Definition Pseudomonas stutzeri A1501, complete genome.
Accession NC_009434
Length 4,567,418

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The map label for this gene is yrbH [C]

Identifier: 146284211

GI number: 146284211

Start: 4227952

End: 4229910

Strand: Direct

Name: yrbH [C]

Synonym: PST_3899

Alternate gene names: 146284211

Gene position: 4227952-4229910 (Clockwise)

Preceding gene: 146284210

Following gene: 146284212

Centisome position: 92.57

GC content: 63.76

Gene sequence:

>1959_bases
ATGAACAAAAAATGGAAGCCGACCATGAGCACACCTGACGCCTTCGCCCAAGCTGGGAAGACGGCCGTACTACAGAACAT
CCACGGCACCATGGAGTTCCTGCGCAAGTACGCCCCCTTCAACCAGATGGAGCCGGCCCACCTGGCCTATCTGGTGGAGA
ACTGTGAGCTGCGCTTCTATGCCGAAGGCGACTGCATCATTTCTCCCGAAGACGGCGTGGTGCAGCACTTCTATATCGTC
AAGCAGGGCCGCGTGCACGGTCAGCGCCCGCACACCGCCAAGCGCGGCACCGATACCACCTTCGAGGTCATCGTCGGCGA
GTGCTTTCCGATGGCGGCGCTGATGGGCGAGCGGGCGACCCGTACCGCACACCTGGCTGCCGAGGACACCTTCTGCTTCC
TGCTCAACAAACCGGCCTTCGTCAACCTGGTGTCCAACTCGCCGGTGTTTCGCGACTTCGCCATGCGCGGCGTGAGCAGC
CTGCTGGATCTGGTCAATCAGCAGGCGCAGATGCGCGCGGTGGAGAGCCTCGGCGAGAACTTCTCGCTGGAAACCAGCAT
CGGCGAGCTGGCCCTGCATCATCCCGTCTCCTGCCTGCCGTCCCGCCCGCTCAACGAAGCGGTGGCGATGATGCAAGAGG
AGAACGTCGGCAGCATCGTCATCGTCGACGAAGCGCTGCATCCGCAGGGCATCTTTACGTTGCGTGACCTGCGACGAGCC
ATCGGTACGGGCACCACAGACCTGAGTCAGCCGATCGCCCAGTTCATGACCCACGATCCGTTCTACCTGCCGCCGGACGC
CACCGCGTTCGATGCGGCCATCGCCATGACCGAGCGGCATATCGCTCATGTCTGCGTGGTGGACAACGGCCTGCTGCGCG
GTGTGATCTCCGAGCGCGACCTGTTTTCCCTGCAGCGCGTGGACCTGGTGCATCTGGCCCAGACCATCCGCCATGCCGAT
CGCGTCGACGCCCTGGTGGTCATCCGCAACCGCATCAAGCAGCTGGTCGACAACATGCTGGCCCACGGTGCCTCGTCGAC
GCAGATCACCCGCATCGTCACCCTTCTCAACGATCACACGGTGTGTAGGGTCATCGAACTGGCCATCGCGCATATGGGCG
ATCCAGGCGTGCCGTTCACCTGGCTGTGCTTCGGCAGCGAAGGGCGCCAGGAGCAGACCCTGCACACCGACCAGGACAAC
GGCATTCTCTTCGAGGCCGCCGATGCCGCCGAGGCCGCGCACATCCGCGGTCGCCTGCTGCCGCTGGCCGAGCGTATCAA
CCGTGACCTCGACACCTGCGGCTTCACCCTGTGCAAGGGCAACATCATGGCCAGCAATCCGCAGCTGTGCCTGTCGCGGC
AGGAATGGAGCCGCCGCTTCAGCTCCTTTGTCCGTGAGGCGACGCCGGAAAACCTGCTCGGCAGCACCATCTATTTCGAC
CTGCGCAGCATCTGGGGCCCGGCCGAAGGTTGCGAGCAGCTGCGCCAGGATCTGCTCGACGAGATCAAGGACAACAGCCT
GTTCCAGCGCATGATGGCGGACAACGCCCTGCGCCATCGCCCCCCGGTCGGCCGCTTCCGCGACTTCGTGGTGGCACGCA
AGGGCGAAGGCAAAGACACCCTGGACCTGAAGGTGCAGGGACTGACTCCGTTCGTCGACGGCGCACGCCTGCTGGCGCTG
AGCAACGACATCGGCACCTGCAACACCCTCGAGCGCCTGCGCAAGCTGGTGGAAAAGGGCGTGATCGAACCCAAGGATGG
CGCGGCCTACGAAGAGGCCTACCACTTCATCCAGCAGACCCGCATGCAGCAGCATCAGCAGCAGGCACGCGATGGACTGC
CCTATTCCAATCGCCTGGATCCGGATACGCTCAATGTGTTGGATCGACGCATCCTGCGCGAGTCCTTTCGCCAGGCCCAG
CGTCTCCAGGCCAGCCTCGCGGTGCGCTATCAACTATGA

Upstream 100 bases:

>100_bases
CGCAACAGCCCGAAACATCGGGCTGACTCTGATCAGCTTCCGCAGCGCCCGGCCTGACTAGACTTACGTCCAATTGGGTC
CGACCGACCCGCAGCCCACC

Downstream 100 bases:

>100_bases
GCATGTTCTGGTTCAACCCACGCGGTCCGAAGTTGCCCCCGGAGCAGCAGCAACGCGTTGCCGAGCTGCCGCGCCCGGAA
CTGCCGCAGCCCGTTCCGCT

Product: nucleotidyltransferase, putative

Products: NA

Alternate protein names: Signal-Transduction Protein; Nucleotidyltransferase; Signal Transduction Protein; Signal Transduction Protein With CBS Domains; Signal-Transduction Protein With CBS Domains; Nucleotidyltransferase Family; CBS Domain Protein; Signal Protein; Inosine-5-Monophosphate Dehydrogenase; Nucleotidyltransferase Domain Family Protein; DNA Polymerase III Subunit Epsilon; CBS Signal-Transduction Protein; Cyclic-Nucleotide Signal Transduction Protein; Multidomain-Containing Protein; Cyclic Nucleotide-Regulated Nucleotidyltransferase; Nucleotidyltransferases; Methyl-Accepting Chemotaxis Protein A

Number of amino acids: Translated: 652; Mature: 652

Protein sequence:

>652_residues
MNKKWKPTMSTPDAFAQAGKTAVLQNIHGTMEFLRKYAPFNQMEPAHLAYLVENCELRFYAEGDCIISPEDGVVQHFYIV
KQGRVHGQRPHTAKRGTDTTFEVIVGECFPMAALMGERATRTAHLAAEDTFCFLLNKPAFVNLVSNSPVFRDFAMRGVSS
LLDLVNQQAQMRAVESLGENFSLETSIGELALHHPVSCLPSRPLNEAVAMMQEENVGSIVIVDEALHPQGIFTLRDLRRA
IGTGTTDLSQPIAQFMTHDPFYLPPDATAFDAAIAMTERHIAHVCVVDNGLLRGVISERDLFSLQRVDLVHLAQTIRHAD
RVDALVVIRNRIKQLVDNMLAHGASSTQITRIVTLLNDHTVCRVIELAIAHMGDPGVPFTWLCFGSEGRQEQTLHTDQDN
GILFEAADAAEAAHIRGRLLPLAERINRDLDTCGFTLCKGNIMASNPQLCLSRQEWSRRFSSFVREATPENLLGSTIYFD
LRSIWGPAEGCEQLRQDLLDEIKDNSLFQRMMADNALRHRPPVGRFRDFVVARKGEGKDTLDLKVQGLTPFVDGARLLAL
SNDIGTCNTLERLRKLVEKGVIEPKDGAAYEEAYHFIQQTRMQQHQQQARDGLPYSNRLDPDTLNVLDRRILRESFRQAQ
RLQASLAVRYQL

Sequences:

>Translated_652_residues
MNKKWKPTMSTPDAFAQAGKTAVLQNIHGTMEFLRKYAPFNQMEPAHLAYLVENCELRFYAEGDCIISPEDGVVQHFYIV
KQGRVHGQRPHTAKRGTDTTFEVIVGECFPMAALMGERATRTAHLAAEDTFCFLLNKPAFVNLVSNSPVFRDFAMRGVSS
LLDLVNQQAQMRAVESLGENFSLETSIGELALHHPVSCLPSRPLNEAVAMMQEENVGSIVIVDEALHPQGIFTLRDLRRA
IGTGTTDLSQPIAQFMTHDPFYLPPDATAFDAAIAMTERHIAHVCVVDNGLLRGVISERDLFSLQRVDLVHLAQTIRHAD
RVDALVVIRNRIKQLVDNMLAHGASSTQITRIVTLLNDHTVCRVIELAIAHMGDPGVPFTWLCFGSEGRQEQTLHTDQDN
GILFEAADAAEAAHIRGRLLPLAERINRDLDTCGFTLCKGNIMASNPQLCLSRQEWSRRFSSFVREATPENLLGSTIYFD
LRSIWGPAEGCEQLRQDLLDEIKDNSLFQRMMADNALRHRPPVGRFRDFVVARKGEGKDTLDLKVQGLTPFVDGARLLAL
SNDIGTCNTLERLRKLVEKGVIEPKDGAAYEEAYHFIQQTRMQQHQQQARDGLPYSNRLDPDTLNVLDRRILRESFRQAQ
RLQASLAVRYQL
>Mature_652_residues
MNKKWKPTMSTPDAFAQAGKTAVLQNIHGTMEFLRKYAPFNQMEPAHLAYLVENCELRFYAEGDCIISPEDGVVQHFYIV
KQGRVHGQRPHTAKRGTDTTFEVIVGECFPMAALMGERATRTAHLAAEDTFCFLLNKPAFVNLVSNSPVFRDFAMRGVSS
LLDLVNQQAQMRAVESLGENFSLETSIGELALHHPVSCLPSRPLNEAVAMMQEENVGSIVIVDEALHPQGIFTLRDLRRA
IGTGTTDLSQPIAQFMTHDPFYLPPDATAFDAAIAMTERHIAHVCVVDNGLLRGVISERDLFSLQRVDLVHLAQTIRHAD
RVDALVVIRNRIKQLVDNMLAHGASSTQITRIVTLLNDHTVCRVIELAIAHMGDPGVPFTWLCFGSEGRQEQTLHTDQDN
GILFEAADAAEAAHIRGRLLPLAERINRDLDTCGFTLCKGNIMASNPQLCLSRQEWSRRFSSFVREATPENLLGSTIYFD
LRSIWGPAEGCEQLRQDLLDEIKDNSLFQRMMADNALRHRPPVGRFRDFVVARKGEGKDTLDLKVQGLTPFVDGARLLAL
SNDIGTCNTLERLRKLVEKGVIEPKDGAAYEEAYHFIQQTRMQQHQQQARDGLPYSNRLDPDTLNVLDRRILRESFRQAQ
RLQASLAVRYQL

Specific function: Unknown

COG id: COG2905

COG function: function code T; Predicted signal-transduction protein containing cAMP-binding and CBS domains

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 73174; Mature: 73174

Theoretical pI: Translated: 6.58; Mature: 6.58

Prosite motif: PS50042 CNMP_BINDING_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKKWKPTMSTPDAFAQAGKTAVLQNIHGTMEFLRKYAPFNQMEPAHLAYLVENCELRFY
CCCCCCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCEEEE
AEGDCIISPEDGVVQHFYIVKQGRVHGQRPHTAKRGTDTTFEVIVGECFPMAALMGERAT
ECCCEEECCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCHHH
RTAHLAAEDTFCFLLNKPAFVNLVSNSPVFRDFAMRGVSSLLDLVNQQAQMRAVESLGEN
HHHEEECCCCEEEEECCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
FSLETSIGELALHHPVSCLPSRPLNEAVAMMQEENVGSIVIVDEALHPQGIFTLRDLRRA
CEEECCHHHHHHHCCHHHCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHH
IGTGTTDLSQPIAQFMTHDPFYLPPDATAFDAAIAMTERHIAHVCVVDNGLLRGVISERD
HCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHEEEEEECCHHHHHHHCHHH
LFSLQRVDLVHLAQTIRHADRVDALVVIRNRIKQLVDNMLAHGASSTQITRIVTLLNDHT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCH
VCRVIELAIAHMGDPGVPFTWLCFGSEGRQEQTLHTDQDNGILFEAADAAEAAHIRGRLL
HHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHH
PLAERINRDLDTCGFTLCKGNIMASNPQLCLSRQEWSRRFSSFVREATPENLLGSTIYFD
HHHHHHCCCHHHCCCEEECCCEEECCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
LRSIWGPAEGCEQLRQDLLDEIKDNSLFQRMMADNALRHRPPVGRFRDFVVARKGEGKDT
HHHHCCCHHHHHHHHHHHHHHHCCHHHHHHHHHCCHHHCCCCHHHHHHHHEEECCCCCCE
LDLKVQGLTPFVDGARLLALSNDIGTCNTLERLRKLVEKGVIEPKDGAAYEEAYHFIQQT
EEEEEECCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH
RMQQHQQQARDGLPYSNRLDPDTLNVLDRRILRESFRQAQRLQASLAVRYQL
HHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEECC
>Mature Secondary Structure
MNKKWKPTMSTPDAFAQAGKTAVLQNIHGTMEFLRKYAPFNQMEPAHLAYLVENCELRFY
CCCCCCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCEEEE
AEGDCIISPEDGVVQHFYIVKQGRVHGQRPHTAKRGTDTTFEVIVGECFPMAALMGERAT
ECCCEEECCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCHHH
RTAHLAAEDTFCFLLNKPAFVNLVSNSPVFRDFAMRGVSSLLDLVNQQAQMRAVESLGEN
HHHEEECCCCEEEEECCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
FSLETSIGELALHHPVSCLPSRPLNEAVAMMQEENVGSIVIVDEALHPQGIFTLRDLRRA
CEEECCHHHHHHHCCHHHCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHH
IGTGTTDLSQPIAQFMTHDPFYLPPDATAFDAAIAMTERHIAHVCVVDNGLLRGVISERD
HCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHEEEEEECCHHHHHHHCHHH
LFSLQRVDLVHLAQTIRHADRVDALVVIRNRIKQLVDNMLAHGASSTQITRIVTLLNDHT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCH
VCRVIELAIAHMGDPGVPFTWLCFGSEGRQEQTLHTDQDNGILFEAADAAEAAHIRGRLL
HHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHH
PLAERINRDLDTCGFTLCKGNIMASNPQLCLSRQEWSRRFSSFVREATPENLLGSTIYFD
HHHHHHCCCHHHCCCEEECCCEEECCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
LRSIWGPAEGCEQLRQDLLDEIKDNSLFQRMMADNALRHRPPVGRFRDFVVARKGEGKDT
HHHHCCCHHHHHHHHHHHHHHHCCHHHHHHHHHCCHHHCCCCHHHHHHHHEEECCCCCCE
LDLKVQGLTPFVDGARLLALSNDIGTCNTLERLRKLVEKGVIEPKDGAAYEEAYHFIQQT
EEEEEECCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH
RMQQHQQQARDGLPYSNRLDPDTLNVLDRRILRESFRQAQRLQASLAVRYQL
HHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA