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The map label for this gene is ysgA [H]

Identifier: 146299225

GI number: 146299225

Start: 1680574

End: 1681302

Strand: Direct

Name: ysgA [H]

Synonym: Fjoh_1465

Alternate gene names: 146299225

Gene position: 1680574-1681302 (Clockwise)

Preceding gene: 146299220

Following gene: 146299230

Centisome position: 27.56

GC content: 32.24

Gene sequence:

>729_bases
ATGGTTAGTAAAAACCAAATAAAACTTATATCAAGTTTACATCAAAAAAAGCAGCGTTTTGCAAATCAATTATTTTTTGC
CGAAGGAGTAAAAGTAATTCAGGAATTGCTGCAATCCAATTTTGAATTAGAACATTTATACACTACGTTAAATGATTTTG
AAGAAGTTCAATCTTCAAAACGAACTCTTATTAATGAACAAGAACTAAAAAAAATAAGTGCTTTAACAACTCCAAATTCT
TGTCTGGCAGTTTTTAAAATGCCTGTCGAAAATCAAATTATAAATTCTGGTTTAATTCTGGCTTTAGACGACATTCGTGA
TCCGGGAAATCTGGGCACAATAATGCGTCTCTGCGACTGGTTCGGGATTAAGCAAATTGTTTGTTCTAAAGAAACAGTCG
ATATTTATAATCCAAAAGTGGTTCAGGCCACAATGGGATCTATTGCCAGAGTAAACGTAAATTATGTTGATCTTAAAGCT
TTTTTAAGTCAGACAAAACTTCCTGTTTTTGGAACATTTATGGATGGAGATACAATTTATCAATCTAATTTACCTCAAAA
TGGAATCATTATTATGGGTAATGAAGCCAATGGTATCTCGGCAGAAATTGAAAAAATAGTAACCACCCGGCTTACAATTC
CAAGATTTGGAGAGCTGCAAAAAACCGAAAGTTTAAATGTAGCTACTGCAACAGCAATTATTCTTAGTGAATTTAAACGA
AATAGTTAA

Upstream 100 bases:

>100_bases
ACAGGCGCAAATAAGTATTGCTATTAGAATAAATGCTGTTATTTTTGTGGAATTATTTTTCAAGTGTTTTTTAATATTTA
ATTCAAAAGTACATTATTTT

Downstream 100 bases:

>100_bases
TATTTTGTTTTAATGAAATGTGAAATTTATTAAAATTGCTCTTGATTTCATTGAATCAATGTTGTCTGTCCACGGACTTG
GGCCATTTATAGGTTTATCA

Product: tRNA/rRNA methyltransferase SpoU

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 242; Mature: 242

Protein sequence:

>242_residues
MVSKNQIKLISSLHQKKQRFANQLFFAEGVKVIQELLQSNFELEHLYTTLNDFEEVQSSKRTLINEQELKKISALTTPNS
CLAVFKMPVENQIINSGLILALDDIRDPGNLGTIMRLCDWFGIKQIVCSKETVDIYNPKVVQATMGSIARVNVNYVDLKA
FLSQTKLPVFGTFMDGDTIYQSNLPQNGIIIMGNEANGISAEIEKIVTTRLTIPRFGELQKTESLNVATATAIILSEFKR
NS

Sequences:

>Translated_242_residues
MVSKNQIKLISSLHQKKQRFANQLFFAEGVKVIQELLQSNFELEHLYTTLNDFEEVQSSKRTLINEQELKKISALTTPNS
CLAVFKMPVENQIINSGLILALDDIRDPGNLGTIMRLCDWFGIKQIVCSKETVDIYNPKVVQATMGSIARVNVNYVDLKA
FLSQTKLPVFGTFMDGDTIYQSNLPQNGIIIMGNEANGISAEIEKIVTTRLTIPRFGELQKTESLNVATATAIILSEFKR
NS
>Mature_242_residues
MVSKNQIKLISSLHQKKQRFANQLFFAEGVKVIQELLQSNFELEHLYTTLNDFEEVQSSKRTLINEQELKKISALTTPNS
CLAVFKMPVENQIINSGLILALDDIRDPGNLGTIMRLCDWFGIKQIVCSKETVDIYNPKVVQATMGSIARVNVNYVDLKA
FLSQTKLPVFGTFMDGDTIYQSNLPQNGIIIMGNEANGISAEIEKIVTTRLTIPRFGELQKTESLNVATATAIILSEFKR
NS

Specific function: Unknown

COG id: COG0566

COG function: function code J; rRNA methylases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA methyltransferase TrmH family [H]

Homologues:

Organism=Drosophila melanogaster, GI24666840, Length=277, Percent_Identity=24.9097472924188, Blast_Score=75, Evalue=4e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001537
- InterPro:   IPR013123 [H]

Pfam domain/function: PF00588 SpoU_methylase; PF08032 SpoU_sub_bind [H]

EC number: 2.1.1.- [C]

Molecular weight: Translated: 27119; Mature: 27119

Theoretical pI: Translated: 7.35; Mature: 7.35

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVSKNQIKLISSLHQKKQRFANQLFFAEGVKVIQELLQSNFELEHLYTTLNDFEEVQSSK
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
RTLINEQELKKISALTTPNSCLAVFKMPVENQIINSGLILALDDIRDPGNLGTIMRLCDW
HHHCCHHHHHHHHHCCCCCHHEEEEECCHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHH
FGIKQIVCSKETVDIYNPKVVQATMGSIARVNVNYVDLKAFLSQTKLPVFGTFMDGDTIY
HHHHHHHHCCCCEECCCCEEHHHHHCCEEEEECHHHHHHHHHHHCCCCEEEEEECCCEEE
QSNLPQNGIIIMGNEANGISAEIEKIVTTRLTIPRFGELQKTESLNVATATAIILSEFKR
ECCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCHHCCCCCHHHHHHHHHHHHHC
NS
CC
>Mature Secondary Structure
MVSKNQIKLISSLHQKKQRFANQLFFAEGVKVIQELLQSNFELEHLYTTLNDFEEVQSSK
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
RTLINEQELKKISALTTPNSCLAVFKMPVENQIINSGLILALDDIRDPGNLGTIMRLCDW
HHHCCHHHHHHHHHCCCCCHHEEEEECCHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHH
FGIKQIVCSKETVDIYNPKVVQATMGSIARVNVNYVDLKAFLSQTKLPVFGTFMDGDTIY
HHHHHHHHCCCCEECCCCEEHHHHHCCEEEEECHHHHHHHHHHHCCCCEEEEEECCCEEE
QSNLPQNGIIIMGNEANGISAEIEKIVTTRLTIPRFGELQKTESLNVATATAIILSEFKR
ECCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCHHCCCCCHHHHHHHHHHHHHC
NS
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969504; 9384377 [H]