| Definition | Aeromonas salmonicida subsp. salmonicida A449, complete genome. |
|---|---|
| Accession | NC_009348 |
| Length | 4,702,402 |
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The map label for this gene is pflB [H]
Identifier: 145299308
GI number: 145299308
Start: 2502306
End: 2504594
Strand: Direct
Name: pflB [H]
Synonym: ASA_2352
Alternate gene names: 145299308
Gene position: 2502306-2504594 (Clockwise)
Preceding gene: 145299307
Following gene: 145299318
Centisome position: 53.21
GC content: 56.14
Gene sequence:
>2289_bases ATGAAAATGGCAGAACTTAACGAACAGTTCCAAAAAGCATGGGAAGGCTTCGCGGCCGGTGAATGGCAGACCTCTGTCAA CACCCGTGACTTCATCCAGAAGAACTACACCCCGTATGAAGGTGACGAGTCCTTCCTGGCTGGCGCGACCGAAGCTACCA CCAAGCTGTGGGACAAGGTCATGGAAGGCATCAAGATCGAGAACCGCACCCATGCGCCGGTCGATTTTGATACCGACCTG CCCTCCACCATTACCGCTCACGATGCCGGCTATATCGATCAGAGCCTGGAGCAAATTGTAGGTCTGCAGACCGACAAGCC GCTCAAGCGCGCCATCATCGCCAACGGCGGTATCAAGATGGTCAAGACCTCTTGCGAAGTGTACGGTCGTCAACTTGACC CCATGGTCGAGAAGATCTTCACCGAGTACCGCAAGACTCACAACCAGGGCGTGTTCGACGTTTACACCAAGGACATCCTG AACTGCCGCAAGTCCGGCGTCATCACAGGTCTGCCGGATGCCTACGGTCGTGGCCGTATCATCGGTGACTACCGTCGTGT TGCCCTGTACGGCATCGACTTCCTGATGGCCGACAAACTGGCCCAGTTCAAGTCCCTGCAAGCTGATCTGGAAAATGGCG TCAACCTAGAAGCCACCATCCGTCTGCGCGAAGAGATCTCCGAGCAGCACCGTGCCCTGGCACAGATGAAGGTCATGGCT GCCAAATACGGCTGCGATATCTCAGTACCGGCCAAGAACGCCAAAGAAGCCGTACAGTGGACCTACTTCGCCTACCTGGC GGCAGTCAAGTCCCAGAACGGTGCCGCCATGTCCTTCGGTCGTACCTCCAGCTTCCTGGACGTCTACATCGAACGTGACC TGAAAAAAGGCGTGCTCACCGAGCAAGAAGCCCAGGAGCTGATGGACCACATGGTCATGAAGCTGCGTATGGTTCGCTTC CTGCGTACTCCCGAATACGATTCACTGTTCTCCGGCGACCCCATGTGGGCAACCGAGACCCTGGCTGGTATGGGCGTTGA TGGCCGTACCCTGGTCACCAAGAACAGCTTCCGTATGCTGAACACCCTGTACACCATGGGCCCGTCCCCTGAGCCGAACC TGACCATACTGTGGTCCGAGCAGCTGCCAATCGGGTTCAAGAAGTACTGTGCCAAGGTATCTATCGAGACCTCTTCCGTT CAGTACGAGAACGACGATCTGATGCGTCCGGACTTCAACAACGATGACTATGCCATCGCTTGCTGCGTGTCCCCGATGAT CGTCGGCAAACAGATGCAGTTCTTCGGTGCCCGTGCCAACCTGGCCAAGACCATGCTGTATGCAATCAACGGCGGTATGG ACGAGAAACTCAAAATCCAGATCGGTCCCAAGACCGAAATGGTCAAGAGCGAGTACCTCGACTACAACGACGTGATGGAT CGTCTGGATCACTTCATGGACTGGCTGGCCAAGCAGTACGTGGCTGCCCTGAACATCATCCACTACATGCACGACAAGTA CAGCTACGAAGCCTCCCTGATGGCGCTGCACGACCGTGATGTCTATCGCACCATGGCTTGCGGCATCGCCGGTCTGTCTG TTGCGGCTGACTCCCTGTCTGCCATCAAGTACGCCAAGGTCAAGCCGGTTCGTGACGAAGATGGCGTTGCCATCGACTTC GAAATCGACGGCGAATACCCGCAGTTCGGTAACAACGACGCTCGCGTCGATGACATCGCCTGTGACCTGGTTGAACGCTT CATGAAGAAAATTCAGAAGCTGAACACCTACCGTGGCGCCGTGGCGACCCAGTCCGTACTGACCATCACCTCCAACGTCG TGTATGGCAAGAAGACCGGTAACACCCCGGATGGTCGTCGCTCAGGCGCGCCGTTTGGCCCGGGTGCCAACCCGATGCAC GGTCGTGACCAGAAGGGTGCCGTTGCTTCCCTGACTTCCGTTGCCAAGCTGCCGTTCGCTTACGCCAAAGATGGTATCTC CTATACCTTCTCCATCGTGCCGAACGCCCTGGGTAAAGACATGGAATCCCAGAAAGCCAACCTGGCTGGCCTGATGGACG GTTACTTCCATCACGAGTCCAACCTGGAAGGTGGTCAGCACCTGAACGTGAACGTGATGAACCGTGAAATGCTGCTGGAC GCCATGGAAAACCCGGAGAAATATCCGCAGTTGACCATCCGCGTATCCGGTTATGCCGTTCGCTTCAACTCTTTGACCAA AGAGCAACAGCAAGACGTCATTACCCGTACCTTCACCGCTTCTCTGTAA
Upstream 100 bases:
>100_bases CATTGGTGGTGGCGTCATGGTTGGTCTGACTTACTGGTTTATCTTCCGTCGTCATCATTAAGGATGATTGCGGGATACTA CATCAATACCGTGTGAGGTA
Downstream 100 bases:
>100_bases TCGCTTATTGGTAAGCAAGAGTCGCAGTGACTAAAAACCGGCGCCCAGGCGCCGGTTTTTTTATGTCTGCTTGCCAGCAG GCATCCACTCGAAAGGGATC
Product: formate acetyltransferase
Products: NA
Alternate protein names: Pyruvate formate-lyase 1 [H]
Number of amino acids: Translated: 762; Mature: 762
Protein sequence:
>762_residues MKMAELNEQFQKAWEGFAAGEWQTSVNTRDFIQKNYTPYEGDESFLAGATEATTKLWDKVMEGIKIENRTHAPVDFDTDL PSTITAHDAGYIDQSLEQIVGLQTDKPLKRAIIANGGIKMVKTSCEVYGRQLDPMVEKIFTEYRKTHNQGVFDVYTKDIL NCRKSGVITGLPDAYGRGRIIGDYRRVALYGIDFLMADKLAQFKSLQADLENGVNLEATIRLREEISEQHRALAQMKVMA AKYGCDISVPAKNAKEAVQWTYFAYLAAVKSQNGAAMSFGRTSSFLDVYIERDLKKGVLTEQEAQELMDHMVMKLRMVRF LRTPEYDSLFSGDPMWATETLAGMGVDGRTLVTKNSFRMLNTLYTMGPSPEPNLTILWSEQLPIGFKKYCAKVSIETSSV QYENDDLMRPDFNNDDYAIACCVSPMIVGKQMQFFGARANLAKTMLYAINGGMDEKLKIQIGPKTEMVKSEYLDYNDVMD RLDHFMDWLAKQYVAALNIIHYMHDKYSYEASLMALHDRDVYRTMACGIAGLSVAADSLSAIKYAKVKPVRDEDGVAIDF EIDGEYPQFGNNDARVDDIACDLVERFMKKIQKLNTYRGAVATQSVLTITSNVVYGKKTGNTPDGRRSGAPFGPGANPMH GRDQKGAVASLTSVAKLPFAYAKDGISYTFSIVPNALGKDMESQKANLAGLMDGYFHHESNLEGGQHLNVNVMNREMLLD AMENPEKYPQLTIRVSGYAVRFNSLTKEQQQDVITRTFTASL
Sequences:
>Translated_762_residues MKMAELNEQFQKAWEGFAAGEWQTSVNTRDFIQKNYTPYEGDESFLAGATEATTKLWDKVMEGIKIENRTHAPVDFDTDL PSTITAHDAGYIDQSLEQIVGLQTDKPLKRAIIANGGIKMVKTSCEVYGRQLDPMVEKIFTEYRKTHNQGVFDVYTKDIL NCRKSGVITGLPDAYGRGRIIGDYRRVALYGIDFLMADKLAQFKSLQADLENGVNLEATIRLREEISEQHRALAQMKVMA AKYGCDISVPAKNAKEAVQWTYFAYLAAVKSQNGAAMSFGRTSSFLDVYIERDLKKGVLTEQEAQELMDHMVMKLRMVRF LRTPEYDSLFSGDPMWATETLAGMGVDGRTLVTKNSFRMLNTLYTMGPSPEPNLTILWSEQLPIGFKKYCAKVSIETSSV QYENDDLMRPDFNNDDYAIACCVSPMIVGKQMQFFGARANLAKTMLYAINGGMDEKLKIQIGPKTEMVKSEYLDYNDVMD RLDHFMDWLAKQYVAALNIIHYMHDKYSYEASLMALHDRDVYRTMACGIAGLSVAADSLSAIKYAKVKPVRDEDGVAIDF EIDGEYPQFGNNDARVDDIACDLVERFMKKIQKLNTYRGAVATQSVLTITSNVVYGKKTGNTPDGRRSGAPFGPGANPMH GRDQKGAVASLTSVAKLPFAYAKDGISYTFSIVPNALGKDMESQKANLAGLMDGYFHHESNLEGGQHLNVNVMNREMLLD AMENPEKYPQLTIRVSGYAVRFNSLTKEQQQDVITRTFTASL >Mature_762_residues MKMAELNEQFQKAWEGFAAGEWQTSVNTRDFIQKNYTPYEGDESFLAGATEATTKLWDKVMEGIKIENRTHAPVDFDTDL PSTITAHDAGYIDQSLEQIVGLQTDKPLKRAIIANGGIKMVKTSCEVYGRQLDPMVEKIFTEYRKTHNQGVFDVYTKDIL NCRKSGVITGLPDAYGRGRIIGDYRRVALYGIDFLMADKLAQFKSLQADLENGVNLEATIRLREEISEQHRALAQMKVMA AKYGCDISVPAKNAKEAVQWTYFAYLAAVKSQNGAAMSFGRTSSFLDVYIERDLKKGVLTEQEAQELMDHMVMKLRMVRF LRTPEYDSLFSGDPMWATETLAGMGVDGRTLVTKNSFRMLNTLYTMGPSPEPNLTILWSEQLPIGFKKYCAKVSIETSSV QYENDDLMRPDFNNDDYAIACCVSPMIVGKQMQFFGARANLAKTMLYAINGGMDEKLKIQIGPKTEMVKSEYLDYNDVMD RLDHFMDWLAKQYVAALNIIHYMHDKYSYEASLMALHDRDVYRTMACGIAGLSVAADSLSAIKYAKVKPVRDEDGVAIDF EIDGEYPQFGNNDARVDDIACDLVERFMKKIQKLNTYRGAVATQSVLTITSNVVYGKKTGNTPDGRRSGAPFGPGANPMH GRDQKGAVASLTSVAKLPFAYAKDGISYTFSIVPNALGKDMESQKANLAGLMDGYFHHESNLEGGQHLNVNVMNREMLLD AMENPEKYPQLTIRVSGYAVRFNSLTKEQQQDVITRTFTASL
Specific function: Glucose metabolism (nonoxidative conversion). [C]
COG id: COG1882
COG function: function code C; Pyruvate-formate lyase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 pyruvate formate lyase domain [H]
Homologues:
Organism=Escherichia coli, GI1787131, Length=760, Percent_Identity=85.3947368421053, Blast_Score=1396, Evalue=0.0, Organism=Escherichia coli, GI48994926, Length=753, Percent_Identity=77.2908366533864, Blast_Score=1256, Evalue=0.0, Organism=Escherichia coli, GI1787044, Length=592, Percent_Identity=26.0135135135135, Blast_Score=178, Evalue=1e-45, Organism=Escherichia coli, GI1790388, Length=642, Percent_Identity=24.9221183800623, Blast_Score=140, Evalue=3e-34, Organism=Escherichia coli, GI1788933, Length=64, Percent_Identity=78.125, Blast_Score=107, Evalue=4e-24,
Paralogues:
None
Copy number: 3,500 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005949 - InterPro: IPR001150 - InterPro: IPR019777 - InterPro: IPR004184 [H]
Pfam domain/function: PF01228 Gly_radical; PF02901 PFL [H]
EC number: =2.3.1.54 [H]
Molecular weight: Translated: 85396; Mature: 85396
Theoretical pI: Translated: 5.98; Mature: 5.98
Prosite motif: PS00850 GLY_RADICAL_1 ; PS51149 GLY_RADICAL_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 4.6 %Met (Translated Protein) 5.6 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 4.6 %Met (Mature Protein) 5.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKMAELNEQFQKAWEGFAAGEWQTSVNTRDFIQKNYTPYEGDESFLAGATEATTKLWDKV CCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCCCCCCCCHHHCCCHHHHHHHHHHH MEGIKIENRTHAPVDFDTDLPSTITAHDAGYIDQSLEQIVGLQTDKPLKRAIIANGGIKM HHCCEECCCCCCCCCCCCCCCCCEECCCCHHHHHHHHHHHCCCCCCHHHHHHHCCCCCEE VKTSCEVYGRQLDPMVEKIFTEYRKTHNQGVFDVYTKDILNCRKSGVITGLPDAYGRGRI EEHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCEECCCCCCCCCCE IGDYRRVALYGIDFLMADKLAQFKSLQADLENGVNLEATIRLREEISEQHRALAQMKVMA EHHHHEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHH AKYGCDISVPAKNAKEAVQWTYFAYLAAVKSQNGAAMSFGRTSSFLDVYIERDLKKGVLT HHHCCCEECCCCCHHHHHHHHHHHHHHHHHCCCCCEEECCCCCHHHHHHHHHHHHHCCCC EQEAQELMDHMVMKLRMVRFLRTPEYDSLFSGDPMWATETLAGMGVDGRTLVTKNSFRML HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHCCCCCCCEEEECCHHHHH NTLYTMGPSPEPNLTILWSEQLPIGFKKYCAKVSIETSSVQYENDDLMRPDFNNDDYAIA HHHHHCCCCCCCCEEEEECCCCCCCHHHHHHEEEEECCCEEECCCCCCCCCCCCCCCEEE CCVSPMIVGKQMQFFGARANLAKTMLYAINGGMDEKLKIQIGPKTEMVKSEYLDYNDVMD EECCHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHCCCHHHHHH RLDHFMDWLAKQYVAALNIIHYMHDKYSYEASLMALHDRDVYRTMACGIAGLSVAADSLS HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHH AIKYAKVKPVRDEDGVAIDFEIDGEYPQFGNNDARVDDIACDLVERFMKKIQKLNTYRGA HHHHHCCCCCCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCH VATQSVLTITSNVVYGKKTGNTPDGRRSGAPFGPGANPMHGRDQKGAVASLTSVAKLPFA HHHHHHHEECCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCHH YAKDGISYTFSIVPNALGKDMESQKANLAGLMDGYFHHESNLEGGQHLNVNVMNREMLLD HHCCCCEEEEEECCHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECHHHHHH AMENPEKYPQLTIRVSGYAVRFNSLTKEQQQDVITRTFTASL HHHCCCCCCEEEEEEECEEEEECHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MKMAELNEQFQKAWEGFAAGEWQTSVNTRDFIQKNYTPYEGDESFLAGATEATTKLWDKV CCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCCCCCCCCHHHCCCHHHHHHHHHHH MEGIKIENRTHAPVDFDTDLPSTITAHDAGYIDQSLEQIVGLQTDKPLKRAIIANGGIKM HHCCEECCCCCCCCCCCCCCCCCEECCCCHHHHHHHHHHHCCCCCCHHHHHHHCCCCCEE VKTSCEVYGRQLDPMVEKIFTEYRKTHNQGVFDVYTKDILNCRKSGVITGLPDAYGRGRI EEHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCEECCCCCCCCCCE IGDYRRVALYGIDFLMADKLAQFKSLQADLENGVNLEATIRLREEISEQHRALAQMKVMA EHHHHEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHH AKYGCDISVPAKNAKEAVQWTYFAYLAAVKSQNGAAMSFGRTSSFLDVYIERDLKKGVLT HHHCCCEECCCCCHHHHHHHHHHHHHHHHHCCCCCEEECCCCCHHHHHHHHHHHHHCCCC EQEAQELMDHMVMKLRMVRFLRTPEYDSLFSGDPMWATETLAGMGVDGRTLVTKNSFRML HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHCCCCCCCEEEECCHHHHH NTLYTMGPSPEPNLTILWSEQLPIGFKKYCAKVSIETSSVQYENDDLMRPDFNNDDYAIA HHHHHCCCCCCCCEEEEECCCCCCCHHHHHHEEEEECCCEEECCCCCCCCCCCCCCCEEE CCVSPMIVGKQMQFFGARANLAKTMLYAINGGMDEKLKIQIGPKTEMVKSEYLDYNDVMD EECCHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHCCCHHHHHH RLDHFMDWLAKQYVAALNIIHYMHDKYSYEASLMALHDRDVYRTMACGIAGLSVAADSLS HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHH AIKYAKVKPVRDEDGVAIDFEIDGEYPQFGNNDARVDDIACDLVERFMKKIQKLNTYRGA HHHHHCCCCCCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCH VATQSVLTITSNVVYGKKTGNTPDGRRSGAPFGPGANPMHGRDQKGAVASLTSVAKLPFA HHHHHHHEECCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCHH YAKDGISYTFSIVPNALGKDMESQKANLAGLMDGYFHHESNLEGGQHLNVNVMNREMLLD HHCCCCEEEEEECCHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECHHHHHH AMENPEKYPQLTIRVSGYAVRFNSLTKEQQQDVITRTFTASL HHHCCCCCCEEEEEEECEEEEECHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 3053170; 8905232; 9278503; 2651404; 1310545; 9629924; 10504733 [H]