAAAAATGGCAGAAAT ATGTTGATTTCACTCACAACCAAATCTTAGAGATCTTAACAAACTACGGTAAAGTTGATATTTTATGGTTAGATGGAGGA TGGGTTAGAAAAAGAGACCAGGTTAACATCAAAGAAAACTACGACGAGAAATTTACTGAAAACGAATCTAAAAACGGTTT CATCAAACACAGAGTTGTAGATCAGGATCCTAAAATGGACGAATTAGTTGTAAAAGCGCGTCAAAAACAACCAGGTTTAA TCGTGGTGGATAGAGCGGTTCACGGTAAAAACCAAAACTATTTAACTCCAGAAGGACGTGTTCCTGCAAAAACATTGCCT TATCCTTGGGAATCTTGTATTCCAGCCGGCGGTGGATGGTCATATTCTCCAGGAGCTGAATACATGACAGGAAGACAAGG TATTCACATGTTGGTTGATATTGTAGCAAAAGGCGGAAACTTGTTATTAAACATTGCGCCAAGTCCGGAAGGAGAATGGG ATAAAGGAGCTTACGATTTATTACAGGCTTATGGTGACTGGATGAAAGTAAACAGCACAGCGATTTACAACACAAAACCA ATCGAACCTTATAAAGAAGAAAATATTTGCTTTACACAAAATAAAACAGGAAATGTATTTGCATTTTATTTAGCTAAAGA AGGAGAAAATAAAATTCCTGCAGAAGTTACTGTAAAATCGATCAGCCCGAAAAAAGGAACAAAAATTACGATGTTAGGTT CTAAAACTTCTTTAAAATGGACAAAAGAAGGAAACGGATTTAAAGTAATTATTCCAGAAAGCTTAAGAAATAATCTTCCT GCAAAAGAAGCGTGGACTTTAAAAATAGAAGCGATCAACAGATAA
Upstream 100 bases:
>100_bases TTTAACAAAATTGAGTAAGGCAAGGACGCTTTGTCTCAACATGTTAAATGTTGATTTTACAATTAAAAAAAACAAAAACA AAACCTAAAATAGAATAAAA
Downstream 100 bases:
>100_bases AAATGAAACCTATGGTTTTAAATACAAACAAATTTAAAACAGCATGTATTTTATACATGCTGTTTTTTAGCATCATGATT TTTGCGCAGCAACCTGCCGA
Product: alpha-L-fucosidase
Products: NA
Alternate protein names: Glycoside Hydrolase Family; Glycosyl Hydrolase; Exported Alpha-L-Fucosidase Protein; Fucosidase; Glycoside Hydrolase Family Alpha-L-Fucosidase; Alpha-L-Fucosidase Protein; Exporte Hydrolase; Alpha-L-Fucosidase Family Protein; Coagulation Factor 5/8 Type Domain Protein; Glycosyl Hydrolase Alpha-L-Fucosidase; Family; Exported Hydrolase; Calx-Beta Domain-Containing Protein; Alpha-L-Fucosidase Superfamily; Glycoside Hydrolase; Lipoprotein
Number of amino acids: Translated: 494; Mature: 494
Protein sequence:
>494_residues MKRGIFIIALLFSVQMFSQAIYEDERYVPETDPAVLKNLDEWQGKKFGLLMHWGTYSQWGIVESWSICPEDYGWCERKKG SNPSNYNDYIKDYEGLRKTFNPVKFNPEKWAKAAKYAGMKYMVFTTKHHDGFNMYDTKYSDYKITSKDVPFHTNPKADVL KEIFNSFRGEGISTGAYFSKPDWHNENYWDPYFPPFDRNVNYDPSLYPEKWQKYVDFTHNQILEILTNYGKVDILWLDGG WVRKRDQVNIKENYDEKFTENESKNGFIKHRVVDQDPKMDELVVKARQKQPGLIVVDRAVHGKNQNYLTPEGRVPAKTLP YPWESCIPAGGGWSYSPGAEYMTGRQGIHMLVDIVAKGGNLLLNIAPSPEGEWDKGAYDLLQAYGDWMKVNSTAIYNTKP IEPYKEENICFTQNKTGNVFAFYLAKEGENKIPAEVTVKSISPKKGTKITMLGSKTSLKWTKEGNGFKVIIPESLRNNLP AKEAWTLKIEAINR
Sequences:
>Translated_494_residues MKRGIFIIALLFSVQMFSQAIYEDERYVPETDPAVLKNLDEWQGKKFGLLMHWGTYSQWGIVESWSICPEDYGWCERKKG SNPSNYNDYIKDYEGLRKTFNPVKFNPEKWAKAAKYAGMKYMVFTTKHHDGFNMYDTKYSDYKITSKDVPFHTNPKADVL KEIFNSFRGEGISTGAYFSKPDWHNENYWDPYFPPFDRNVNYDPSLYPEKWQKYVDFTHNQILEILTNYGKVDILWLDGG WVRKRDQVNIKENYDEKFTENESKNGFIKHRVVDQDPKMDELVVKARQKQPGLIVVDRAVHGKNQNYLTPEGRVPAKTLP YPWESCIPAGGGWSYSPGAEYMTGRQGIHMLVDIVAKGGNLLLNIAPSPEGEWDKGAYDLLQAYGDWMKVNSTAIYNTKP IEPYKEENICFTQNKTGNVFAFYLAKEGENKIPAEVTVKSISPKKGTKITMLGSKTSLKWTKEGNGFKVIIPESLRNNLP AKEAWTLKIEAINR >Mature_494_residues MKRGIFIIALLFSVQMFSQAIYEDERYVPETDPAVLKNLDEWQGKKFGLLMHWGTYSQWGIVESWSICPEDYGWCERKKG SNPSNYNDYIKDYEGLRKTFNPVKFNPEKWAKAAKYAGMKYMVFTTKHHDGFNMYDTKYSDYKITSKDVPFHTNPKADVL KEIFNSFRGEGISTGAYFSKPDWHNENYWDPYFPPFDRNVNYDPSLYPEKWQKYVDFTHNQILEILTNYGKVDILWLDGG WVRKRDQVNIKENYDEKFTENESKNGFIKHRVVDQDPKMDELVVKARQKQPGLIVVDRAVHGKNQNYLTPEGRVPAKTLP YPWESCIPAGGGWSYSPGAEYMTGRQGIHMLVDIVAKGGNLLLNIAPSPEGEWDKGAYDLLQAYGDWMKVNSTAIYNTKP IEPYKEENICFTQNKTGNVFAFYLAKEGENKIPAEVTVKSISPKKGTKITMLGSKTSLKWTKEGNGFKVIIPESLRNNLP AKEAWTLKIEAINR
Specific function: Unknown
COG id: COG3669
COG function: function code G; Alpha-L-fucosidase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI119360348, Length=484, Percent_Identity=27.6859504132231, Blast_Score=130, Evalue=2e-30, Organism=Homo sapiens, GI40068512, Length=492, Percent_Identity=26.0162601626016, Blast_Score=119, Evalue=5e-27, Organism=Caenorhabditis elegans, GI71997700, Length=513, Percent_Identity=24.7563352826511, Blast_Score=129, Evalue=3e-30, Organism=Drosophila melanogaster, GI24662717, Length=530, Percent_Identity=23.2075471698113, Blast_Score=90, Evalue=3e-18, Organism=Drosophila melanogaster, GI78706642, Length=530, Percent_Identity=23.2075471698113, Blast_Score=90, Evalue=3e-18,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 57019; Mature: 57019
Theoretical pI: Translated: 8.62; Mature: 8.62
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKRGIFIIALLFSVQMFSQAIYEDERYVPETDPAVLKNLDEWQGKKFGLLMHWGTYSQWG CCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCHHHCCCEEEEEEECCCCCCCC IVESWSICPEDYGWCERKKGSNPSNYNDYIKDYEGLRKTFNPVKFNPEKWAKAAKYAGMK CCCCCCCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCEE YMVFTTKHHDGFNMYDTKYSDYKITSKDVPFHTNPKADVLKEIFNSFRGEGISTGAYFSK EEEEEEEECCCCCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCC PDWHNENYWDPYFPPFDRNVNYDPSLYPEKWQKYVDFTHNQILEILTNYGKVDILWLDGG CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCC WVRKRDQVNIKENYDEKFTENESKNGFIKHRVVDQDPKMDELVVKARQKQPGLIVVDRAV EECCCCCCCCHHCCCHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHCCCCCEEEEEEEE HGKNQNYLTPEGRVPAKTLPYPWESCIPAGGGWSYSPGAEYMTGRQGIHMLVDIVAKGGN CCCCCCEECCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCHHCCCCHHHHHHHHHHCCCC LLLNIAPSPEGEWDKGAYDLLQAYGDWMKVNSTAIYNTKPIEPYKEENICFTQNKTGNVF EEEEECCCCCCCCCCHHHHHHHHHCCCEEECCEEEECCCCCCCCCCCCEEEECCCCCCEE AFYLAKEGENKIPAEVTVKSISPKKGTKITMLGSKTSLKWTKEGNGFKVIIPESLRNNLP EEEEEECCCCCCCCEEEEEECCCCCCCEEEEECCCCEEEEEECCCCEEEEECHHHHCCCC AKEAWTLKIEAINR CCCEEEEEEEEECC >Mature Secondary Structure MKRGIFIIALLFSVQMFSQAIYEDERYVPETDPAVLKNLDEWQGKKFGLLMHWGTYSQWG CCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCHHHCCCEEEEEEECCCCCCCC IVESWSICPEDYGWCERKKGSNPSNYNDYIKDYEGLRKTFNPVKFNPEKWAKAAKYAGMK CCCCCCCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCEE YMVFTTKHHDGFNMYDTKYSDYKITSKDVPFHTNPKADVLKEIFNSFRGEGISTGAYFSK EEEEEEEECCCCCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCC PDWHNENYWDPYFPPFDRNVNYDPSLYPEKWQKYVDFTHNQILEILTNYGKVDILWLDGG CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCC WVRKRDQVNIKENYDEKFTENESKNGFIKHRVVDQDPKMDELVVKARQKQPGLIVVDRAV EECCCCCCCCHHCCCHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHCCCCCEEEEEEEE HGKNQNYLTPEGRVPAKTLPYPWESCIPAGGGWSYSPGAEYMTGRQGIHMLVDIVAKGGN CCCCCCEECCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCHHCCCCHHHHHHHHHHCCCC LLLNIAPSPEGEWDKGAYDLLQAYGDWMKVNSTAIYNTKPIEPYKEENICFTQNKTGNVF EEEEECCCCCCCCCCHHHHHHHHHCCCEEECCEEEECCCCCCCCCCCCEEEECCCCCCEE AFYLAKEGENKIPAEVTVKSISPKKGTKITMLGSKTSLKWTKEGNGFKVIIPESLRNNLP EEEEEECCCCCCCCEEEEEECCCCCCCEEEEECCCCEEEEEECCCCEEEEECHHHHCCCC AKEAWTLKIEAINR CCCEEEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA