| Definition | Flavobacterium johnsoniae UW101 chromosome, complete genome. |
|---|---|
| Accession | NC_009441 |
| Length | 6,096,872 |
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The map label for this gene is nahA [H]
Identifier: 146299798
GI number: 146299798
Start: 2397653
End: 2399971
Strand: Direct
Name: nahA [H]
Synonym: Fjoh_2039
Alternate gene names: 146299798
Gene position: 2397653-2399971 (Clockwise)
Preceding gene: 146299797
Following gene: 146299799
Centisome position: 39.33
GC content: 35.75
Gene sequence:
>2319_bases ATGAGAATTATAAAATCTTATTTGATAATCGGTTTTCTTGCTCTTGTAACTTCTTCGTATGCACAGAAAGTTTTCACAGA GAAAGACATTCGTATCATTCCAAAACCAACTCAGACTCTAATAAAAACCGGTGTTTTTGAATTTAATAAAGATACAAAGT TTGTTACCGGAAATGATTTCCAAAAAGACGCTGCGAATGCTTTGGCTTCTAAATTAGCCATTGCAGCAGGATGGAAACCA GAAACAACAACAAAAGCTCCGGCAAGTAATTTTGTTCAGTTTAAAACAGATCCAAACTTAAAAAATGAAGCTTATATTTT AGACGTAAATCCAAATAGTATTGTTATTTCGGCTAAAGGAAATACAGGTTTTTTATACGGTCTGGAAAGCATCAGACAAT TACTTCCTGAAGCAATCGAAAGCCAATATGCCGTAACATCTGCAAAATGGCAGATTCCAAGTTTAACGATAAATGATGAA CCTCGATTTAAATGGAGAGGTTTAATGCTGGATTTATCACGTCATTTCTTCGATAAAAATTATATTCTGACTACAATTGA TCGTTTGGCAATGCACAAAATGAATGTTTTGCATTTGCATTTAGTAGACGATCAGGGCTGGAGAATCGAAATTAAAAAAT ATCCAAAACTAACAGAAGTCGGAGCCTGGAGAGTTGATCAGGAAAACTTGTCTTGGAACGCCAGACTTGCTGTAAGTGCA GATCAAAAAGGAACTTACGGGGGATTTTTTACGCAGGACGAATTAAGAGAAATTGTAAAATATGCTGCAACAAAAGGCAT CGAAGTAATTCCTGAAATCGAAATGCCTGCTCACGTAAGCAGTGCCATTGCATCATATCCTGAACTGGCTTGTTTTGATC AGAAAATTGGAGTTCCTTCTGGCGGAGTTTGGCCTTTAACAGATATTTATTGTGCAGGAAAAGAAACTACGTTTGAGTTT TTACAAAATGTAATCGATGAAGTAATTACCATTTTCCCTTCAAAATATATTCATATTGGAGGAGATGAAGCGACTAAAAC CAATTGGGCAAAATGTCCGCACTGCCAAAAAAGAATTAAAGATGAACACTTAAAAAGTGTAGACGAATTACAAAGTTATT TTGTAAAACGTATGGAAAAATACATCAATTCTAAAGGCAAAAAAGTAATTGGCTGGGATGAAATTTTAGAAGGAGGTCTG GCTCCGGATGCAACAGTAATGAGCTGGAGAGGAACAAAAGGCGGAATTGAAGCGGCAGATCAGGGACACGATGTTATTAT GACTCCTGAAACACCTTGTTATTTCAACTTTTATCAAGGTCCGCAAAACGAAGAACCTTTAGCTTTTGATGCTTATAACC CGTTAAATGAAGTTTACAAATTTGATCCTGTAGTGCCGACTATGACTCCTCAGGAAGCTGGACACGTTTTAGGCGGACAG GCAAATTTATGGGCAGAACATATTTCTGGGCCAAAAGATTCTGAGTATATGATTTTTCCAAGATTAGCCGCGTTATCAGA AACATTATGGAGTCCGAAAGAAAAGCGTAATTGGAATGATTTTACAACAAGATTATTCTCAATGTTCAAGCGTTATGATT ATCAAGGATTAAATTATGCAAAAAGCGCTTATTTGGTAACCGCTTCTTCTACTGCAGATTTAGCTAACAAACAAGTGAAA GTGGAATTAAAGAATGAATTTCCAAATCCGGATATCCGTTATGTTTTAGGAGATAAAAATATAGATCATCACGCTGTAAA ATATACAAGTCCAATTGAGTTTAAAGAAACAACTGTTTTAAAAGCTTCTTTGTTTCAGGATGAAAAACCAGTTGGAAAAA CATTCACAGACACGATTATTTTCCATAAAGCTGTTGCACACAAAGTTAAGTACTTAACGCCTTTTAATCAAAGTTACAAA GGAGATGCCAATACGATGGTTAATACAATTAGAGGAAGTAAAAATTTCCATGACGGACAATGGCAGGCTTGGCTTGTAAA CGATATGGAGCTGGTAATTGATTTCGAAAAACAGGAAAGTATCGAGCAGGTAATCGTAGGAACTTTAGAAAGTCAGGGCG CTGGAGTTAATTTTCCAATCGAAGTAAAAGTACTGGTTTCTAATGACGGAATTAAATACAAGCAAGTTGGAAAAATAACA CGTCCGTATGCAGTAAATGCTGTTCCTGAACTGAAAGATTTTAAAATCAATTTTCAGAAACAAAACGCACGCTTTGTTAA AGTGATTGCAGGCAACTTAAAGAAAAGTCCTAAAGGAGAAAGCTCTTGGTTATTCGTAGATGAAATTCTAGTAAACTAA
Upstream 100 bases:
>100_bases TAGACAGCTGGCAGGCATGGCCAATGGAAAAATATCTTTTGAGAGGAAAAAATTATCAGTATCAATTTAAAATAACACCA TCATTAAAATAATTTAGAAT
Downstream 100 bases:
>100_bases TTTTCTAACATATAGAAACATAGATTTATTTCTTGAATGAATAAAAAAGGTATAAAAAAAAACTAGTTTCTAACACATAT TTCTATGTGTGTTAATGCAA
Product: beta-N-acetylhexosaminidase
Products: NA
Alternate protein names: Beta-GlcNAcase; Beta-N-acetylhexosaminidase; Beta-NAHase; N-acetyl-beta-glucosaminidase [H]
Number of amino acids: Translated: 772; Mature: 772
Protein sequence:
>772_residues MRIIKSYLIIGFLALVTSSYAQKVFTEKDIRIIPKPTQTLIKTGVFEFNKDTKFVTGNDFQKDAANALASKLAIAAGWKP ETTTKAPASNFVQFKTDPNLKNEAYILDVNPNSIVISAKGNTGFLYGLESIRQLLPEAIESQYAVTSAKWQIPSLTINDE PRFKWRGLMLDLSRHFFDKNYILTTIDRLAMHKMNVLHLHLVDDQGWRIEIKKYPKLTEVGAWRVDQENLSWNARLAVSA DQKGTYGGFFTQDELREIVKYAATKGIEVIPEIEMPAHVSSAIASYPELACFDQKIGVPSGGVWPLTDIYCAGKETTFEF LQNVIDEVITIFPSKYIHIGGDEATKTNWAKCPHCQKRIKDEHLKSVDELQSYFVKRMEKYINSKGKKVIGWDEILEGGL APDATVMSWRGTKGGIEAADQGHDVIMTPETPCYFNFYQGPQNEEPLAFDAYNPLNEVYKFDPVVPTMTPQEAGHVLGGQ ANLWAEHISGPKDSEYMIFPRLAALSETLWSPKEKRNWNDFTTRLFSMFKRYDYQGLNYAKSAYLVTASSTADLANKQVK VELKNEFPNPDIRYVLGDKNIDHHAVKYTSPIEFKETTVLKASLFQDEKPVGKTFTDTIIFHKAVAHKVKYLTPFNQSYK GDANTMVNTIRGSKNFHDGQWQAWLVNDMELVIDFEKQESIEQVIVGTLESQGAGVNFPIEVKVLVSNDGIKYKQVGKIT RPYAVNAVPELKDFKINFQKQNARFVKVIAGNLKKSPKGESSWLFVDEILVN
Sequences:
>Translated_772_residues MRIIKSYLIIGFLALVTSSYAQKVFTEKDIRIIPKPTQTLIKTGVFEFNKDTKFVTGNDFQKDAANALASKLAIAAGWKP ETTTKAPASNFVQFKTDPNLKNEAYILDVNPNSIVISAKGNTGFLYGLESIRQLLPEAIESQYAVTSAKWQIPSLTINDE PRFKWRGLMLDLSRHFFDKNYILTTIDRLAMHKMNVLHLHLVDDQGWRIEIKKYPKLTEVGAWRVDQENLSWNARLAVSA DQKGTYGGFFTQDELREIVKYAATKGIEVIPEIEMPAHVSSAIASYPELACFDQKIGVPSGGVWPLTDIYCAGKETTFEF LQNVIDEVITIFPSKYIHIGGDEATKTNWAKCPHCQKRIKDEHLKSVDELQSYFVKRMEKYINSKGKKVIGWDEILEGGL APDATVMSWRGTKGGIEAADQGHDVIMTPETPCYFNFYQGPQNEEPLAFDAYNPLNEVYKFDPVVPTMTPQEAGHVLGGQ ANLWAEHISGPKDSEYMIFPRLAALSETLWSPKEKRNWNDFTTRLFSMFKRYDYQGLNYAKSAYLVTASSTADLANKQVK VELKNEFPNPDIRYVLGDKNIDHHAVKYTSPIEFKETTVLKASLFQDEKPVGKTFTDTIIFHKAVAHKVKYLTPFNQSYK GDANTMVNTIRGSKNFHDGQWQAWLVNDMELVIDFEKQESIEQVIVGTLESQGAGVNFPIEVKVLVSNDGIKYKQVGKIT RPYAVNAVPELKDFKINFQKQNARFVKVIAGNLKKSPKGESSWLFVDEILVN >Mature_772_residues MRIIKSYLIIGFLALVTSSYAQKVFTEKDIRIIPKPTQTLIKTGVFEFNKDTKFVTGNDFQKDAANALASKLAIAAGWKP ETTTKAPASNFVQFKTDPNLKNEAYILDVNPNSIVISAKGNTGFLYGLESIRQLLPEAIESQYAVTSAKWQIPSLTINDE PRFKWRGLMLDLSRHFFDKNYILTTIDRLAMHKMNVLHLHLVDDQGWRIEIKKYPKLTEVGAWRVDQENLSWNARLAVSA DQKGTYGGFFTQDELREIVKYAATKGIEVIPEIEMPAHVSSAIASYPELACFDQKIGVPSGGVWPLTDIYCAGKETTFEF LQNVIDEVITIFPSKYIHIGGDEATKTNWAKCPHCQKRIKDEHLKSVDELQSYFVKRMEKYINSKGKKVIGWDEILEGGL APDATVMSWRGTKGGIEAADQGHDVIMTPETPCYFNFYQGPQNEEPLAFDAYNPLNEVYKFDPVVPTMTPQEAGHVLGGQ ANLWAEHISGPKDSEYMIFPRLAALSETLWSPKEKRNWNDFTTRLFSMFKRYDYQGLNYAKSAYLVTASSTADLANKQVK VELKNEFPNPDIRYVLGDKNIDHHAVKYTSPIEFKETTVLKASLFQDEKPVGKTFTDTIIFHKAVAHKVKYLTPFNQSYK GDANTMVNTIRGSKNFHDGQWQAWLVNDMELVIDFEKQESIEQVIVGTLESQGAGVNFPIEVKVLVSNDGIKYKQVGKIT RPYAVNAVPELKDFKINFQKQNARFVKVIAGNLKKSPKGESSWLFVDEILVN
Specific function: Unknown
COG id: COG3525
COG function: function code G; N-acetyl-beta-hexosaminidase
Gene ontology:
Cell location: Cell outer membrane; Lipid-anchor (Probable) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glycosyl hydrolase 20 family [H]
Homologues:
Organism=Homo sapiens, GI4504373, Length=437, Percent_Identity=27.6887871853547, Blast_Score=165, Evalue=1e-40, Organism=Homo sapiens, GI189181666, Length=434, Percent_Identity=27.4193548387097, Blast_Score=164, Evalue=4e-40, Organism=Caenorhabditis elegans, GI17569815, Length=429, Percent_Identity=28.4382284382284, Blast_Score=155, Evalue=1e-37, Organism=Drosophila melanogaster, GI281365639, Length=469, Percent_Identity=24.9466950959488, Blast_Score=131, Evalue=2e-30, Organism=Drosophila melanogaster, GI24657474, Length=469, Percent_Identity=24.9466950959488, Blast_Score=131, Evalue=2e-30, Organism=Drosophila melanogaster, GI24657468, Length=469, Percent_Identity=24.9466950959488, Blast_Score=131, Evalue=2e-30, Organism=Drosophila melanogaster, GI17647501, Length=469, Percent_Identity=24.9466950959488, Blast_Score=131, Evalue=2e-30, Organism=Drosophila melanogaster, GI24653074, Length=421, Percent_Identity=27.0783847980998, Blast_Score=118, Evalue=2e-26, Organism=Drosophila melanogaster, GI45551090, Length=421, Percent_Identity=27.0783847980998, Blast_Score=117, Evalue=2e-26, Organism=Drosophila melanogaster, GI17933586, Length=457, Percent_Identity=22.1006564551422, Blast_Score=97, Evalue=6e-20,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR015882 - InterPro: IPR001540 - InterPro: IPR015883 - InterPro: IPR017853 - InterPro: IPR013781 - InterPro: IPR011658 [H]
Pfam domain/function: PF00728 Glyco_hydro_20; PF02838 Glyco_hydro_20b [H]
EC number: =3.2.1.52 [H]
Molecular weight: Translated: 87327; Mature: 87327
Theoretical pI: Translated: 7.47; Mature: 7.47
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRIIKSYLIIGFLALVTSSYAQKVFTEKDIRIIPKPTQTLIKTGVFEFNKDTKFVTGNDF CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCHHHHHHHCCEEECCCCEEEECCCC QKDAANALASKLAIAAGWKPETTTKAPASNFVQFKTDPNLKNEAYILDVNPNSIVISAKG HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCCCCCEEEEEECCCEEEEEECC NTGFLYGLESIRQLLPEAIESQYAVTSAKWQIPSLTINDEPRFKWRGLMLDLSRHFFDKN CCEEEECHHHHHHHHHHHHHCCCEEEECCEECCEEEECCCCCEEEEHHHHHHHHHHCCCC YILTTIDRLAMHKMNVLHLHLVDDQGWRIEIKKYPKLTEVGAWRVDQENLSWNARLAVSA HHHHHHHHHHHHHCCEEEEEEECCCCCEEEEECCCCCHHCCCEEECCCCCCEEEEEEEEC DQKGTYGGFFTQDELREIVKYAATKGIEVIPEIEMPAHVSSAIASYPELACFDQKIGVPS CCCCCCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHCCCCHHHHHHHCCCCC GGVWPLTDIYCAGKETTFEFLQNVIDEVITIFPSKYIHIGGDEATKTNWAKCPHCQKRIK CCCCCCHHEEECCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHH DEHLKSVDELQSYFVKRMEKYINSKGKKVIGWDEILEGGLAPDATVMSWRGTKGGIEAAD HHHHHHHHHHHHHHHHHHHHHHCCCCCEEECHHHHHCCCCCCCCEEEEECCCCCCCCCCC QGHDVIMTPETPCYFNFYQGPQNEEPLAFDAYNPLNEVYKFDPVVPTMTPQEAGHVLGGQ CCCEEEECCCCCEEEEECCCCCCCCCEEEECCCCHHHHHCCCCCCCCCCHHHCCCCCCCC ANLWAEHISGPKDSEYMIFPRLAALSETLWSPKEKRNWNDFTTRLFSMFKRYDYQGLNYA HHHHHHHCCCCCCCCEEEEHHHHHHHHHHCCCHHCCCCHHHHHHHHHHHHHCCCCCCCCC KSAYLVTASSTADLANKQVKVELKNEFPNPDIRYVLGDKNIDHHAVKYTSPIEFKETTVL CCEEEEEECCCHHHCCCEEEEEECCCCCCCCEEEEECCCCCCCCEEEECCCCCCCHHHEE KASLFQDEKPVGKTFTDTIIFHKAVAHKVKYLTPFNQSYKGDANTMVNTIRGSKNFHDGQ EHHHHCCCCCCCCHHHHHHHHHHHHHHHHHEECCCCCCCCCCHHHHHHHHCCCCCCCCCC WQAWLVNDMELVIDFEKQESIEQVIVGTLESQGAGVNFPIEVKVLVSNDGIKYKQVGKIT EEEEEECCEEEEEEEHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEECCCCCHHHHCCCC RPYAVNAVPELKDFKINFQKQNARFVKVIAGNLKKSPKGESSWLFVDEILVN CCEEECCCCCCCCCEEEEECCCCEEEEEEECCCCCCCCCCCCEEEHHHHHCC >Mature Secondary Structure MRIIKSYLIIGFLALVTSSYAQKVFTEKDIRIIPKPTQTLIKTGVFEFNKDTKFVTGNDF CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCHHHHHHHCCEEECCCCEEEECCCC QKDAANALASKLAIAAGWKPETTTKAPASNFVQFKTDPNLKNEAYILDVNPNSIVISAKG HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCCCCCEEEEEECCCEEEEEECC NTGFLYGLESIRQLLPEAIESQYAVTSAKWQIPSLTINDEPRFKWRGLMLDLSRHFFDKN CCEEEECHHHHHHHHHHHHHCCCEEEECCEECCEEEECCCCCEEEEHHHHHHHHHHCCCC YILTTIDRLAMHKMNVLHLHLVDDQGWRIEIKKYPKLTEVGAWRVDQENLSWNARLAVSA HHHHHHHHHHHHHCCEEEEEEECCCCCEEEEECCCCCHHCCCEEECCCCCCEEEEEEEEC DQKGTYGGFFTQDELREIVKYAATKGIEVIPEIEMPAHVSSAIASYPELACFDQKIGVPS CCCCCCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHCCCCHHHHHHHCCCCC GGVWPLTDIYCAGKETTFEFLQNVIDEVITIFPSKYIHIGGDEATKTNWAKCPHCQKRIK CCCCCCHHEEECCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHH DEHLKSVDELQSYFVKRMEKYINSKGKKVIGWDEILEGGLAPDATVMSWRGTKGGIEAAD HHHHHHHHHHHHHHHHHHHHHHCCCCCEEECHHHHHCCCCCCCCEEEEECCCCCCCCCCC QGHDVIMTPETPCYFNFYQGPQNEEPLAFDAYNPLNEVYKFDPVVPTMTPQEAGHVLGGQ CCCEEEECCCCCEEEEECCCCCCCCCEEEECCCCHHHHHCCCCCCCCCCHHHCCCCCCCC ANLWAEHISGPKDSEYMIFPRLAALSETLWSPKEKRNWNDFTTRLFSMFKRYDYQGLNYA HHHHHHHCCCCCCCCEEEEHHHHHHHHHHCCCHHCCCCHHHHHHHHHHHHHCCCCCCCCC KSAYLVTASSTADLANKQVKVELKNEFPNPDIRYVLGDKNIDHHAVKYTSPIEFKETTVL CCEEEEEECCCHHHCCCEEEEEECCCCCCCCEEEEECCCCCCCCEEEECCCCCCCHHHEE KASLFQDEKPVGKTFTDTIIFHKAVAHKVKYLTPFNQSYKGDANTMVNTIRGSKNFHDGQ EHHHHCCCCCCCCHHHHHHHHHHHHHHHHHEECCCCCCCCCCHHHHHHHHCCCCCCCCCC WQAWLVNDMELVIDFEKQESIEQVIVGTLESQGAGVNFPIEVKVLVSNDGIKYKQVGKIT EEEEEECCEEEEEEEHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEECCCCCHHHHCCCC RPYAVNAVPELKDFKINFQKQNARFVKVIAGNLKKSPKGESSWLFVDEILVN CCEEECCCCCCCCCEEEEECCCCEEEEEEECCCCCCCCCCCCEEEHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 7881557; 12949112 [H]