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The map label for this gene is yciR [C]

Identifier: 146284299

GI number: 146284299

Start: 4321948

End: 4323876

Strand: Direct

Name: yciR [C]

Synonym: PST_3987

Alternate gene names: 146284299

Gene position: 4321948-4323876 (Clockwise)

Preceding gene: 146284298

Following gene: 146284300

Centisome position: 94.63

GC content: 65.16

Gene sequence:

>1929_bases
ATGAACACCTCTCTCGTCCGGCTGAGCCTGGGCTACTTCTGCCTGGCGATGCTGTGGATCCTTCTCGGCGACACCCTGCT
CGGCCAACTGGTGAGCGGTGACGGCCAGGCCTGGCAGATGGGCAAGGGCGCCCTGTTCGTGACGCTCACCAGCGCCCTGC
TGTTCGTGCTCGGTCGCCGGCACGTCCGTCGCTTCGATGAGCAGCAGCGCGCCCAGCATCTGCAGGAAACCAGCCTGAAG
CAGGCCGCCGCGGTTTTCGACAGCACCCAGGAAGGCGTGCTGGTCACCGACCCGCAACAACACATCGTGCACGTCAACCC
TGCGTTCTCGCGGATCACCGGTTACAGCACCGAGGAAGTGCTCGGCCAGACACCGAAGCTCTTCGCCTCCGGCAAGCATG
ACGCCACCTTCTACCGGCAGATGTGGCAGGCGCTGCAGGAAGATGGCGTCTGGAGCGGAGAGATCTGGAACCGGCGCAAG
AACGGCGAGGTGTACCCGCAATGGCAGAATCTGCGCTGCATCTACGACAACGAGGGACAGCTCAGCCACTACGTGGCGGT
TTTCTCCGATCTGTCGGCCCTAAAGCGCTCGCGCGAGGAGCTCGACCAGCTCGCGCATTTCGATCCGCTGGTCAACCTGC
CGAACCGTCTGCTGTTCACCGAACGCGCCAAGCAGGACCTTGAACGCGCCCGGGCGAACAAGCGCAGCGGCGCGCTGCTG
CTGATCGACCTCGACCACTTCAAGGACATCAACGAAAGCCTTGGTCACAACCTCGGCGACACCCTGCTGCAGGCCGTCAG
CGCGCGCCTGAGCGAGCAGCTGGAGAGCGGCATGACCCTCGGCCGCCTGGGCGGCGACGAGTTCGCCCTGCTCTGCGAGG
ACTACGGCGCGGAAAAGGCAACCGCCCTGGCGCTACGCATCCTCGATCGCCTGAACGAGCCTTTCCGGCTCGGCGAGCGG
GAGCTGTTCAGCAGCGCCAGCATCGGCATCGTGCTCTATCCCTACCCCACCGACGTGCAGAACGTCGAACAGCTGATGCG
CAATGCCGATTCGGCGCTGTTCAAGGCCAAGAGCAGCGGCCGCTCCACCTACGCTTTCTACTCTCAGGAGCTGACCAGCC
AGGCGCGCCAGCGCGTGGAGCTGGTCACCGCATTGCGTCAGGCATTGGAGCAGGGGCAACTGCGCCTGCACTACCAGCCG
ATCTACGACCTGCGCCAGGGCAGCATCAGCGGGTTCGAGGCGCTGGTGCGCTGGCAGCACCCGGAGAAGGGCCTGATCTC
GCCCGCCGTGTTCATCCCCATCGCCGAGGAGACCGGGCTGATCAGCGCCATCGATCACTGGGTTCTCCAGCAGGCCTGCC
ACCAGGCCCGGGAATGGCTCGGCCAGGGTCGCCCACTCGGCTTCATCGCGGTGAACATTTCCAGCCGGCTGTTCGGCAAC
GGCGACCTCGACCTGCAGATTGCCACTGTCCTGGCCAGCAGCGGGCTGGCAGCGCGCCATCTGGAGCTGGAAATCACCGA
AAGCGCCGTCATGCAGGATCCGGACGGTGCACTGGAACTGCTGCAACGGCTGCGCACCCTCGGCGTTCAGCTGGCCATCG
ACGACTTCGGCACCGGTTATTCCTCGCTACAGCGTCTCAAACGCATGAACGTGCACAAGCTCAAGATCGACCAGGGCTTC
GTCCGCGGCTTGCCGGCGGACCGCGAAGACGCCGCCATCACCCGCTCGGTGATCGGCCTGGCACATAACCTCGGCCTGAA
AGTGGTTGCCGAGGGGATCGAGATTGCGGACCAGGCGGCGTTCCTTCTGGAGCAGAACTGCGACTATGGCCAGGGCTACG
GTTTCGCCCGACCGAGACCGGCCGACGAGATCGACTGGCAGCCCACCGCGCTCGACTACGGACAGCGCTGCCGCTCGTCG
AGACCCTGA

Upstream 100 bases:

>100_bases
AGCAGGACGCAGCACTACCGGTGCCTGATGACCTAGCGCCCGCTCGCCATGGTGCGATGGGGTTTGACTGTGCAGTATTC
GATCGGACCCAAGAGCAACG

Downstream 100 bases:

>100_bases
CGAAGCGCTTATATCAATAGGCCATCACCGGGGGTAAGCTGACAGAACGGTCAAGGACCGCATTCCGAGAGCCCAGGTCG
AAACCGGCAGGCGTTGCGCC

Product: sensory box protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 642; Mature: 642

Protein sequence:

>642_residues
MNTSLVRLSLGYFCLAMLWILLGDTLLGQLVSGDGQAWQMGKGALFVTLTSALLFVLGRRHVRRFDEQQRAQHLQETSLK
QAAAVFDSTQEGVLVTDPQQHIVHVNPAFSRITGYSTEEVLGQTPKLFASGKHDATFYRQMWQALQEDGVWSGEIWNRRK
NGEVYPQWQNLRCIYDNEGQLSHYVAVFSDLSALKRSREELDQLAHFDPLVNLPNRLLFTERAKQDLERARANKRSGALL
LIDLDHFKDINESLGHNLGDTLLQAVSARLSEQLESGMTLGRLGGDEFALLCEDYGAEKATALALRILDRLNEPFRLGER
ELFSSASIGIVLYPYPTDVQNVEQLMRNADSALFKAKSSGRSTYAFYSQELTSQARQRVELVTALRQALEQGQLRLHYQP
IYDLRQGSISGFEALVRWQHPEKGLISPAVFIPIAEETGLISAIDHWVLQQACHQAREWLGQGRPLGFIAVNISSRLFGN
GDLDLQIATVLASSGLAARHLELEITESAVMQDPDGALELLQRLRTLGVQLAIDDFGTGYSSLQRLKRMNVHKLKIDQGF
VRGLPADREDAAITRSVIGLAHNLGLKVVAEGIEIADQAAFLLEQNCDYGQGYGFARPRPADEIDWQPTALDYGQRCRSS
RP

Sequences:

>Translated_642_residues
MNTSLVRLSLGYFCLAMLWILLGDTLLGQLVSGDGQAWQMGKGALFVTLTSALLFVLGRRHVRRFDEQQRAQHLQETSLK
QAAAVFDSTQEGVLVTDPQQHIVHVNPAFSRITGYSTEEVLGQTPKLFASGKHDATFYRQMWQALQEDGVWSGEIWNRRK
NGEVYPQWQNLRCIYDNEGQLSHYVAVFSDLSALKRSREELDQLAHFDPLVNLPNRLLFTERAKQDLERARANKRSGALL
LIDLDHFKDINESLGHNLGDTLLQAVSARLSEQLESGMTLGRLGGDEFALLCEDYGAEKATALALRILDRLNEPFRLGER
ELFSSASIGIVLYPYPTDVQNVEQLMRNADSALFKAKSSGRSTYAFYSQELTSQARQRVELVTALRQALEQGQLRLHYQP
IYDLRQGSISGFEALVRWQHPEKGLISPAVFIPIAEETGLISAIDHWVLQQACHQAREWLGQGRPLGFIAVNISSRLFGN
GDLDLQIATVLASSGLAARHLELEITESAVMQDPDGALELLQRLRTLGVQLAIDDFGTGYSSLQRLKRMNVHKLKIDQGF
VRGLPADREDAAITRSVIGLAHNLGLKVVAEGIEIADQAAFLLEQNCDYGQGYGFARPRPADEIDWQPTALDYGQRCRSS
RP
>Mature_642_residues
MNTSLVRLSLGYFCLAMLWILLGDTLLGQLVSGDGQAWQMGKGALFVTLTSALLFVLGRRHVRRFDEQQRAQHLQETSLK
QAAAVFDSTQEGVLVTDPQQHIVHVNPAFSRITGYSTEEVLGQTPKLFASGKHDATFYRQMWQALQEDGVWSGEIWNRRK
NGEVYPQWQNLRCIYDNEGQLSHYVAVFSDLSALKRSREELDQLAHFDPLVNLPNRLLFTERAKQDLERARANKRSGALL
LIDLDHFKDINESLGHNLGDTLLQAVSARLSEQLESGMTLGRLGGDEFALLCEDYGAEKATALALRILDRLNEPFRLGER
ELFSSASIGIVLYPYPTDVQNVEQLMRNADSALFKAKSSGRSTYAFYSQELTSQARQRVELVTALRQALEQGQLRLHYQP
IYDLRQGSISGFEALVRWQHPEKGLISPAVFIPIAEETGLISAIDHWVLQQACHQAREWLGQGRPLGFIAVNISSRLFGN
GDLDLQIATVLASSGLAARHLELEITESAVMQDPDGALELLQRLRTLGVQLAIDDFGTGYSSLQRLKRMNVHKLKIDQGF
VRGLPADREDAAITRSVIGLAHNLGLKVVAEGIEIADQAAFLLEQNCDYGQGYGFARPRPADEIDWQPTALDYGQRCRSS
RP

Specific function: Unknown

COG id: COG2200

COG function: function code T; FOG: EAL domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=546, Percent_Identity=34.0659340659341, Blast_Score=303, Evalue=2e-83,
Organism=Escherichia coli, GI87081921, Length=512, Percent_Identity=31.25, Blast_Score=249, Evalue=5e-67,
Organism=Escherichia coli, GI226510982, Length=433, Percent_Identity=30.4849884526559, Blast_Score=183, Evalue=3e-47,
Organism=Escherichia coli, GI1788849, Length=429, Percent_Identity=30.5361305361305, Blast_Score=155, Evalue=7e-39,
Organism=Escherichia coli, GI1790496, Length=236, Percent_Identity=36.0169491525424, Blast_Score=154, Evalue=1e-38,
Organism=Escherichia coli, GI87081743, Length=239, Percent_Identity=34.3096234309623, Blast_Score=142, Evalue=6e-35,
Organism=Escherichia coli, GI1787055, Length=390, Percent_Identity=25.3846153846154, Blast_Score=140, Evalue=4e-34,
Organism=Escherichia coli, GI87081845, Length=235, Percent_Identity=34.468085106383, Blast_Score=139, Evalue=8e-34,
Organism=Escherichia coli, GI1788502, Length=242, Percent_Identity=33.8842975206612, Blast_Score=138, Evalue=1e-33,
Organism=Escherichia coli, GI1786507, Length=241, Percent_Identity=30.7053941908714, Blast_Score=128, Evalue=9e-31,
Organism=Escherichia coli, GI87081980, Length=243, Percent_Identity=32.9218106995885, Blast_Score=124, Evalue=2e-29,
Organism=Escherichia coli, GI87082096, Length=261, Percent_Identity=29.5019157088123, Blast_Score=117, Evalue=3e-27,
Organism=Escherichia coli, GI1788381, Length=513, Percent_Identity=24.5614035087719, Blast_Score=114, Evalue=2e-26,
Organism=Escherichia coli, GI1786584, Length=175, Percent_Identity=29.1428571428571, Blast_Score=92, Evalue=7e-20,
Organism=Escherichia coli, GI1787262, Length=179, Percent_Identity=33.5195530726257, Blast_Score=89, Evalue=7e-19,
Organism=Escherichia coli, GI1789650, Length=420, Percent_Identity=23.0952380952381, Blast_Score=89, Evalue=1e-18,
Organism=Escherichia coli, GI87081977, Length=187, Percent_Identity=31.0160427807487, Blast_Score=80, Evalue=3e-16,
Organism=Escherichia coli, GI87081881, Length=178, Percent_Identity=30.3370786516854, Blast_Score=73, Evalue=5e-14,
Organism=Escherichia coli, GI87082007, Length=160, Percent_Identity=32.5, Blast_Score=73, Evalue=7e-14,
Organism=Escherichia coli, GI145693134, Length=168, Percent_Identity=32.1428571428571, Blast_Score=72, Evalue=7e-14,
Organism=Escherichia coli, GI1788956, Length=166, Percent_Identity=33.1325301204819, Blast_Score=66, Evalue=9e-12,
Organism=Escherichia coli, GI1787802, Length=127, Percent_Identity=28.3464566929134, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI1787056, Length=131, Percent_Identity=34.3511450381679, Blast_Score=64, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 71782; Mature: 71782

Theoretical pI: Translated: 6.10; Mature: 6.10

Prosite motif: PS50112 PAS ; PS50113 PAC ; PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNTSLVRLSLGYFCLAMLWILLGDTLLGQLVSGDGQAWQMGKGALFVTLTSALLFVLGRR
CCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCHHHHHHHHHHHHHHHH
HVRRFDEQQRAQHLQETSLKQAAAVFDSTQEGVLVTDPQQHIVHVNPAFSRITGYSTEEV
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCHHHEEECCCHHHHHCCCCHHHH
LGQTPKLFASGKHDATFYRQMWQALQEDGVWSGEIWNRRKNGEVYPQWQNLRCIYDNEGQ
HCCCCHHHCCCCCCHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCCCCCCCCEEEECCCCC
LSHYVAVFSDLSALKRSREELDQLAHFDPLVNLPNRLLFTERAKQDLERARANKRSGALL
HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCHHHHHHHHHHHHHHHHHCCCCCCEEE
LIDLDHFKDINESLGHNLGDTLLQAVSARLSEQLESGMTLGRLGGDEFALLCEDYGAEKA
EEECHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCEEECCCCCCEEEEEHHCCCHHH
TALALRILDRLNEPFRLGERELFSSASIGIVLYPYPTDVQNVEQLMRNADSALFKAKSSG
HHHHHHHHHHCCCCHHCCHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHCCC
RSTYAFYSQELTSQARQRVELVTALRQALEQGQLRLHYQPIYDLRQGSISGFEALVRWQH
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHCCCHHHHHHHHHCCC
PEKGLISPAVFIPIAEETGLISAIDHWVLQQACHQAREWLGQGRPLGFIAVNISSRLFGN
CCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCC
GDLDLQIATVLASSGLAARHLELEITESAVMQDPDGALELLQRLRTLGVQLAIDDFGTGY
CCCCEEHHHHHHHCCCEEEEEEEEEHHHHHHCCCCHHHHHHHHHHHCCEEEEECCCCCCH
SSLQRLKRMNVHKLKIDQGFVRGLPADREDAAITRSVIGLAHNLGLKVVAEGIEIADQAA
HHHHHHHHCCCCEEEECCHHHHCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
FLLEQNCDYGQGYGFARPRPADEIDWQPTALDYGQRCRSSRP
HHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCC
>Mature Secondary Structure
MNTSLVRLSLGYFCLAMLWILLGDTLLGQLVSGDGQAWQMGKGALFVTLTSALLFVLGRR
CCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCHHHHHHHHHHHHHHHH
HVRRFDEQQRAQHLQETSLKQAAAVFDSTQEGVLVTDPQQHIVHVNPAFSRITGYSTEEV
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCHHHEEECCCHHHHHCCCCHHHH
LGQTPKLFASGKHDATFYRQMWQALQEDGVWSGEIWNRRKNGEVYPQWQNLRCIYDNEGQ
HCCCCHHHCCCCCCHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCCCCCCCCEEEECCCCC
LSHYVAVFSDLSALKRSREELDQLAHFDPLVNLPNRLLFTERAKQDLERARANKRSGALL
HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCHHHHHHHHHHHHHHHHHCCCCCCEEE
LIDLDHFKDINESLGHNLGDTLLQAVSARLSEQLESGMTLGRLGGDEFALLCEDYGAEKA
EEECHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCEEECCCCCCEEEEEHHCCCHHH
TALALRILDRLNEPFRLGERELFSSASIGIVLYPYPTDVQNVEQLMRNADSALFKAKSSG
HHHHHHHHHHCCCCHHCCHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHCCC
RSTYAFYSQELTSQARQRVELVTALRQALEQGQLRLHYQPIYDLRQGSISGFEALVRWQH
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHCCCHHHHHHHHHCCC
PEKGLISPAVFIPIAEETGLISAIDHWVLQQACHQAREWLGQGRPLGFIAVNISSRLFGN
CCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCC
GDLDLQIATVLASSGLAARHLELEITESAVMQDPDGALELLQRLRTLGVQLAIDDFGTGY
CCCCEEHHHHHHHCCCEEEEEEEEEHHHHHHCCCCHHHHHHHHHHHCCEEEEECCCCCCH
SSLQRLKRMNVHKLKIDQGFVRGLPADREDAAITRSVIGLAHNLGLKVVAEGIEIADQAA
HHHHHHHHCCCCEEEECCHHHHCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
FLLEQNCDYGQGYGFARPRPADEIDWQPTALDYGQRCRSSRP
HHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]