| Definition | Pseudomonas stutzeri A1501, complete genome. |
|---|---|
| Accession | NC_009434 |
| Length | 4,567,418 |
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The map label for this gene is yrbH [C]
Identifier: 146284211
GI number: 146284211
Start: 4227952
End: 4229910
Strand: Direct
Name: yrbH [C]
Synonym: PST_3899
Alternate gene names: 146284211
Gene position: 4227952-4229910 (Clockwise)
Preceding gene: 146284210
Following gene: 146284212
Centisome position: 92.57
GC content: 63.76
Gene sequence:
>1959_bases ATGAACAAAAAATGGAAGCCGACCATGAGCACACCTGACGCCTTCGCCCAAGCTGGGAAGACGGCCGTACTACAGAACAT CCACGGCACCATGGAGTTCCTGCGCAAGTACGCCCCCTTCAACCAGATGGAGCCGGCCCACCTGGCCTATCTGGTGGAGA ACTGTGAGCTGCGCTTCTATGCCGAAGGCGACTGCATCATTTCTCCCGAAGACGGCGTGGTGCAGCACTTCTATATCGTC AAGCAGGGCCGCGTGCACGGTCAGCGCCCGCACACCGCCAAGCGCGGCACCGATACCACCTTCGAGGTCATCGTCGGCGA GTGCTTTCCGATGGCGGCGCTGATGGGCGAGCGGGCGACCCGTACCGCACACCTGGCTGCCGAGGACACCTTCTGCTTCC TGCTCAACAAACCGGCCTTCGTCAACCTGGTGTCCAACTCGCCGGTGTTTCGCGACTTCGCCATGCGCGGCGTGAGCAGC CTGCTGGATCTGGTCAATCAGCAGGCGCAGATGCGCGCGGTGGAGAGCCTCGGCGAGAACTTCTCGCTGGAAACCAGCAT CGGCGAGCTGGCCCTGCATCATCCCGTCTCCTGCCTGCCGTCCCGCCCGCTCAACGAAGCGGTGGCGATGATGCAAGAGG AGAACGTCGGCAGCATCGTCATCGTCGACGAAGCGCTGCATCCGCAGGGCATCTTTACGTTGCGTGACCTGCGACGAGCC ATCGGTACGGGCACCACAGACCTGAGTCAGCCGATCGCCCAGTTCATGACCCACGATCCGTTCTACCTGCCGCCGGACGC CACCGCGTTCGATGCGGCCATCGCCATGACCGAGCGGCATATCGCTCATGTCTGCGTGGTGGACAACGGCCTGCTGCGCG GTGTGATCTCCGAGCGCGACCTGTTTTCCCTGCAGCGCGTGGACCTGGTGCATCTGGCCCAGACCATCCGCCATGCCGAT CGCGTCGACGCCCTGGTGGTCATCCGCAACCGCATCAAGCAGCTGGTCGACAACATGCTGGCCCACGGTGCCTCGTCGAC GCAGATCACCCGCATCGTCACCCTTCTCAACGATCACACGGTGTGTAGGGTCATCGAACTGGCCATCGCGCATATGGGCG ATCCAGGCGTGCCGTTCACCTGGCTGTGCTTCGGCAGCGAAGGGCGCCAGGAGCAGACCCTGCACACCGACCAGGACAAC GGCATTCTCTTCGAGGCCGCCGATGCCGCCGAGGCCGCGCACATCCGCGGTCGCCTGCTGCCGCTGGCCGAGCGTATCAA CCGTGACCTCGACACCTGCGGCTTCACCCTGTGCAAGGGCAACATCATGGCCAGCAATCCGCAGCTGTGCCTGTCGCGGC AGGAATGGAGCCGCCGCTTCAGCTCCTTTGTCCGTGAGGCGACGCCGGAAAACCTGCTCGGCAGCACCATCTATTTCGAC CTGCGCAGCATCTGGGGCCCGGCCGAAGGTTGCGAGCAGCTGCGCCAGGATCTGCTCGACGAGATCAAGGACAACAGCCT GTTCCAGCGCATGATGGCGGACAACGCCCTGCGCCATCGCCCCCCGGTCGGCCGCTTCCGCGACTTCGTGGTGGCACGCA AGGGCGAAGGCAAAGACACCCTGGACCTGAAGGTGCAGGGACTGACTCCGTTCGTCGACGGCGCACGCCTGCTGGCGCTG AGCAACGACATCGGCACCTGCAACACCCTCGAGCGCCTGCGCAAGCTGGTGGAAAAGGGCGTGATCGAACCCAAGGATGG CGCGGCCTACGAAGAGGCCTACCACTTCATCCAGCAGACCCGCATGCAGCAGCATCAGCAGCAGGCACGCGATGGACTGC CCTATTCCAATCGCCTGGATCCGGATACGCTCAATGTGTTGGATCGACGCATCCTGCGCGAGTCCTTTCGCCAGGCCCAG CGTCTCCAGGCCAGCCTCGCGGTGCGCTATCAACTATGA
Upstream 100 bases:
>100_bases CGCAACAGCCCGAAACATCGGGCTGACTCTGATCAGCTTCCGCAGCGCCCGGCCTGACTAGACTTACGTCCAATTGGGTC CGACCGACCCGCAGCCCACC
Downstream 100 bases:
>100_bases GCATGTTCTGGTTCAACCCACGCGGTCCGAAGTTGCCCCCGGAGCAGCAGCAACGCGTTGCCGAGCTGCCGCGCCCGGAA CTGCCGCAGCCCGTTCCGCT
Product: nucleotidyltransferase, putative
Products: NA
Alternate protein names: Signal-Transduction Protein; Nucleotidyltransferase; Signal Transduction Protein; Signal Transduction Protein With CBS Domains; Signal-Transduction Protein With CBS Domains; Nucleotidyltransferase Family; CBS Domain Protein; Signal Protein; Inosine-5-Monophosphate Dehydrogenase; Nucleotidyltransferase Domain Family Protein; DNA Polymerase III Subunit Epsilon; CBS Signal-Transduction Protein; Cyclic-Nucleotide Signal Transduction Protein; Multidomain-Containing Protein; Cyclic Nucleotide-Regulated Nucleotidyltransferase; Nucleotidyltransferases; Methyl-Accepting Chemotaxis Protein A
Number of amino acids: Translated: 652; Mature: 652
Protein sequence:
>652_residues MNKKWKPTMSTPDAFAQAGKTAVLQNIHGTMEFLRKYAPFNQMEPAHLAYLVENCELRFYAEGDCIISPEDGVVQHFYIV KQGRVHGQRPHTAKRGTDTTFEVIVGECFPMAALMGERATRTAHLAAEDTFCFLLNKPAFVNLVSNSPVFRDFAMRGVSS LLDLVNQQAQMRAVESLGENFSLETSIGELALHHPVSCLPSRPLNEAVAMMQEENVGSIVIVDEALHPQGIFTLRDLRRA IGTGTTDLSQPIAQFMTHDPFYLPPDATAFDAAIAMTERHIAHVCVVDNGLLRGVISERDLFSLQRVDLVHLAQTIRHAD RVDALVVIRNRIKQLVDNMLAHGASSTQITRIVTLLNDHTVCRVIELAIAHMGDPGVPFTWLCFGSEGRQEQTLHTDQDN GILFEAADAAEAAHIRGRLLPLAERINRDLDTCGFTLCKGNIMASNPQLCLSRQEWSRRFSSFVREATPENLLGSTIYFD LRSIWGPAEGCEQLRQDLLDEIKDNSLFQRMMADNALRHRPPVGRFRDFVVARKGEGKDTLDLKVQGLTPFVDGARLLAL SNDIGTCNTLERLRKLVEKGVIEPKDGAAYEEAYHFIQQTRMQQHQQQARDGLPYSNRLDPDTLNVLDRRILRESFRQAQ RLQASLAVRYQL
Sequences:
>Translated_652_residues MNKKWKPTMSTPDAFAQAGKTAVLQNIHGTMEFLRKYAPFNQMEPAHLAYLVENCELRFYAEGDCIISPEDGVVQHFYIV KQGRVHGQRPHTAKRGTDTTFEVIVGECFPMAALMGERATRTAHLAAEDTFCFLLNKPAFVNLVSNSPVFRDFAMRGVSS LLDLVNQQAQMRAVESLGENFSLETSIGELALHHPVSCLPSRPLNEAVAMMQEENVGSIVIVDEALHPQGIFTLRDLRRA IGTGTTDLSQPIAQFMTHDPFYLPPDATAFDAAIAMTERHIAHVCVVDNGLLRGVISERDLFSLQRVDLVHLAQTIRHAD RVDALVVIRNRIKQLVDNMLAHGASSTQITRIVTLLNDHTVCRVIELAIAHMGDPGVPFTWLCFGSEGRQEQTLHTDQDN GILFEAADAAEAAHIRGRLLPLAERINRDLDTCGFTLCKGNIMASNPQLCLSRQEWSRRFSSFVREATPENLLGSTIYFD LRSIWGPAEGCEQLRQDLLDEIKDNSLFQRMMADNALRHRPPVGRFRDFVVARKGEGKDTLDLKVQGLTPFVDGARLLAL SNDIGTCNTLERLRKLVEKGVIEPKDGAAYEEAYHFIQQTRMQQHQQQARDGLPYSNRLDPDTLNVLDRRILRESFRQAQ RLQASLAVRYQL >Mature_652_residues MNKKWKPTMSTPDAFAQAGKTAVLQNIHGTMEFLRKYAPFNQMEPAHLAYLVENCELRFYAEGDCIISPEDGVVQHFYIV KQGRVHGQRPHTAKRGTDTTFEVIVGECFPMAALMGERATRTAHLAAEDTFCFLLNKPAFVNLVSNSPVFRDFAMRGVSS LLDLVNQQAQMRAVESLGENFSLETSIGELALHHPVSCLPSRPLNEAVAMMQEENVGSIVIVDEALHPQGIFTLRDLRRA IGTGTTDLSQPIAQFMTHDPFYLPPDATAFDAAIAMTERHIAHVCVVDNGLLRGVISERDLFSLQRVDLVHLAQTIRHAD RVDALVVIRNRIKQLVDNMLAHGASSTQITRIVTLLNDHTVCRVIELAIAHMGDPGVPFTWLCFGSEGRQEQTLHTDQDN GILFEAADAAEAAHIRGRLLPLAERINRDLDTCGFTLCKGNIMASNPQLCLSRQEWSRRFSSFVREATPENLLGSTIYFD LRSIWGPAEGCEQLRQDLLDEIKDNSLFQRMMADNALRHRPPVGRFRDFVVARKGEGKDTLDLKVQGLTPFVDGARLLAL SNDIGTCNTLERLRKLVEKGVIEPKDGAAYEEAYHFIQQTRMQQHQQQARDGLPYSNRLDPDTLNVLDRRILRESFRQAQ RLQASLAVRYQL
Specific function: Unknown
COG id: COG2905
COG function: function code T; Predicted signal-transduction protein containing cAMP-binding and CBS domains
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 73174; Mature: 73174
Theoretical pI: Translated: 6.58; Mature: 6.58
Prosite motif: PS50042 CNMP_BINDING_3
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.0 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 4.8 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 4.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNKKWKPTMSTPDAFAQAGKTAVLQNIHGTMEFLRKYAPFNQMEPAHLAYLVENCELRFY CCCCCCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCEEEE AEGDCIISPEDGVVQHFYIVKQGRVHGQRPHTAKRGTDTTFEVIVGECFPMAALMGERAT ECCCEEECCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCHHH RTAHLAAEDTFCFLLNKPAFVNLVSNSPVFRDFAMRGVSSLLDLVNQQAQMRAVESLGEN HHHEEECCCCEEEEECCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC FSLETSIGELALHHPVSCLPSRPLNEAVAMMQEENVGSIVIVDEALHPQGIFTLRDLRRA CEEECCHHHHHHHCCHHHCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHH IGTGTTDLSQPIAQFMTHDPFYLPPDATAFDAAIAMTERHIAHVCVVDNGLLRGVISERD HCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHEEEEEECCHHHHHHHCHHH LFSLQRVDLVHLAQTIRHADRVDALVVIRNRIKQLVDNMLAHGASSTQITRIVTLLNDHT HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCH VCRVIELAIAHMGDPGVPFTWLCFGSEGRQEQTLHTDQDNGILFEAADAAEAAHIRGRLL HHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHH PLAERINRDLDTCGFTLCKGNIMASNPQLCLSRQEWSRRFSSFVREATPENLLGSTIYFD HHHHHHCCCHHHCCCEEECCCEEECCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH LRSIWGPAEGCEQLRQDLLDEIKDNSLFQRMMADNALRHRPPVGRFRDFVVARKGEGKDT HHHHCCCHHHHHHHHHHHHHHHCCHHHHHHHHHCCHHHCCCCHHHHHHHHEEECCCCCCE LDLKVQGLTPFVDGARLLALSNDIGTCNTLERLRKLVEKGVIEPKDGAAYEEAYHFIQQT EEEEEECCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH RMQQHQQQARDGLPYSNRLDPDTLNVLDRRILRESFRQAQRLQASLAVRYQL HHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEECC >Mature Secondary Structure MNKKWKPTMSTPDAFAQAGKTAVLQNIHGTMEFLRKYAPFNQMEPAHLAYLVENCELRFY CCCCCCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCEEEE AEGDCIISPEDGVVQHFYIVKQGRVHGQRPHTAKRGTDTTFEVIVGECFPMAALMGERAT ECCCEEECCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCHHH RTAHLAAEDTFCFLLNKPAFVNLVSNSPVFRDFAMRGVSSLLDLVNQQAQMRAVESLGEN HHHEEECCCCEEEEECCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC FSLETSIGELALHHPVSCLPSRPLNEAVAMMQEENVGSIVIVDEALHPQGIFTLRDLRRA CEEECCHHHHHHHCCHHHCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHH IGTGTTDLSQPIAQFMTHDPFYLPPDATAFDAAIAMTERHIAHVCVVDNGLLRGVISERD HCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHEEEEEECCHHHHHHHCHHH LFSLQRVDLVHLAQTIRHADRVDALVVIRNRIKQLVDNMLAHGASSTQITRIVTLLNDHT HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCH VCRVIELAIAHMGDPGVPFTWLCFGSEGRQEQTLHTDQDNGILFEAADAAEAAHIRGRLL HHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHH PLAERINRDLDTCGFTLCKGNIMASNPQLCLSRQEWSRRFSSFVREATPENLLGSTIYFD HHHHHHCCCHHHCCCEEECCCEEECCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH LRSIWGPAEGCEQLRQDLLDEIKDNSLFQRMMADNALRHRPPVGRFRDFVVARKGEGKDT HHHHCCCHHHHHHHHHHHHHHHCCHHHHHHHHHCCHHHCCCCHHHHHHHHEEECCCCCCE LDLKVQGLTPFVDGARLLALSNDIGTCNTLERLRKLVEKGVIEPKDGAAYEEAYHFIQQT EEEEEECCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH RMQQHQQQARDGLPYSNRLDPDTLNVLDRRILRESFRQAQRLQASLAVRYQL HHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA