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The map label for this gene is yohK [H]

Identifier: 145299360

GI number: 145299360

Start: 2570820

End: 2571506

Strand: Direct

Name: yohK [H]

Synonym: ASA_2409

Alternate gene names: 145299360

Gene position: 2570820-2571506 (Clockwise)

Preceding gene: 145299359

Following gene: 145299361

Centisome position: 54.67

GC content: 64.05

Gene sequence:

>687_bases
ATGATCTTCTGGCTTGCCATTCCCCTGACCCTGGCACTCTATTTTGCCACCCGGGCCCTCTATCGCCGTCTGCCCTGGCC
CATCATCAATCCCGTGCTGGTGCCCACCGCCGTCATCATAGGCCTGCTGCTCTGGCTGGATCTGCCACTTGAGCAGTACG
AGAGTGGCACCCTCCCCATCACGGCCCTGCTGGAACCCGCCGTGGTGGCACTGGCACTGCCGCTGTATCAGCAGGCCCGC
CAGATCCAGGCCAGGCTCAAGCCCATCCTAGTCTGTACTCTGGCCTCCGTCTTGATCTCGGTCTGCACTACCCTGCTGAT
CGGTCATTTTATGGGCGCCGACCCGGCGTTGCTGGCATCGCTCGCCACCAAGTCCATCACAACCCCGCTTGCCATGAGCG
TCAGCCAGTCCATCGGCGGTATACCTGCCATAGCGGCGGCCGTGGTGGTGGTGGTCGGGATTGTAGGCGCCCTCATCGGA
TACCCGCTGCTCAAACTGATGCGGGTGACAGACCCCGAGGCCCAGGGACTCGCCATGGGAGCCTGCGCCCACGCCATCGG
CACCGCCACCTCAGCCGAGAAGGGCATCACCCAGGGGGCCTTCTCGTCGCTGGCCATGGTGGTGTGCGGCATCCTCACCG
CCGCCGTCGCCCCCCTGCTGTTTGCTCTTTATCACTGGTTGACCTGA

Upstream 100 bases:

>100_bases
AGCCCCTGCGCCAGTCCTTCGGTCTCATCATGCTCTGCATCGTACTGGGGATAGTCTTGATCCTGGGCACTGTCGGGCGC
CTGTACCAGAGGATGAACAA

Downstream 100 bases:

>100_bases
GGGTCACCCATTTGCTGGCGCTGCGGGCCTGTTGGCCCGCCACTGTGCGAGCTGACGCACAATTTGCGCAAGACAAACGT
TTCCTTTATCCTCCTCCTCC

Product: LrgB family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 228; Mature: 228

Protein sequence:

>228_residues
MIFWLAIPLTLALYFATRALYRRLPWPIINPVLVPTAVIIGLLLWLDLPLEQYESGTLPITALLEPAVVALALPLYQQAR
QIQARLKPILVCTLASVLISVCTTLLIGHFMGADPALLASLATKSITTPLAMSVSQSIGGIPAIAAAVVVVVGIVGALIG
YPLLKLMRVTDPEAQGLAMGACAHAIGTATSAEKGITQGAFSSLAMVVCGILTAAVAPLLFALYHWLT

Sequences:

>Translated_228_residues
MIFWLAIPLTLALYFATRALYRRLPWPIINPVLVPTAVIIGLLLWLDLPLEQYESGTLPITALLEPAVVALALPLYQQAR
QIQARLKPILVCTLASVLISVCTTLLIGHFMGADPALLASLATKSITTPLAMSVSQSIGGIPAIAAAVVVVVGIVGALIG
YPLLKLMRVTDPEAQGLAMGACAHAIGTATSAEKGITQGAFSSLAMVVCGILTAAVAPLLFALYHWLT
>Mature_228_residues
MIFWLAIPLTLALYFATRALYRRLPWPIINPVLVPTAVIIGLLLWLDLPLEQYESGTLPITALLEPAVVALALPLYQQAR
QIQARLKPILVCTLASVLISVCTTLLIGHFMGADPALLASLATKSITTPLAMSVSQSIGGIPAIAAAVVVVVGIVGALIG
YPLLKLMRVTDPEAQGLAMGACAHAIGTATSAEKGITQGAFSSLAMVVCGILTAAVAPLLFALYHWLT

Specific function: Unknown

COG id: COG1346

COG function: function code M; Putative effector of murein hydrolase

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the yohK (E.coli)/ywbG (IPA-22R) (B.subtilis) family [H]

Homologues:

Organism=Escherichia coli, GI1788464, Length=219, Percent_Identity=48.8584474885845, Blast_Score=197, Evalue=4e-52,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005261
- InterPro:   IPR007300 [H]

Pfam domain/function: PF04172 LrgB [H]

EC number: NA

Molecular weight: Translated: 23916; Mature: 23916

Theoretical pI: Translated: 8.32; Mature: 8.32

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIFWLAIPLTLALYFATRALYRRLPWPIINPVLVPTAVIIGLLLWLDLPLEQYESGTLPI
CHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHCCCCCCH
TALLEPAVVALALPLYQQARQIQARLKPILVCTLASVLISVCTTLLIGHFMGADPALLAS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
LATKSITTPLAMSVSQSIGGIPAIAAAVVVVVGIVGALIGYPLLKLMRVTDPEAQGLAMG
HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
ACAHAIGTATSAEKGITQGAFSSLAMVVCGILTAAVAPLLFALYHWLT
HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MIFWLAIPLTLALYFATRALYRRLPWPIINPVLVPTAVIIGLLLWLDLPLEQYESGTLPI
CHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHCCCCCCH
TALLEPAVVALALPLYQQARQIQARLKPILVCTLASVLISVCTTLLIGHFMGADPALLAS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
LATKSITTPLAMSVSQSIGGIPAIAAAVVVVVGIVGALIGYPLLKLMRVTDPEAQGLAMG
HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
ACAHAIGTATSAEKGITQGAFSSLAMVVCGILTAAVAPLLFALYHWLT
HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9278503; 2575702 [H]